#IFECompound(s)RNA source organismTitleMethodResolutionDate
17TZS|1|X (rep)RNA (80-MER)Escherichia coliCrystal structure of the E. coli thiM riboswitch in complex with quinoxalin-6-ylmethanamine (compound 17)X-RAY DIFFRACTION2.212022-05-25
22GDI|1|XTPP riboswitchCrystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphateX-RAY DIFFRACTION2.052006-07-04
32GDI|1|YTPP riboswitchCrystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphateX-RAY DIFFRACTION2.052006-07-04
47TZS|1|YRNA (80-MER)Escherichia coliCrystal structure of the E. coli thiM riboswitch in complex with quinoxalin-6-ylmethanamine (compound 17)X-RAY DIFFRACTION2.212022-05-25
57TDA|1|AthiM TPP riboswitch RNA (80-MER)Escherichia coliCrystal structure of the E. coli thiM riboswitch in complex with thiamine pyrophosphate, manganese ionsX-RAY DIFFRACTION2.252022-02-16
67TDB|1|AthiM riboswitch RNA (83-MER)Escherichia coliCrystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, manganese ionsX-RAY DIFFRACTION2.562022-02-16
74NYA|1|AthiM TPP riboswitchEscherichia coliCrystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amineX-RAY DIFFRACTION2.652014-06-04
82HOJ|1|Athi-box riboswitchCrystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, manganese ionsX-RAY DIFFRACTION2.52006-09-19
97TDC|1|AthiM riboswitch RNA (83-MER)Escherichia coliCrystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, calcium ionsX-RAY DIFFRACTION2.462022-02-16
102HOM|1|Athi-box riboswitchCrystal structure of an E. coli thi-box riboswitch bound to thiamine monophosphateX-RAY DIFFRACTION2.892006-09-19
112HOL|1|Athi-box riboswitchCrystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, barium ionsX-RAY DIFFRACTION2.92006-09-19
127TZR|1|XRNA (80-MER)Escherichia coliCrystal structure of the E. coli thiM riboswitch bound to N-methyl-1-(quinoxalin-6-yl)methanamine (compound 16)X-RAY DIFFRACTION2.72022-05-25
134NYD|1|AthiM TPP riboswitchEscherichia coliCrystal structure of the E. coli thiM riboswitch in complex with hypoxanthineX-RAY DIFFRACTION2.92014-06-04
144NYA|1|BthiM TPP riboswitchEscherichia coliCrystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amineX-RAY DIFFRACTION2.652014-06-04
157TZR|1|YRNA (80-MER)Escherichia coliCrystal structure of the E. coli thiM riboswitch bound to N-methyl-1-(quinoxalin-6-yl)methanamine (compound 16)X-RAY DIFFRACTION2.72022-05-25
162HOO|1|Athi-box riboswitchCrystal structure of an E. coli thi-box riboswitch bound to benfotiamineX-RAY DIFFRACTION32006-09-19
177TZT|1|ARNA (79-MER)Escherichia coliCrystal structure of the E. coli thiM riboswitch in complex with N1,N1-dimethyl-N2-(quinoxalin-6-ylmethyl)ethane-1,2-diamine (linked compound 37)X-RAY DIFFRACTION2.962022-05-25
187TZU|1|ARNA (79-MER)Escherichia coliCrystal structure of the E. coli thiM riboswitch bound to 1-(4-(piperazin-1-yl)pyridin-3-yl)-N-(quinoxalin-6-ylmethyl)methanamine (linked compound 38)X-RAY DIFFRACTION2.872022-05-25
197TD7|1|AthiM riboswitch RNA (78-MER)Escherichia coliCrystal structure of an E. coli thiM riboswitch bound to thiamine, manganese ionsX-RAY DIFFRACTION2.952022-02-16

Release history

Release3.2323.2333.2343.2353.2363.2373.2383.2393.2403.2413.2423.2433.2443.2453.2463.2473.2483.249
Date2022-05-252022-06-012022-06-082022-06-152022-06-222022-06-292022-07-062022-07-132022-07-202022-07-272022-08-032022-08-102022-08-172022-08-242022-08-312022-09-072022-09-142022-09-21

Parents


Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
12HOO|1|ACrystal structure of an E. coli thi-box riboswitch bound to benfotiamineX-RAY DIFFRACTION383
27TD7|1|ACrystal structure of an E. coli thiM riboswitch bound to thiamine, manganese ionsX-RAY DIFFRACTION2.9578
37TZU|1|ACrystal structure of the E. coli thiM riboswitch bound to 1-(4-(piperazin-1-yl)pyridin-3-yl)-N-(quinoxalin-6-ylmethyl)methanamine (linked compound 38)X-RAY DIFFRACTION2.8779
47TZT|1|ACrystal structure of the E. coli thiM riboswitch in complex with N1,N1-dimethyl-N2-(quinoxalin-6-ylmethyl)ethane-1,2-diamine (linked compound 37)X-RAY DIFFRACTION2.9679
54NYD|1|ACrystal structure of the E. coli thiM riboswitch in complex with hypoxanthineX-RAY DIFFRACTION2.979
67TDA|1|ACrystal structure of the E. coli thiM riboswitch in complex with thiamine pyrophosphate, manganese ionsX-RAY DIFFRACTION2.2579
77TDB|1|ACrystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, manganese ionsX-RAY DIFFRACTION2.5679
87TDC|1|ACrystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, calcium ionsX-RAY DIFFRACTION2.4679
92HOJ|1|ACrystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, manganese ionsX-RAY DIFFRACTION2.578
102HOL|1|ACrystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, barium ionsX-RAY DIFFRACTION2.979
112HOM|1|ACrystal structure of an E. coli thi-box riboswitch bound to thiamine monophosphateX-RAY DIFFRACTION2.8980
122GDI|1|XCrystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphateX-RAY DIFFRACTION2.0578
137TZR|1|XCrystal structure of the E. coli thiM riboswitch bound to N-methyl-1-(quinoxalin-6-yl)methanamine (compound 16)X-RAY DIFFRACTION2.778
147TZS|1|XCrystal structure of the E. coli thiM riboswitch in complex with quinoxalin-6-ylmethanamine (compound 17)X-RAY DIFFRACTION2.2178
154NYA|1|ACrystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amineX-RAY DIFFRACTION2.6578
167TZS|1|YCrystal structure of the E. coli thiM riboswitch in complex with quinoxalin-6-ylmethanamine (compound 17)X-RAY DIFFRACTION2.2178
177TZR|1|YCrystal structure of the E. coli thiM riboswitch bound to N-methyl-1-(quinoxalin-6-yl)methanamine (compound 16)X-RAY DIFFRACTION2.778
184NYA|1|BCrystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amineX-RAY DIFFRACTION2.6578
192GDI|1|YCrystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphateX-RAY DIFFRACTION2.0578