NR_3.0_42241.2

Members (13)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Å	Date
1	2GDI\|1\|X (rep)	TPP riboswitch (THI element)	TPP riboswitch			RF00059	Crystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphate	X-ray diffraction	2.05	2006-07-04
2	2GDI\|1\|Y	TPP riboswitch (THI element)	TPP riboswitch			RF00059	Crystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphate	X-ray diffraction	2.05	2006-07-04
3	7TDA\|1\|A	TPP riboswitch (THI element)	thiM TPP riboswitch RNA (80-MER)	Escherichia coli	Bacteria	RF00059	Crystal structure of the E. coli thiM riboswitch in complex with thiamine pyrophosphate, manganese ions	X-ray diffraction	2.25	2022-02-16
4	7TDB\|1\|A	TPP riboswitch (THI element)	thiM riboswitch RNA (83-MER)	Escherichia coli	Bacteria	RF00059	Crystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, manganese ions	X-ray diffraction	2.56	2022-02-16
5	4NYA\|1\|A	TPP riboswitch (THI element)	thiM TPP riboswitch	Escherichia coli	Bacteria	RF00059	Crystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amine	X-ray diffraction	2.65	2014-06-04
6	2HOJ\|1\|A	TPP riboswitch (THI element)	thi-box riboswitch			RF00059	Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, manganese ions	X-ray diffraction	2.5	2006-09-19
7	7TDC\|1\|A	TPP riboswitch (THI element)	thiM riboswitch RNA (83-MER)	Escherichia coli	Bacteria	RF00059	Crystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, calcium ions	X-ray diffraction	2.46	2022-02-16
8	2HOM\|1\|A	TPP riboswitch (THI element)	thi-box riboswitch			RF00059	Crystal structure of an E. coli thi-box riboswitch bound to thiamine monophosphate	X-ray diffraction	2.89	2006-09-19
9	2HOL\|1\|A	TPP riboswitch (THI element)	thi-box riboswitch			RF00059	Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, barium ions	X-ray diffraction	2.9	2006-09-19
10	4NYD\|1\|A	TPP riboswitch (THI element)	thiM TPP riboswitch	Escherichia coli	Bacteria	RF00059	Crystal structure of the E. coli thiM riboswitch in complex with hypoxanthine	X-ray diffraction	2.9	2014-06-04
11	4NYA\|1\|B	TPP riboswitch (THI element)	thiM TPP riboswitch	Escherichia coli	Bacteria	RF00059	Crystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amine	X-ray diffraction	2.65	2014-06-04
12	2HOO\|1\|A	TPP riboswitch (THI element)	thi-box riboswitch			RF00059	Crystal structure of an E. coli thi-box riboswitch bound to benfotiamine	X-ray diffraction	3	2006-09-19
13	7TD7\|1\|A	TPP riboswitch (THI element)	thiM riboswitch RNA (78-MER)	Escherichia coli	Bacteria	RF00059	Crystal structure of an E. coli thiM riboswitch bound to thiamine, manganese ions	X-ray diffraction	2.95	2022-02-16

Release history

Release	3.218	3.219	3.220	3.221	3.222	3.223	3.224	3.225	3.226	3.227	3.228	3.229	3.230	3.231
Date	2022-02-16	2022-02-23	2022-03-02	2022-03-09	2022-03-16	2022-03-23	2022-03-30	2022-04-06	2022-04-13	2022-04-20	2022-04-27	2022-05-04	2022-05-11	2022-05-18

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_3.0_42241.2	NR_3.0_42241.1	3.218	(9) 2GDI\|1\|X, 4NYD\|1\|A, 4NYA\|1\|B, 4NYA\|1\|A, 2HOO\|1\|A, 2HOM\|1\|A, 2HOL\|1\|A, 2HOJ\|1\|A, 2GDI\|1\|Y	(4) 7TD7\|1\|A, 7TDC\|1\|A, 7TDB\|1\|A, 7TDA\|1\|A	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_3.0_42241.2	NR_3.0_42241.3	3.232	(13) 2GDI\|1\|Y, 2HOL\|1\|A, 4NYA\|1\|A, 7TD7\|1\|A, 7TDB\|1\|A, 2GDI\|1\|X, 4NYD\|1\|A, 2HOO\|1\|A, 2HOJ\|1\|A, 7TDA\|1\|A, 4NYA\|1\|B, 2HOM\|1\|A, 7TDC\|1\|A	(0)	(6) 7TZR\|1\|X, 7TZT\|1\|A, 7TZS\|1\|X, 7TZU\|1\|A, 7TZS\|1\|Y, 7TZR\|1\|Y

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	2HOO\|1\|A	Crystal structure of an E. coli thi-box riboswitch bound to benfotiamine	X-RAY DIFFRACTION	3	83
2	7TD7\|1\|A	Crystal structure of an E. coli thiM riboswitch bound to thiamine, manganese ions	X-RAY DIFFRACTION	2.95	78
3	4NYD\|1\|A	Crystal structure of the E. coli thiM riboswitch in complex with hypoxanthine	X-RAY DIFFRACTION	2.9	79
4	7TDA\|1\|A	Crystal structure of the E. coli thiM riboswitch in complex with thiamine pyrophosphate, manganese ions	X-RAY DIFFRACTION	2.25	79
5	7TDB\|1\|A	Crystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, manganese ions	X-RAY DIFFRACTION	2.56	79
6	7TDC\|1\|A	Crystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, calcium ions	X-RAY DIFFRACTION	2.46	79
7	2HOJ\|1\|A	Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, manganese ions	X-RAY DIFFRACTION	2.5	78
8	2HOL\|1\|A	Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, barium ions	X-RAY DIFFRACTION	2.9	79
9	2HOM\|1\|A	Crystal structure of an E. coli thi-box riboswitch bound to thiamine monophosphate	X-RAY DIFFRACTION	2.89	80
10	2GDI\|1\|X	Crystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphate	X-RAY DIFFRACTION	2.05	78
11	4NYA\|1\|A	Crystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amine	X-RAY DIFFRACTION	2.65	78
12	4NYA\|1\|B	Crystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amine	X-RAY DIFFRACTION	2.65	78
13	2GDI\|1\|Y	Crystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphate	X-RAY DIFFRACTION	2.05	78

Equivalence class NR_3.0_42241.2 Obsolete

Release history

Parents

Children