Equivalence class NR_3.0_41668.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4LJ0|1|C (rep) | polyadenosine RNA | Nab2 Zn fingers complexed with polyadenosine | X-ray diffraction | 2.15 | 2013-10-09 | ||||
| 2 | 4LJ0|1|D | polyadenosine RNA | Nab2 Zn fingers complexed with polyadenosine | X-ray diffraction | 2.15 | 2013-10-09 | ||||
| 3 | 4LJ0|1|E | polyadenosine RNA | Nab2 Zn fingers complexed with polyadenosine | X-ray diffraction | 2.15 | 2013-10-09 | ||||
| 4 | 7M50|1|TT+ 7M50|1|kk | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*U)-3') | Satellite tobacco mosaic virus | Crystallographic structure of a cubic crystal form of STMV grown from ammonium sulfate | X-ray diffraction | 2.31 | 2021-12-15 | |||
| 5 | 5BKN|1|P | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*A)-3') | Satellite tobacco mosaic virus | Crystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chloride | X-ray diffraction | 3 | 2021-12-15 | |||
| 6 | 5BKN|1|S+ 5BKN|1|h | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*U)-3') | Satellite tobacco mosaic virus | Crystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chloride | X-ray diffraction | 3 | 2021-12-15 | |||
| 7 | 5BKN|1|a | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*A)-3') | Satellite tobacco mosaic virus | Crystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chloride | X-ray diffraction | 3 | 2021-12-15 |
Release history
| Release | 3.209 | 3.210 | 3.211 | 3.212 | 3.213 | 3.214 | 3.215 | 3.216 | 3.217 | 3.218 | 3.219 | 3.220 | 3.221 | 3.222 | 3.223 | 3.224 | 3.225 | 3.226 | 3.227 | 3.228 | 3.229 | 3.230 | 3.231 | 3.232 | 3.233 | 3.234 | 3.235 | 3.236 | 3.237 | 3.238 | 3.239 | 3.240 | 3.241 | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2021-12-15 | 2021-12-22 | 2021-12-29 | 2022-01-05 | 2022-01-12 | 2022-01-19 | 2022-01-26 | 2022-02-02 | 2022-02-09 | 2022-02-16 | 2022-02-23 | 2022-03-02 | 2022-03-09 | 2022-03-16 | 2022-03-23 | 2022-03-30 | 2022-04-06 | 2022-04-13 | 2022-04-20 | 2022-04-27 | 2022-05-04 | 2022-05-11 | 2022-05-18 | 2022-05-25 | 2022-06-01 | 2022-06-08 | 2022-06-15 | 2022-06-22 | 2022-06-29 | 2022-07-06 | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.0_41668.1 | NR_3.0_80093.3 | 3.209 | (3) 4LJ0|1|E, 4LJ0|1|D, 4LJ0|1|C | (4) 7M50|1|TT+7M50|1|kk, 5BKN|1|S+5BKN|1|h, 5BKN|1|P, 5BKN|1|a | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.0_41668.1 | NR_3.0_41668.2 | 3.270 | (7) 4LJ0|1|D, 4LJ0|1|C, 7M50|1|TT+7M50|1|kk, 5BKN|1|a, 5BKN|1|S+5BKN|1|h, 5BKN|1|P, 4LJ0|1|E | (0) | (1) 8CX0|1|K |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5BKN|1|P | Crystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chloride | X-RAY DIFFRACTION | 3 | 7 |
| 2 | 5BKN|1|S+5BKN|1|h | Crystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chloride | X-RAY DIFFRACTION | 3 | 6 |
| 3 | 4LJ0|1|E | Nab2 Zn fingers complexed with polyadenosine | X-RAY DIFFRACTION | 2.15 | 2 |
| 4 | 4LJ0|1|C | Nab2 Zn fingers complexed with polyadenosine | X-RAY DIFFRACTION | 2.15 | 4 |
| 5 | 4LJ0|1|D | Nab2 Zn fingers complexed with polyadenosine | X-RAY DIFFRACTION | 2.15 | 4 |
| 6 | 7M50|1|TT+7M50|1|kk | Crystallographic structure of a cubic crystal form of STMV grown from ammonium sulfate | X-RAY DIFFRACTION | 2.31 | 7 |
| 7 | 5BKN|1|a | Crystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chloride | X-RAY DIFFRACTION | 3 | 4 |