#IFECompound(s)RNA source organismTitleMethodResolutionDate
12GDI|1|X (rep)TPP riboswitchCrystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphateX-RAY DIFFRACTION2.052006-07-04
22GDI|1|YTPP riboswitchCrystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphateX-RAY DIFFRACTION2.052006-07-04
37TDA|1|AthiM TPP riboswitch RNA (80-MER)Escherichia coliCrystal structure of the E. coli thiM riboswitch in complex with thiamine pyrophosphate, manganese ionsX-RAY DIFFRACTION2.252022-02-16
47TDB|1|AthiM riboswitch RNA (83-MER)Escherichia coliCrystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, manganese ionsX-RAY DIFFRACTION2.562022-02-16
54NYA|1|AthiM TPP riboswitchEscherichia coliCrystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amineX-RAY DIFFRACTION2.652014-06-04
62HOJ|1|Athi-box riboswitchCrystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, manganese ionsX-RAY DIFFRACTION2.52006-09-19
77TDC|1|AthiM riboswitch RNA (83-MER)Escherichia coliCrystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, calcium ionsX-RAY DIFFRACTION2.462022-02-16
82HOM|1|Athi-box riboswitchCrystal structure of an E. coli thi-box riboswitch bound to thiamine monophosphateX-RAY DIFFRACTION2.892006-09-19
92HOL|1|Athi-box riboswitchCrystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, barium ionsX-RAY DIFFRACTION2.92006-09-19
104NYD|1|AthiM TPP riboswitchEscherichia coliCrystal structure of the E. coli thiM riboswitch in complex with hypoxanthineX-RAY DIFFRACTION2.92014-06-04
114NYA|1|BthiM TPP riboswitchEscherichia coliCrystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amineX-RAY DIFFRACTION2.652014-06-04
122HOO|1|Athi-box riboswitchCrystal structure of an E. coli thi-box riboswitch bound to benfotiamineX-RAY DIFFRACTION32006-09-19
137TD7|1|AthiM riboswitch RNA (78-MER)Escherichia coliCrystal structure of an E. coli thiM riboswitch bound to thiamine, manganese ionsX-RAY DIFFRACTION2.952022-02-16

Release history

Release3.2183.2193.2203.2213.2223.2233.2243.2253.2263.2273.2283.2293.2303.231
Date2022-02-162022-02-232022-03-022022-03-092022-03-162022-03-232022-03-302022-04-062022-04-132022-04-202022-04-272022-05-042022-05-112022-05-18

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.0_42241.2NR_3.0_42241.13.218(9) 2GDI|1|X, 4NYD|1|A, 4NYA|1|B, 4NYA|1|A, 2HOO|1|A, 2HOM|1|A, 2HOL|1|A, 2HOJ|1|A, 2GDI|1|Y(4) 7TDB|1|A, 7TDA|1|A, 7TD7|1|A, 7TDC|1|A(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.0_42241.2NR_3.0_42241.33.232(13) 7TDB|1|A, 2GDI|1|Y, 2HOL|1|A, 4NYA|1|A, 7TD7|1|A, 2GDI|1|X, 4NYD|1|A, 2HOO|1|A, 2HOJ|1|A, 7TDA|1|A, 4NYA|1|B, 7TDC|1|A, 2HOM|1|A(0) (6) 7TZT|1|A, 7TZR|1|X, 7TZS|1|X, 7TZS|1|Y, 7TZU|1|A, 7TZR|1|Y

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
12HOO|1|ACrystal structure of an E. coli thi-box riboswitch bound to benfotiamineX-RAY DIFFRACTION383
27TD7|1|ACrystal structure of an E. coli thiM riboswitch bound to thiamine, manganese ionsX-RAY DIFFRACTION2.9578
34NYD|1|ACrystal structure of the E. coli thiM riboswitch in complex with hypoxanthineX-RAY DIFFRACTION2.979
47TDA|1|ACrystal structure of the E. coli thiM riboswitch in complex with thiamine pyrophosphate, manganese ionsX-RAY DIFFRACTION2.2579
57TDB|1|ACrystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, manganese ionsX-RAY DIFFRACTION2.5679
67TDC|1|ACrystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, calcium ionsX-RAY DIFFRACTION2.4679
72HOJ|1|ACrystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, manganese ionsX-RAY DIFFRACTION2.578
82HOL|1|ACrystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, barium ionsX-RAY DIFFRACTION2.979
92HOM|1|ACrystal structure of an E. coli thi-box riboswitch bound to thiamine monophosphateX-RAY DIFFRACTION2.8980
102GDI|1|XCrystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphateX-RAY DIFFRACTION2.0578
114NYA|1|ACrystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amineX-RAY DIFFRACTION2.6578
124NYA|1|BCrystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amineX-RAY DIFFRACTION2.6578
132GDI|1|YCrystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphateX-RAY DIFFRACTION2.0578