Equivalence class NR_3.0_42241.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2GDI|1|X (rep) | TPP riboswitch | Crystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphate | X-ray diffraction | 2.05 | 2006-07-04 | ||||
| 2 | 2GDI|1|Y | TPP riboswitch | Crystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphate | X-ray diffraction | 2.05 | 2006-07-04 | ||||
| 3 | 7TDA|1|A | TPP riboswitch (THI element) | thiM TPP riboswitch RNA (80-MER) | Escherichia coli | Bacteria | RF00059 | Crystal structure of the E. coli thiM riboswitch in complex with thiamine pyrophosphate, manganese ions | X-ray diffraction | 2.25 | 2022-02-16 |
| 4 | 7TDB|1|A | TPP riboswitch (THI element) | thiM riboswitch RNA (83-MER) | Escherichia coli | Bacteria | RF00059 | Crystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, manganese ions | X-ray diffraction | 2.56 | 2022-02-16 |
| 5 | 4NYA|1|A | TPP riboswitch (THI element) | thiM TPP riboswitch | Escherichia coli | Bacteria | RF00059 | Crystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amine | X-ray diffraction | 2.65 | 2014-06-04 |
| 6 | 2HOJ|1|A | thi-box riboswitch | Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, manganese ions | X-ray diffraction | 2.5 | 2006-09-19 | ||||
| 7 | 7TDC|1|A | TPP riboswitch (THI element) | thiM riboswitch RNA (83-MER) | Escherichia coli | Bacteria | RF00059 | Crystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, calcium ions | X-ray diffraction | 2.46 | 2022-02-16 |
| 8 | 2HOM|1|A | thi-box riboswitch | Crystal structure of an E. coli thi-box riboswitch bound to thiamine monophosphate | X-ray diffraction | 2.89 | 2006-09-19 | ||||
| 9 | 2HOL|1|A | thi-box riboswitch | Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, barium ions | X-ray diffraction | 2.9 | 2006-09-19 | ||||
| 10 | 4NYD|1|A | TPP riboswitch (THI element) | thiM TPP riboswitch | Escherichia coli | Bacteria | RF00059 | Crystal structure of the E. coli thiM riboswitch in complex with hypoxanthine | X-ray diffraction | 2.9 | 2014-06-04 |
| 11 | 4NYA|1|B | TPP riboswitch (THI element) | thiM TPP riboswitch | Escherichia coli | Bacteria | RF00059 | Crystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amine | X-ray diffraction | 2.65 | 2014-06-04 |
| 12 | 2HOO|1|A | thi-box riboswitch | Crystal structure of an E. coli thi-box riboswitch bound to benfotiamine | X-ray diffraction | 3 | 2006-09-19 | ||||
| 13 | 7TD7|1|A | TPP riboswitch (THI element) | thiM riboswitch RNA (78-MER) | Escherichia coli | Bacteria | RF00059 | Crystal structure of an E. coli thiM riboswitch bound to thiamine, manganese ions | X-ray diffraction | 2.95 | 2022-02-16 |
Release history
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.0_42241.2 | NR_3.0_42241.3 | 3.232 | (13) 2HOL|1|A, 4NYA|1|A, 7TD7|1|A, 7TDB|1|A, 2GDI|1|Y, 4NYD|1|A, 2GDI|1|X, 2HOO|1|A, 2HOJ|1|A, 7TDA|1|A, 4NYA|1|B, 2HOM|1|A, 7TDC|1|A | (0) | (6) 7TZU|1|A, 7TZS|1|Y, 7TZR|1|Y, 7TZT|1|A, 7TZS|1|X, 7TZR|1|X |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 2HOO|1|A | Crystal structure of an E. coli thi-box riboswitch bound to benfotiamine | X-RAY DIFFRACTION | 3 | 83 |
| 2 | 7TD7|1|A | Crystal structure of an E. coli thiM riboswitch bound to thiamine, manganese ions | X-RAY DIFFRACTION | 2.95 | 78 |
| 3 | 4NYD|1|A | Crystal structure of the E. coli thiM riboswitch in complex with hypoxanthine | X-RAY DIFFRACTION | 2.9 | 79 |
| 4 | 7TDA|1|A | Crystal structure of the E. coli thiM riboswitch in complex with thiamine pyrophosphate, manganese ions | X-RAY DIFFRACTION | 2.25 | 79 |
| 5 | 7TDB|1|A | Crystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, manganese ions | X-RAY DIFFRACTION | 2.56 | 79 |
| 6 | 7TDC|1|A | Crystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, calcium ions | X-RAY DIFFRACTION | 2.46 | 79 |
| 7 | 2HOJ|1|A | Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, manganese ions | X-RAY DIFFRACTION | 2.5 | 78 |
| 8 | 2HOL|1|A | Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, barium ions | X-RAY DIFFRACTION | 2.9 | 79 |
| 9 | 2HOM|1|A | Crystal structure of an E. coli thi-box riboswitch bound to thiamine monophosphate | X-RAY DIFFRACTION | 2.89 | 80 |
| 10 | 2GDI|1|X | Crystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphate | X-RAY DIFFRACTION | 2.05 | 78 |
| 11 | 4NYA|1|A | Crystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amine | X-RAY DIFFRACTION | 2.65 | 78 |
| 12 | 4NYA|1|B | Crystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amine | X-RAY DIFFRACTION | 2.65 | 78 |
| 13 | 2GDI|1|Y | Crystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphate | X-RAY DIFFRACTION | 2.05 | 78 |