#IFECompound(s)RNA source organismTitleMethodResolutionDate
14W2G|1|BB (rep)5S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.552014-10-15
24WQF|1|AB5S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-RAY DIFFRACTION2.82015-01-28
34WQY|1|AB5S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)X-RAY DIFFRACTION2.82015-01-28
44V9R|1|BB5S Ribosomal RNAThermus thermophilusCrystal structure of antibiotic DITYROMYCIN bound to 70S ribosomeX-RAY DIFFRACTION32014-07-09
51VY4|1|BB5S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.62014-08-20
64WPO|1|AB5S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-RAY DIFFRACTION2.82015-01-28
71VY7|1|BB5S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.82014-08-20
81VY6|1|BB5S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.92014-08-20
94W2H|1|DB5S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-RAY DIFFRACTION2.72014-10-15
104V8D|1|BB5S RIBOSOMAL RNAThermus thermophilusStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-RAY DIFFRACTION32014-07-09
114V8B|1|BB5S RIBOSOMAL RNAThermus thermophilusCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-RAY DIFFRACTION32014-07-09
124V8D|1|DB5S RIBOSOMAL RNAThermus thermophilusStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-RAY DIFFRACTION32014-07-09
134WQU|1|AB5S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-RAY DIFFRACTION2.82015-01-28
144W2E|1|B5S Ribosomal RNAThermus thermophilusCrystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.92014-10-01
154W2I|1|BB5S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.72014-10-15
164W2F|1|BB5S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.42014-10-15
171VY5|1|BB5S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.552014-08-20
184WQY|1|CB5S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)X-RAY DIFFRACTION2.82015-01-28
194WPO|1|CB5S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-RAY DIFFRACTION2.82015-01-28
204V9R|1|DB5S Ribosomal RNAThermus thermophilusCrystal structure of antibiotic DITYROMYCIN bound to 70S ribosomeX-RAY DIFFRACTION32014-07-09
214LNT|1|RB5S rRNAThermus thermophilusCrystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION2.942014-08-06
224LNT|1|YB5S rRNAThermus thermophilusCrystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION2.942014-08-06
234W2H|1|BB5S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-RAY DIFFRACTION2.72014-10-15
244WQU|1|CB5S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-RAY DIFFRACTION2.82015-01-28
254WQF|1|CB5S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-RAY DIFFRACTION2.82015-01-28
264V8B|1|DB5S RIBOSOMAL RNAThermus thermophilusCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-RAY DIFFRACTION32014-07-09
274V8I|1|BB5S Ribosomal RNAThermus thermophilusCrystal structure of YfiA bound to the 70S ribosome.X-RAY DIFFRACTION2.72014-07-09
281VY5|1|DB5S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.552014-08-20
294W2G|1|DB5S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.552014-10-15
304W2I|1|DB5S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.72014-10-15
314V67|1|BB5S RRNAThermus thermophilusCrystal structure of a translation termination complex formed with release factor RF2.X-RAY DIFFRACTION32014-07-09
324V67|1|DB5S RRNAThermus thermophilusCrystal structure of a translation termination complex formed with release factor RF2.X-RAY DIFFRACTION32014-07-09
334V8G|1|BB5S Ribosomal RNAThermus thermophilusCrystal structure of RMF bound to the 70S ribosome.X-RAY DIFFRACTION32014-07-09
344V8I|1|DB5S Ribosomal RNAThermus thermophilusCrystal structure of YfiA bound to the 70S ribosome.X-RAY DIFFRACTION2.72014-07-09
354V7X|1|BB5S ribosomal RNAThermus thermophilusStructure of the Thermus thermophilus ribosome complexed with erythromycin.X-RAY DIFFRACTION32014-07-09
364V8G|1|DB5S Ribosomal RNAThermus thermophilusCrystal structure of RMF bound to the 70S ribosome.X-RAY DIFFRACTION32014-07-09
374W2F|1|DB5S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.42014-10-15
384V7L|1|BB5S ribosomal RNAThermus thermophilusThe structures of viomycin bound to the 70S ribosome.X-RAY DIFFRACTION32014-07-09
394V9H|1|BB5S ribosomal RNAThermus thermophilusCrystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase stateX-RAY DIFFRACTION2.862014-07-09
404V7Y|1|BB5S ribosomal RNAThermus thermophilusStructure of the Thermus thermophilus 70S ribosome complexed with azithromycin.X-RAY DIFFRACTION32014-07-09
414V7Y|1|DB5S ribosomal RNAThermus thermophilusStructure of the Thermus thermophilus 70S ribosome complexed with azithromycin.X-RAY DIFFRACTION32014-07-09
424V7X|1|DB5S ribosomal RNAThermus thermophilusStructure of the Thermus thermophilus ribosome complexed with erythromycin.X-RAY DIFFRACTION32014-07-09
431VY4|1|DB5S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.62014-08-20
444V51|1|BB5S RIBOSOMAL RNAThermus thermophilusStructure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-RAY DIFFRACTION2.82014-07-09
454V90|1|BB5S RIBOSOMAL RNAThermus thermophilusThermus thermophilus RibosomeX-RAY DIFFRACTION2.952014-07-09
464V7W|1|BB5S ribosomal RNAThermus thermophilusStructure of the Thermus thermophilus ribosome complexed with chloramphenicol.X-RAY DIFFRACTION32014-07-09
474V51|1|DB5S RIBOSOMAL RNAThermus thermophilusStructure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-RAY DIFFRACTION2.82014-07-09
484V7W|1|DB5S ribosomal RNAThermus thermophilusStructure of the Thermus thermophilus ribosome complexed with chloramphenicol.X-RAY DIFFRACTION32014-07-09
494V7L|1|DB5S ribosomal RNAThermus thermophilusThe structures of viomycin bound to the 70S ribosome.X-RAY DIFFRACTION32014-07-09
501VY6|1|DB5S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.92014-08-20
511VY7|1|DB5S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.82014-08-20

Release history

Release2.122.132.14
Date2015-02-272015-03-062015-03-13

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.0_42622.4NR_all_42622.32.12(51) 4LNT|1|YB, 4V67|1|DB, 1VY4|1|DB, 4V8G|1|DB, 1VY4|1|BB, 4V8D|1|BB, 4W2H|1|BB, 4V8I|1|DB, 4V8B|1|DB, 1VY6|1|BB, 4V7X|1|DB, 4V8G|1|BB, 4V7W|1|DB, 4V8B|1|BB, 4V9R|1|BB, 1VY5|1|DB, 4W2I|1|BB, 4V7X|1|BB, 4WPO|1|AB, 4V51|1|DB, 1VY7|1|BB, 4V67|1|BB, 4V8D|1|DB, 4V7W|1|BB, 4W2H|1|DB, 4W2I|1|DB, 4V9R|1|DB, 4V7Y|1|DB, 4WQY|1|AB, 4WQF|1|CB, 1VY5|1|BB, 4W2G|1|BB, 4WPO|1|CB, 4V7Y|1|BB, 4WQU|1|CB, 4WQF|1|AB, 4W2F|1|DB, 4W2F|1|BB, 4WQY|1|CB, 4V7L|1|DB, 4V90|1|BB, 4WQU|1|AB, 4W2G|1|DB, 4W2E|1|B, 1VY6|1|DB, 4LNT|1|RB, 4V51|1|BB, 4V7L|1|BB, 1VY7|1|DB, 4V8I|1|BB, 4V9H|1|BB(0) (128) 4V5P|1|DB, 4V9Q|1|AB, 4V5L|1|BB, 4V5K|1|BB, 4V84|1|BB, 4V9J|1|BB, 4V8X|1|BB, 4P6F|1|RB, 4V7J|1|AB, 4L47|1|RB, 4V4T|1|BB, 4V5E|1|BB, 4V5G|1|BB, 4V8N|1|BB, 4V8U|1|BB, 4V63|1|DB, 4V7K|1|AB, 4L71|1|RB, 4V95|1|BB, 4V5N|1|BB, 4V7P|1|BB, 4W29|1|BB, 1VVJ|1|RB, 4V5F|1|BB, 4V9I|1|BB, 4V5D|1|BB, 4V42|1|BB, 4LT8|1|RB, 4V87|1|AB, 4V9K|1|BB, 4V5Q|1|DB, 4P70|1|RB, 4V5S|1|DB, 4V9A|1|BB, 4V8F|1|AB, 4LFZ|1|RB, 4V97|1|BB, 4V5J|1|BB, 4LEL|1|RB, 4V7Z|1|BB, 4V8A|1|AB, 4V83|1|BB, 4V8H|1|BB, 4V5A|1|BB, 4V7M|1|BB, 4V8C|1|AB, 4V9N|1|BB, 4V9B|1|BB, 4LSK|1|RB, 4V6F|1|AB, 4V9L|1|BB, 4V4R|1|BB, 4V7P|1|CB, 4V9A|1|DB, 4V8N|1|DB, 4V9L|1|DB, 4LFZ|1|YB, 4V6A|1|DB, 4V4I|1|x, 4V5A|1|DB, 4V6G|1|DB, 4V5D|1|DB, 4V8F|1|DB, 4V8J|1|DB, 4V5R|1|BB, 4V5G|1|DB, 4V6F|1|DB, 4WT8|1|Ds, 4V8Q|1|AB, 4V5J|1|DB, 4V7J|1|BB, 4V9N|1|DB, 4V9S|1|DB, 4V5C|1|DB, 4V97|1|DB, 4V4Z|1|BB, 4LT8|1|YB, 4W29|1|DB, 4LEL|1|YB, 4V7Z|1|DB, 4V9B|1|DB, 4V5M|1|BB, 4LSK|1|YB, 4V5Q|1|BB, 4V8X|1|DB, 4V8A|1|BB, 4L47|1|YB, 4V8U|1|DB, 4V5E|1|DB, 4V5K|1|DB, 1VVJ|1|YB, 4V7K|1|BB, 4V5F|1|DB, 4V

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14V9H|1|BBCrystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase stateX-RAY DIFFRACTION2.86119
24V90|1|BBThermus thermophilus RibosomeX-RAY DIFFRACTION2.95119
34V67|1|DBCrystal structure of a translation termination complex formed with release factor RF2.X-RAY DIFFRACTION3119
44V67|1|BBCrystal structure of a translation termination complex formed with release factor RF2.X-RAY DIFFRACTION3119
54LNT|1|RBCrystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION2.94120
64LNT|1|YBCrystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION2.94120
74V8B|1|BBCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-RAY DIFFRACTION3122
84V8D|1|BBStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-RAY DIFFRACTION3122
94V8G|1|DBCrystal structure of RMF bound to the 70S ribosome.X-RAY DIFFRACTION3120
104V8G|1|BBCrystal structure of RMF bound to the 70S ribosome.X-RAY DIFFRACTION3120
114V8I|1|BBCrystal structure of YfiA bound to the 70S ribosome.X-RAY DIFFRACTION2.7120
124V8I|1|DBCrystal structure of YfiA bound to the 70S ribosome.X-RAY DIFFRACTION2.7120
134WQF|1|ABCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-RAY DIFFRACTION2.8120
144WQU|1|ABCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-RAY DIFFRACTION2.8120
154WPO|1|ABCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-RAY DIFFRACTION2.8120
164WQY|1|ABCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)X-RAY DIFFRACTION2.8120
174V9R|1|BBCrystal structure of antibiotic DITYROMYCIN bound to 70S ribosomeX-RAY DIFFRACTION3120
184W2F|1|BBCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.4120
194W2G|1|BBCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.55120
201VY5|1|BBCrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.55120
211VY4|1|BBCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.6120
221VY6|1|BBCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.9120
234W2H|1|BBCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-RAY DIFFRACTION2.7120
241VY7|1|BBCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.8120
254W2I|1|BBCrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.7120
264W2I|1|DBCrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.7120
274W2F|1|DBCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.4120
284W2G|1|DBCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.55120
291VY5|1|DBCrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.55120
304V9R|1|DBCrystal structure of antibiotic DITYROMYCIN bound to 70S ribosomeX-RAY DIFFRACTION3120
314W2H|1|DBCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-RAY DIFFRACTION2.7120
324WQU|1|CBCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-RAY DIFFRACTION2.8120
334WPO|1|CBCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-RAY DIFFRACTION2.8120
344WQY|1|CBCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)X-RAY DIFFRACTION2.8120
354WQF|1|CBCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-RAY DIFFRACTION2.8120
364W2E|1|BCrystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.9120
371VY7|1|DBCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.8120
381VY4|1|DBCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.6120
391VY6|1|DBCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.9120
404V7L|1|DBThe structures of viomycin bound to the 70S ribosome.X-RAY DIFFRACTION3118
414V7L|1|BBThe structures of viomycin bound to the 70S ribosome.X-RAY DIFFRACTION3118
424V51|1|BBStructure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-RAY DIFFRACTION2.8119
434V51|1|DBStructure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-RAY DIFFRACTION2.8119
444V7Y|1|BBStructure of the Thermus thermophilus 70S ribosome complexed with azithromycin.X-RAY DIFFRACTION3119
454V7Y|1|DBStructure of the Thermus thermophilus 70S ribosome complexed with azithromycin.X-RAY DIFFRACTION3119
464V7X|1|BBStructure of the Thermus thermophilus ribosome complexed with erythromycin.X-RAY DIFFRACTION3119
474V7X|1|DBStructure of the Thermus thermophilus ribosome complexed with erythromycin.X-RAY DIFFRACTION3119
484V7W|1|BBStructure of the Thermus thermophilus ribosome complexed with chloramphenicol.X-RAY DIFFRACTION3119
494V7W|1|DBStructure of the Thermus thermophilus ribosome complexed with chloramphenicol.X-RAY DIFFRACTION3119
504V8B|1|DBCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-RAY DIFFRACTION3122
514V8D|1|DBStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-RAY DIFFRACTION3122