#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
12GDI|1|X (rep)TPP riboswitchCrystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphateX-ray diffraction2.05802006-07-04
22GDI|1|YTPP riboswitchCrystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphateX-ray diffraction2.05802006-07-04
37TDA|1|ATPP riboswitch (THI element)thiM TPP riboswitch RNA (80-MER)Escherichia coliBacteriaRF00059Crystal structure of the E. coli thiM riboswitch in complex with thiamine pyrophosphate, manganese ionsX-ray diffraction2.25802022-02-16
47TDB|1|ATPP riboswitch (THI element)thiM riboswitch RNA (83-MER)Escherichia coliBacteriaRF00059Crystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, manganese ionsX-ray diffraction2.56802022-02-16
54NYA|1|ATPP riboswitch (THI element)thiM TPP riboswitchEscherichia coliBacteriaRF00059Crystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amineX-ray diffraction2.65802014-06-04
62HOJ|1|Athi-box riboswitchCrystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, manganese ionsX-ray diffraction2.5792006-09-19
77TDC|1|ATPP riboswitch (THI element)thiM riboswitch RNA (83-MER)Escherichia coliBacteriaRF00059Crystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, calcium ionsX-ray diffraction2.46802022-02-16
82HOM|1|Athi-box riboswitchCrystal structure of an E. coli thi-box riboswitch bound to thiamine monophosphateX-ray diffraction2.89802006-09-19
92HOL|1|Athi-box riboswitchCrystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, barium ionsX-ray diffraction2.9792006-09-19
104NYD|1|ATPP riboswitch (THI element)thiM TPP riboswitchEscherichia coliBacteriaRF00059Crystal structure of the E. coli thiM riboswitch in complex with hypoxanthineX-ray diffraction2.9802014-06-04
114NYA|1|BTPP riboswitch (THI element)thiM TPP riboswitchEscherichia coliBacteriaRF00059Crystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amineX-ray diffraction2.65802014-06-04
122HOO|1|Athi-box riboswitchCrystal structure of an E. coli thi-box riboswitch bound to benfotiamineX-ray diffraction3832006-09-19
137TD7|1|ATPP riboswitch (THI element)thiM riboswitch RNA (78-MER)Escherichia coliBacteriaRF00059Crystal structure of an E. coli thiM riboswitch bound to thiamine, manganese ionsX-ray diffraction2.95782022-02-16

Release history

Release3.2183.2193.2203.2213.2223.2233.2243.2253.2263.2273.2283.2293.2303.231
Date2022-02-162022-02-232022-03-022022-03-092022-03-162022-03-232022-03-302022-04-062022-04-132022-04-202022-04-272022-05-042022-05-112022-05-18

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.0_42241.2NR_3.0_42241.13.218(9) 2GDI|1|X, 2GDI|1|Y, 2HOJ|1|A, 2HOL|1|A, 2HOM|1|A, 2HOO|1|A, 4NYA|1|A, 4NYA|1|B, 4NYD|1|A(4) 7TD7|1|A, 7TDA|1|A, 7TDB|1|A, 7TDC|1|A(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.0_42241.2NR_3.0_42241.33.232(13) 2GDI|1|X, 2GDI|1|Y, 2HOJ|1|A, 2HOL|1|A, 2HOM|1|A, 2HOO|1|A, 4NYA|1|A, 4NYA|1|B, 4NYD|1|A, 7TD7|1|A, 7TDA|1|A, 7TDB|1|A, 7TDC|1|A(0) (6) 7TZR|1|X, 7TZR|1|Y, 7TZS|1|X, 7TZS|1|Y, 7TZT|1|A, 7TZU|1|A

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
12HOO|1|ACrystal structure of an E. coli thi-box riboswitch bound to benfotiamineX-RAY DIFFRACTION383
27TD7|1|ACrystal structure of an E. coli thiM riboswitch bound to thiamine, manganese ionsX-RAY DIFFRACTION2.9578
34NYD|1|ACrystal structure of the E. coli thiM riboswitch in complex with hypoxanthineX-RAY DIFFRACTION2.980
47TDA|1|ACrystal structure of the E. coli thiM riboswitch in complex with thiamine pyrophosphate, manganese ionsX-RAY DIFFRACTION2.2580
57TDB|1|ACrystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, manganese ionsX-RAY DIFFRACTION2.5680
67TDC|1|ACrystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, calcium ionsX-RAY DIFFRACTION2.4680
72HOJ|1|ACrystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, manganese ionsX-RAY DIFFRACTION2.579
82HOL|1|ACrystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, barium ionsX-RAY DIFFRACTION2.979
92HOM|1|ACrystal structure of an E. coli thi-box riboswitch bound to thiamine monophosphateX-RAY DIFFRACTION2.8980
102GDI|1|XCrystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphateX-RAY DIFFRACTION2.0580
114NYA|1|ACrystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amineX-RAY DIFFRACTION2.6580
124NYA|1|BCrystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amineX-RAY DIFFRACTION2.6580
132GDI|1|YCrystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphateX-RAY DIFFRACTION2.0580

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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