NR_3.0_42622.14

Members (71)
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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	5E81\|1\|16 (rep)	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair	X-ray diffraction	2.95	2016-01-27
2	4Z3S\|1\|1B	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution	X-ray diffraction	2.65	2015-06-03
3	4Y4P\|1\|1B	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-ray diffraction	2.5	2015-03-18
4	4WQF\|1\|AB	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state	X-ray diffraction	2.8	2015-01-28
5	4WQY\|1\|AB	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)	X-ray diffraction	2.8	2015-01-28
6	4V9R\|1\|BB	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome	X-ray diffraction	3	2014-07-09
7	4W2G\|1\|BB	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.55	2014-10-15
8	1VY4\|1\|BB	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-ray diffraction	2.6	2014-08-20
9	5DOY\|1\|1B	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution	X-ray diffraction	2.6	2015-12-30
10	5FDV\|1\|1B	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome	X-ray diffraction	2.8	2016-01-27
11	4WPO\|1\|AB	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state	X-ray diffraction	2.8	2015-01-28
12	1VY7\|1\|BB	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-ray diffraction	2.8	2014-08-20
13	1VY6\|1\|BB	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-ray diffraction	2.9	2014-08-20
14	4W2H\|1\|DB	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site	X-ray diffraction	2.7	2014-10-15
15	5FDU\|1\|1B	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome	X-ray diffraction	2.9	2016-01-27
16	4WSD\|1\|16	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.	X-ray diffraction	2.95	2015-06-10
17	5E81\|1\|1J	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair	X-ray diffraction	2.95	2016-01-27
18	4V8D\|1\|BB	5S ribosomal RNA	5S RIBOSOMAL RNA	Thermus thermophilus	Bacteria	RF00001	Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).	X-ray diffraction	3	2014-07-09
19	4V8B\|1\|BB	5S ribosomal RNA	5S RIBOSOMAL RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-ray diffraction	3	2014-07-09
20	4V8D\|1\|DB	5S ribosomal RNA	5S RIBOSOMAL RNA	Thermus thermophilus	Bacteria	RF00001	Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).	X-ray diffraction	3	2014-07-09
21	4Y4O\|1\|1B	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution	X-ray diffraction	2.3	2015-03-18
22	5FDV\|1\|2B	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome	X-ray diffraction	2.8	2016-01-27
23	4Z3S\|1\|2B	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution	X-ray diffraction	2.65	2015-06-03
24	4WQU\|1\|AB	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin	X-ray diffraction	2.8	2015-01-28
25	4W2E\|1\|B	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome	X-ray diffraction	2.9	2014-10-01
26	4W2I\|1\|BB	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.7	2014-10-15
27	4W2F\|1\|BB	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.4	2014-10-15
28	1VY5\|1\|BB	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-ray diffraction	2.55	2014-08-20
29	4WQY\|1\|CB	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)	X-ray diffraction	2.8	2015-01-28
30	4WPO\|1\|CB	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state	X-ray diffraction	2.8	2015-01-28
31	4V9R\|1\|DB	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome	X-ray diffraction	3	2014-07-09
32	4LNT\|1\|RB	5S ribosomal RNA	5S rRNA	Thermus thermophilus	Bacteria	RF00001	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome	X-ray diffraction	2.94	2014-08-06
33	4LNT\|1\|YB	5S ribosomal RNA	5S rRNA	Thermus thermophilus	Bacteria	RF00001	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome	X-ray diffraction	2.94	2014-08-06
34	4Z8C\|1\|1B	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin	X-ray diffraction	2.9	2015-05-20
35	5F8K\|1\|2B	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome	X-ray diffraction	2.8	2016-02-03
36	4Y4O\|1\|2B	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution	X-ray diffraction	2.3	2015-03-18
37	5FDU\|1\|2B	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome	X-ray diffraction	2.9	2016-01-27
38	4W2H\|1\|BB	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site	X-ray diffraction	2.7	2014-10-15
39	4WQU\|1\|CB	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin	X-ray diffraction	2.8	2015-01-28
40	4WQF\|1\|CB	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state	X-ray diffraction	2.8	2015-01-28
41	4V8B\|1\|DB	5S ribosomal RNA	5S RIBOSOMAL RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-ray diffraction	3	2014-07-09
42	5F8K\|1\|1B	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome	X-ray diffraction	2.8	2016-02-03
43	4V8I\|1\|BB	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of YfiA bound to the 70S ribosome.	X-ray diffraction	2.7	2014-07-09
44	1VY5\|1\|DB	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-ray diffraction	2.55	2014-08-20
45	4W2G\|1\|DB	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.55	2014-10-15
46	4W2I\|1\|DB	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.7	2014-10-15
47	4V67\|1\|BB	5S ribosomal RNA	5S RRNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of a translation termination complex formed with release factor RF2.	X-ray diffraction	3	2014-07-09
48	4V67\|1\|DB	5S ribosomal RNA	5S RRNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of a translation termination complex formed with release factor RF2.	X-ray diffraction	3	2014-07-09
49	4V8G\|1\|BB	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of RMF bound to the 70S ribosome.	X-ray diffraction	3	2014-07-09
50	4V8I\|1\|DB	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of YfiA bound to the 70S ribosome.	X-ray diffraction	2.7	2014-07-09
51	4V7X\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Structure of the Thermus thermophilus ribosome complexed with erythromycin.	X-ray diffraction	3	2014-07-09
52	4Z8C\|1\|2B	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin	X-ray diffraction	2.9	2015-05-20
53	4V8G\|1\|DB	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of RMF bound to the 70S ribosome.	X-ray diffraction	3	2014-07-09
54	4W2F\|1\|DB	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.4	2014-10-15
55	4V7L\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	The structures of viomycin bound to the 70S ribosome.	X-ray diffraction	3	2014-07-09
56	4V9H\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state	X-ray diffraction	2.86	2014-07-09
57	4V7Y\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.	X-ray diffraction	3	2014-07-09
58	4V7Y\|1\|DB	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.	X-ray diffraction	3	2014-07-09
59	4V7X\|1\|DB	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Structure of the Thermus thermophilus ribosome complexed with erythromycin.	X-ray diffraction	3	2014-07-09
60	5DOY\|1\|2B	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution	X-ray diffraction	2.6	2015-12-30
61	1VY4\|1\|DB	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-ray diffraction	2.6	2014-08-20
62	4V51\|1\|BB	5S ribosomal RNA	5S RIBOSOMAL RNA	Thermus thermophilus	Bacteria	RF00001	Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin	X-ray diffraction	2.8	2014-07-09
63	4V90\|1\|BB	5S ribosomal RNA	5S RIBOSOMAL RNA	Thermus thermophilus	Bacteria	RF00001	Thermus thermophilus Ribosome	X-ray diffraction	2.95	2014-07-09
64	4V7W\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.	X-ray diffraction	3	2014-07-09
65	4V51\|1\|DB	5S ribosomal RNA	5S RIBOSOMAL RNA	Thermus thermophilus	Bacteria	RF00001	Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin	X-ray diffraction	2.8	2014-07-09
66	4V7W\|1\|DB	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.	X-ray diffraction	3	2014-07-09
67	4WSD\|1\|1J	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.	X-ray diffraction	2.95	2015-06-10
68	4V7L\|1\|DB	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	The structures of viomycin bound to the 70S ribosome.	X-ray diffraction	3	2014-07-09
69	1VY6\|1\|DB	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-ray diffraction	2.9	2014-08-20
70	1VY7\|1\|DB	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-ray diffraction	2.8	2014-08-20
71	4Y4P\|1\|2B	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-ray diffraction	2.5	2015-03-18

Release history

Release	2.61	2.62	2.63	2.64	2.65	2.66	2.67	2.68	2.69
Date	2016-02-05	2016-02-12	2016-02-19	2016-02-26	2016-03-04	2016-03-11	2016-03-18	2016-03-25	2016-04-01

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_3.0_42622.14	NR_all_42622.13	2.61	(69) 1VY5\|1\|DB, 1VY6\|1\|BB, 1VY5\|1\|BB, 1VY6\|1\|DB, 1VY4\|1\|BB, 1VY4\|1\|DB, 5FDV\|1\|2B, 5FDV\|1\|1B, 5FDU\|1\|1B, 5E81\|1\|1J, 5FDU\|1\|2B, 5DOY\|1\|2B, 5E81\|1\|16, 5DOY\|1\|1B, 4Z8C\|1\|1B, 4Z8C\|1\|2B, 4Z3S\|1\|2B, 4Y4P\|1\|2B, 4Z3S\|1\|1B, 4Y4O\|1\|2B, 4Y4O\|1\|1B, 4Y4P\|1\|1B, 4WSD\|1\|16, 4WQY\|1\|CB, 4WSD\|1\|1J, 4WQU\|1\|CB, 4WQY\|1\|AB, 4WQU\|1\|AB, 4WQF\|1\|AB, 4WQF\|1\|CB, 4WPO\|1\|CB, 4W2I\|1\|DB, 4WPO\|1\|AB, 4W2H\|1\|DB, 4W2H\|1\|BB, 4W2I\|1\|BB, 4W2G\|1\|BB, 4W2F\|1\|DB, 4W2G\|1\|DB, 4W2E\|1\|B, 4W2F\|1\|BB, 4V9R\|1\|DB, 4V9H\|1\|BB, 4V9R\|1\|BB, 4V90\|1\|BB, 4V8I\|1\|BB, 4V8I\|1\|DB, 4V8G\|1\|BB, 4V8D\|1\|DB, 4V8G\|1\|DB, 4V8B\|1\|DB, 4V8B\|1\|BB, 4V8D\|1\|BB, 4V7Y\|1\|BB, 4V7Y\|1\|DB, 4V7X\|1\|DB, 4V7W\|1\|DB, 4V7X\|1\|BB, 4V7W\|1\|BB, 4V7L\|1\|BB, 4V7L\|1\|DB, 4V67\|1\|BB, 4V51\|1\|DB, 4V67\|1\|DB, 4LNT\|1\|YB, 4LNT\|1\|RB, 4V51\|1\|BB, 1VY7\|1\|BB, 1VY7\|1\|DB	(2) 5F8K\|1\|2B, 5F8K\|1\|1B	(184) 4V6A\|1\|BB, 4V83\|1\|DB, 4V84\|1\|BB, 4V84\|1\|DB, 4V87\|1\|AB, 4V87\|1\|DB, 4V8A\|1\|AB, 4V8A\|1\|BB, 4V8C\|1\|AB, 4V8C\|1\|BB, 4V8E\|1\|AB, 4V8E\|1\|CB, 4V8F\|1\|AB, 4V8F\|1\|DB, 4V8H\|1\|BB, 4V83\|1\|BB, 4V7Z\|1\|DB, 4V6A\|1\|DB, 4V6F\|1\|AB, 4V6F\|1\|DB, 4V6G\|1\|BB, 4V6G\|1\|DB, 4V7J\|1\|AB, 4V7J\|1\|BB, 4V7K\|1\|AB, 4V7K\|1\|BB, 4V7M\|1\|BB, 4V7M\|1\|DB, 4V7P\|1\|BB, 4V7P\|1\|CB, 4V7Z\|1\|BB, 4V8H\|1\|DB, 4V8J\|1\|BB, 4V9B\|1\|DB, 4V9I\|1\|BB, 4V9I\|1\|DB, 4V9J\|1\|BB, 4V9J\|1\|DB, 4V9K\|1\|BB, 4V9K\|1\|DB, 4V9L\|1\|BB, 4V9L\|1\|DB, 4V9M\|1\|BB, 4V9M\|1\|DB, 4V9N\|1\|BB, 4V9N\|1\|DB, 4V9Q\|1\|AB, 4V9B\|1\|BB, 4V9A\|1\|DB, 4V8J\|1\|DB, 4V8N\|1\|BB, 4V8N\|1\|DB, 4V8O\|1\|BB, 4V8Q\|1\|AB, 4V8U\|1\|BB, 4V8U\|1\|DB, 4V8X\|1\|BB, 4V8X\|1\|DB, 4V95\|1\|BB, 4V95\|1\|DB, 4V97\|1\|BB, 4V97\|1\|DB, 4V9A\|1\|BB, 4V9Q\|1\|CB, 4V68\|1\|BB, 4L47\|1\|YB, 4TUB\|1\|RB, 4TUB\|1\|YB, 4TUC\|1\|RB, 4TUC\|1\|YB, 4TUD\|1\|RB, 4TUD\|1\|YB, 4TUE\|1\|RB, 4TUE\|1\|YB, 4V42\|1\|BB, 4V4I\|1\|x, 4V4J\|1\|x, 4V4P\|1\|AB, 4V4R\|1\|BB, 4V4S\|1\|BB, 4TUA\|1\|YB, 4TUA\|1\|RB, 4L71\|1\|RB, 4L71\|1\|YB, 4LEL\|1\|RB, 4LEL\|1\|YB, 4LFZ\|1\|RB, 4LFZ\|1\|YB, 4LSK\|1\|RB, 4LSK\|1\|YB, 4LT8\|1\|RB, 4LT8\|1\|YB, 4P6F\|1\|RB, 4P6

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	4V9H\|1\|BB	Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state	X-RAY DIFFRACTION	2.86	119
2	4V90\|1\|BB	Thermus thermophilus Ribosome	X-RAY DIFFRACTION	2.95	119
3	4V67\|1\|DB	Crystal structure of a translation termination complex formed with release factor RF2.	X-RAY DIFFRACTION	3	119
4	4V67\|1\|BB	Crystal structure of a translation termination complex formed with release factor RF2.	X-RAY DIFFRACTION	3	119
5	4LNT\|1\|RB	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome	X-RAY DIFFRACTION	2.94	120
6	4V8B\|1\|BB	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-RAY DIFFRACTION	3	122
7	4V8D\|1\|BB	Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).	X-RAY DIFFRACTION	3	122
8	4WSD\|1\|16	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.	X-RAY DIFFRACTION	2.95	122
9	4LNT\|1\|YB	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome	X-RAY DIFFRACTION	2.94	120
10	5E81\|1\|16	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair	X-RAY DIFFRACTION	2.95	122
11	1VY7\|1\|BB	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-RAY DIFFRACTION	2.8	120
12	4W2I\|1\|BB	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.7	120
13	5DOY\|1\|1B	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution	X-RAY DIFFRACTION	2.6	120
14	4W2H\|1\|BB	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site	X-RAY DIFFRACTION	2.7	120
15	4W2G\|1\|BB	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.55	120
16	4W2F\|1\|BB	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.4	120
17	4Y4P\|1\|1B	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-RAY DIFFRACTION	2.5	120
18	1VY5\|1\|BB	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-RAY DIFFRACTION	2.55	120
19	1VY4\|1\|BB	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-RAY DIFFRACTION	2.6	120
20	1VY6\|1\|BB	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-RAY DIFFRACTION	2.9	120
21	4V9R\|1\|BB	Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome	X-RAY DIFFRACTION	3	120
22	4Z8C\|1\|1B	Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin	X-RAY DIFFRACTION	2.9	120
23	5F8K\|1\|1B	Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome	X-RAY DIFFRACTION	2.8	120
24	4Z3S\|1\|1B	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution	X-RAY DIFFRACTION	2.65	120
25	4Y4O\|1\|1B	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution	X-RAY DIFFRACTION	2.3	120
26	5FDV\|1\|1B	Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome	X-RAY DIFFRACTION	2.8	120
27	5FDU\|1\|1B	Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome	X-RAY DIFFRACTION	2.9	121
28	4WQY\|1\|AB	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)	X-RAY DIFFRACTION	2.8	120
29	4WPO\|1\|AB	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state	X-RAY DIFFRACTION	2.8	120
30	4WQU\|1\|AB	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin	X-RAY DIFFRACTION	2.8	120
31	4WQF\|1\|AB	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state	X-RAY DIFFRACTION	2.8	120
32	4V8I\|1\|DB	Crystal structure of YfiA bound to the 70S ribosome.	X-RAY DIFFRACTION	2.7	120
33	4V8I\|1\|BB	Crystal structure of YfiA bound to the 70S ribosome.	X-RAY DIFFRACTION	2.7	120
34	4V8G\|1\|BB	Crystal structure of RMF bound to the 70S ribosome.	X-RAY DIFFRACTION	3	120
35	4V8G\|1\|DB	Crystal structure of RMF bound to the 70S ribosome.	X-RAY DIFFRACTION	3	120
36	4Y4O\|1\|2B	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution	X-RAY DIFFRACTION	2.3	120
37	5FDV\|1\|2B	Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome	X-RAY DIFFRACTION	2.8	120
38	5FDU\|1\|2B	Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome	X-RAY DIFFRACTION	2.9	120
39	4W2I\|1\|DB	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.7	120
40	4W2F\|1\|DB	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.4	120
41	4W2G\|1\|DB	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.55	120
42	1VY5\|1\|DB	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-RAY DIFFRACTION	2.55	120
43	4V9R\|1\|DB	Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome	X-RAY DIFFRACTION	3	120
44	4Z3S\|1\|2B	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution	X-RAY DIFFRACTION	2.65	120
45	4WPO\|1\|CB	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state	X-RAY DIFFRACTION	2.8	120
46	4WQY\|1\|CB	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)	X-RAY DIFFRACTION	2.8	120
47	4WQF\|1\|CB	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state	X-RAY DIFFRACTION	2.8	120
48	4WQU\|1\|CB	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin	X-RAY DIFFRACTION	2.8	120
49	5F8K\|1\|2B	Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome	X-RAY DIFFRACTION	2.8	120
50	4W2H\|1\|DB	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site	X-RAY DIFFRACTION	2.7	120
51	4Z8C\|1\|2B	Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin	X-RAY DIFFRACTION	2.9	120
52	1VY6\|1\|DB	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-RAY DIFFRACTION	2.9	120
53	1VY4\|1\|DB	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-RAY DIFFRACTION	2.6	120
54	4Y4P\|1\|2B	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-RAY DIFFRACTION	2.5	120
55	5DOY\|1\|2B	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution	X-RAY DIFFRACTION	2.6	120
56	1VY7\|1\|DB	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-RAY DIFFRACTION	2.8	120
57	4W2E\|1\|B	Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome	X-RAY DIFFRACTION	2.9	120
58	4V7L\|1\|DB	The structures of viomycin bound to the 70S ribosome.	X-RAY DIFFRACTION	3	118
59	4V7L\|1\|BB	The structures of viomycin bound to the 70S ribosome.	X-RAY DIFFRACTION	3	118
60	4V51\|1\|BB	Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin	X-RAY DIFFRACTION	2.8	119
61	4V51\|1\|DB	Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin	X-RAY DIFFRACTION	2.8	119
62	4V7Y\|1\|BB	Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.	X-RAY DIFFRACTION	3	119
63	4V7Y\|1\|DB	Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.	X-RAY DIFFRACTION	3	119
64	4V7X\|1\|BB	Structure of the Thermus thermophilus ribosome complexed with erythromycin.	X-RAY DIFFRACTION	3	119
65	4V7X\|1\|DB	Structure of the Thermus thermophilus ribosome complexed with erythromycin.	X-RAY DIFFRACTION	3	119
66	4V7W\|1\|DB	Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.	X-RAY DIFFRACTION	3	119
67	4V7W\|1\|BB	Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.	X-RAY DIFFRACTION	3	119
68	4V8B\|1\|DB	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-RAY DIFFRACTION	3	122
69	4V8D\|1\|DB	Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).	X-RAY DIFFRACTION	3	122
70	4WSD\|1\|1J	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.	X-RAY DIFFRACTION	2.95	122
71	5E81\|1\|1J	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair	X-RAY DIFFRACTION	2.95	122

Equivalence class NR_3.0_42622.14 Obsolete

Release history

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