RNA 3D Hub //

Equivalence class NR_3.0_56726.8 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14V9P|1|FA (rep)Small subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
24YBB|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177High-resolution structure of the Escherichia coli ribosomeX-ray diffraction2.12015-03-18
34V9O|1|FASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
44U1U|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to quinupristin.X-ray diffraction2.952014-07-30
54V9O|1|BASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
65AFI|1|aSmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF001772.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMElectron microscopy2.92015-03-11
74U20|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to flopristin.X-ray diffraction2.92014-07-30
84V9P|1|BASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
94U1U|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to quinupristin.X-ray diffraction2.952014-07-30
104U26|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-ray diffraction2.82014-07-30
114U24|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to dalfopristin.X-ray diffraction2.92014-07-30
124YBB|1|BASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177High-resolution structure of the Escherichia coli ribosomeX-ray diffraction2.12015-03-18
134U20|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to flopristin.X-ray diffraction2.92014-07-30
144U27|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to flopristin and linopristin.X-ray diffraction2.82014-07-30
154V9P|1|HASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
164U25|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to virginiamycin M1.X-ray diffraction2.92014-07-30
174V9O|1|DASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
184U1V|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to linopristin.X-ray diffraction32014-07-30
194WOI|1|DASmall subunit ribosomal RNA16S ribosomal RNA, Messenger RNAEscherichia coliBacteriaRF001774,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-ray diffraction32015-08-05
204V9P|1|DASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
214V9D|1|BASmall subunit ribosomal RNA16S rRNA, messenger RNAEscherichia coliBacteriaRF00177Structures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-ray diffraction32014-07-09
224U27|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to flopristin and linopristin.X-ray diffraction2.82014-07-30
234U1V|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to linopristin.X-ray diffraction32014-07-30
244V9D|1|AASmall subunit ribosomal RNA16S rRNA, messenger RNAEscherichia coliBacteriaRF00177Structures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-ray diffraction32014-07-09
254U25|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to virginiamycin M1.X-ray diffraction2.92014-07-30
264WOI|1|AASmall subunit ribosomal RNA16S ribosomal RNA, Messenger RNAEscherichia coliBacteriaRF001774,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-ray diffraction32015-08-05
274U26|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-ray diffraction2.82014-07-30
284U24|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to dalfopristin.X-ray diffraction2.92014-07-30
294V9O|1|HASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09

Release history

Release2.582.59
Date2016-01-152016-01-22

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.0_56726.8NR_all_56726.72.58(29) 4V9D|1|AA, 4U20|1|AA, 4V9P|1|DA, 4U27|1|CA, 4U1V|1|CA, 4V9P|1|BA, 4V9O|1|BA, 4U24|1|AA, 4V9P|1|HA, 4V9D|1|BA, 4U20|1|CA, 4V9P|1|FA, 4U25|1|AA, 4WOI|1|DA, 4U24|1|CA, 4WOI|1|AA, 4U26|1|AA, 4YBB|1|BA, 4V9O|1|FA, 4U1U|1|CA, 4U25|1|CA, 4YBB|1|AA, 4V9O|1|DA, 4U1U|1|AA, 4U27|1|AA, 4U26|1|CA, 5AFI|1|a, 4V9O|1|HA, 4U1V|1|AA(0) (102) 4V5H|1|AA, 4V7S|1|AA, 4V85|1|AA, 4V66|1|A1, 4V7V|1|AA, 4WWW|1|QA, 4V5B|1|BA, 4V7D|1|BA, 4V64|1|CA, 4V7U|1|AA, 4WF1|1|AA, 4V7B|1|AA, 4V7T|1|AA, 4V9C|1|AA, 4V79|1|AA, 4V50|1|AA, 4V47|1|BA, 4V54|1|AA, 4V4V|1|AA, 4V77|1|AA, 4A2I|1|A, 4V53|1|AA, 4V4Q|1|AA, 4V75|1|AA, 3J9Z|1|SA, 4V4H|1|AA, 4V52|1|AA, 4V73|1|AA, 3J2H|1|N, 3J2F|1|N, 3J2D|1|N, 4V6M|1|AA, 4V6C|1|AA, 4V6S|1|BA, 4V6K|1|BA, 3J2B|1|N, 4V6Q|1|AA, 4V6E|1|AA, 4V6D|1|AA, 4V6O|1|AA, 4V5Y|1|CA, 3DG2|1|A, 2YKR|1|A, 4V55|1|CA, 4V78|1|AA, 4V7S|1|CA, 4V5B|1|DA, 4V7I|1|BA, 4V7V|1|CA, 4V76|1|AA, 4V7C|1|AA, 4V7U|1|CA, 4V74|1|AA, 4V4H|1|CA, 3J9Y|1|a, 4V7A|1|AA, 4V7T|1|CA, 4V50|1|CA, 4V48|1|BA, 4V72|1|AA, 3J2G|1|N, 4V4W|1|AA, 4ADV|1|A, 4V70|1|AA, 3J2E|1|N, 3JA1|1|SA, 4V4Q|1|CA, 4V6Y|1|AA, 3J2C|1|N, 3J2A|1|N, 3J28|1|N, 4V6D|1|CA, 4V64|1|AA, 4V6N|1|BA, 4V6C|1|CA, 3DG4|1|A, 4V5Y|1|AA, 4V6L|1|AA, 4V69|1|AA, 3DG0|1|A, 4V65|1|A1, 4V6E|1|CA, 4V57|1|CA, 4V56|1|CA, 4WF1|1|CA, 4V9C|1|CA, 4V89|1|AA, 4V71|1|AA, 4V6Z|1|AA, 4V6V|1|AA, 3J29|1|N, 3DG5|1|A, 4V57|1|AA, 4V56|1|AA, 4V55|1|A

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14V9P|1|FAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
24V9P|1|HAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
34V9O|1|HAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
44V9P|1|BAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
54V9P|1|DAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
64V9O|1|DAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
74YBB|1|AAHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.11523
84U24|1|AACrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.91538
94U26|1|AACrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.81538
104U25|1|AACrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.91538
114U27|1|AACrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.81538
124U1V|1|AACrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION31538
134U20|1|AACrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.91538
144U1U|1|AACrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.951538
154YBB|1|BAHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.11522
164U24|1|CACrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.91539
174U26|1|CACrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.81539
184U25|1|CACrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.91539
194U27|1|CACrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.81539
204U1V|1|CACrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION31539
214U20|1|CACrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.91539
224U1U|1|CACrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.951539
234V9D|1|AAStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION31538
244V9O|1|FAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
254V9O|1|BAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
264WOI|1|AA4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION31538
275AFI|1|a2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.91528
284WOI|1|DA4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION31539
294V9D|1|BAStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION31539
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