NR_3.0_56726.85

Members (97)
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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	#NTs	Date
1	5J7L\|1\|AA (rep)	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-ray diffraction	3	1534	2016-07-27
2	4YBB\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	1534	2015-03-18
3	4WOI\|1\|DA	Small subunit ribosomal RNA	16S ribosomal RNA, Messenger RNA	Escherichia coli	Bacteria	RF00177	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-ray diffraction	3	1539	2015-08-05
4	4WOI\|1\|AA	Small subunit ribosomal RNA	16S ribosomal RNA, Messenger RNA	Escherichia coli	Bacteria	RF00177	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-ray diffraction	3	1538	2015-08-05
5	4V9P\|1\|FA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	1533	2014-07-09
6	4V9O\|1\|BA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	1533	2014-07-09
7	5J7L\|1\|BA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-ray diffraction	3	1533	2016-07-27
8	4V9P\|1\|HA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	1533	2014-07-09
9	4V9P\|1\|DA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	1533	2014-07-09
10	4V9P\|1\|BA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	1533	2014-07-09
11	4V9O\|1\|FA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	1533	2014-07-09
12	5J91\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-ray diffraction	2.96	1534	2016-07-06
13	6I7V\|1\|AA	Small subunit ribosomal RNA	16S ribosmal RNA	Escherichia coli	Bacteria	RF00177	Ribosomal protein paralogs bL31 and bL36	X-ray diffraction	2.9	1533	2018-12-05
14	4V9O\|1\|DA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	1533	2014-07-09
15	4U27\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-ray diffraction	2.8	1538	2014-07-30
16	4YBB\|1\|BA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	1533	2015-03-18
17	4U1U\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to quinupristin.	X-ray diffraction	2.95	1538	2014-07-30
18	4U26\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-ray diffraction	2.8	1538	2014-07-30
19	4V9D\|1\|AA	Small subunit ribosomal RNA	16S rRNA, messenger RNA	Escherichia coli	Bacteria	RF00177	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-ray diffraction	3	1538	2014-07-09
20	6I7V\|1\|BA	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Ribosomal protein paralogs bL31 and bL36	X-ray diffraction	2.9	1533	2018-12-05
21	4U24\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-ray diffraction	2.9	1538	2014-07-30
22	4U25\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-ray diffraction	2.9	1538	2014-07-30
23	4V9D\|1\|BA	Small subunit ribosomal RNA	16S rRNA, messenger RNA	Escherichia coli	Bacteria	RF00177	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-ray diffraction	3	1539	2014-07-09
24	4U27\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-ray diffraction	2.8	1539	2014-07-30
25	4V9O\|1\|HA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	1533	2014-07-09
26	4U20\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to flopristin.	X-ray diffraction	2.9	1538	2014-07-30
27	4U1U\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to quinupristin.	X-ray diffraction	2.95	1539	2014-07-30
28	4U1V\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to linopristin.	X-ray diffraction	3	1538	2014-07-30
29	4U25\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-ray diffraction	2.9	1539	2014-07-30
30	4U26\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-ray diffraction	2.8	1539	2014-07-30
31	5J91\|1\|BA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-ray diffraction	2.96	1533	2016-07-06
32	4U24\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-ray diffraction	2.9	1539	2014-07-30
33	4U1V\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to linopristin.	X-ray diffraction	3	1539	2014-07-30
34	4U20\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to flopristin.	X-ray diffraction	2.9	1539	2014-07-30
35	5J5B\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the WT E coli ribosome bound to tetracycline	X-ray diffraction	2.8	1534	2016-07-27
36	5J5B\|1\|BA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the WT E coli ribosome bound to tetracycline	X-ray diffraction	2.8	1533	2016-07-27
37	7K00\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the Bacterial Ribosome at 2 Angstrom Resolution	Electron microscopy	1.98	1519	2020-09-23
38	7S1H\|1\|C	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Wild-type Escherichia coli ribosome with antibiotic linezolid	Electron microscopy	2.35	1540	2021-11-17
39	7N1P\|1\|16	Small subunit ribosomal RNA	16S rRNA, mRNA	Escherichia coli K-12	Bacteria	RF00177	Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation	Electron microscopy	2.33	1542	2021-07-14
40	7S1K\|1\|C	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid	Electron microscopy	2.42	1540	2022-01-19
41	7S1J\|1\|C	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Wild-type Escherichia coli ribosome with antibiotic radezolid	Electron microscopy	2.47	1540	2022-03-02
42	7S1I\|1\|C	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Wild-type Escherichia coli stalled ribosome with antibiotic radezolid	Electron microscopy	2.48	1540	2022-03-02
43	7S1G\|1\|C	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	wild-type Escherichia coli stalled ribosome with antibiotic linezolid	Electron microscopy	2.48	1540	2021-11-17
44	7O1A\|1\|AA	Small subunit ribosomal RNA	Ribosomal RNA 16S	Escherichia coli K-12	Bacteria	RF00177	Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan	Electron microscopy	2.4	1534	2021-09-01
45	7N2U\|1\|16	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	Elongating 70S ribosome complex in a hybrid-H1 pre-translocation (PRE-H1) conformation	Electron microscopy	2.53	1534	2021-07-14
46	7N2V\|1\|16	Small subunit ribosomal RNA	16S rRNA, mRNA	Escherichia coli K-12	Bacteria	RF00177	Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)	Electron microscopy	2.54	1534	2021-07-14
47	6YSS\|1\|a	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis state	Electron microscopy	2.6	1540	2020-08-19
48	7UG7\|1\|16	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B	Electron microscopy	2.58	1514	2022-05-18
49	6XZB\|1\|A1	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).	Electron microscopy	2.54	1523	2020-11-04
50	7NWT\|1\|2	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)	Electron microscopy	2.66	1534	2021-12-15
51	7N30\|1\|16	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	Elongating 70S ribosome complex in a hybrid-H2* pre-translocation (PRE-H2*) conformation	Electron microscopy	2.66	1526	2021-07-14
52	7N31\|1\|16	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	Elongating 70S ribosome complex in a post-translocation (POST) conformation	Electron microscopy	2.69	1533	2021-07-14
53	6TC3\|1\|16S1	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)	Electron microscopy	2.7	1534	2020-01-01
54	6TBV\|1\|16S1	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)	Electron microscopy	2.7	1534	2020-01-01
55	7N2C\|1\|16	Small subunit ribosomal RNA	16S rRNA, Chains: mR	Escherichia coli K-12	Bacteria	RF00177	Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)	Electron microscopy	2.72	1534	2021-07-14
56	6XZA\|1\|A1	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).	Electron microscopy	2.66	1523	2020-11-04
57	6Y69\|1\|a	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX	Electron microscopy	2.86	1539	2020-07-01
58	7O1C\|1\|AA	Small subunit ribosomal RNA	Ribosomal RNA 16S	Escherichia coli K-12	Bacteria	RF00177	Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome-RF2 complex stalled in response to L-tryptophan	Electron microscopy	2.6	1534	2021-09-01
59	7NSO\|1\|a	Small subunit ribosomal RNA	16S rRNA (1540-MER)	Escherichia coli	Bacteria	RF00177	Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with P-tRNA	Electron microscopy	2.9	1540	2021-07-14
60	7ST2\|1\|3	Small subunit ribosomal RNA	16S rRNA, mRNA	Escherichia coli K-12	Bacteria	RF00177	Post translocation, non-rotated 70S ribosome with EF-G dissociated (Structure VII)	Electron microscopy	2.9	1539	2022-02-23
61	5AFI\|1\|a	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM	Electron microscopy	2.9	1539	2015-03-11
62	7BOH\|1\|A	Small subunit ribosomal RNA	RNA (1527-MER)	Escherichia coli K-12	Bacteria	RF00177	Complete Bacterial 30S ribosomal subunit assembly complex state E (+RbfA)(Consensus Refinement)	Electron microscopy	2.82	1527	2021-12-08
63	7OT5\|1\|2	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	CspA-70 cotranslational folding intermediate 1	Electron microscopy	2.9	1534	2022-01-19
64	7OTC\|1\|a	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli BL21(DE3)	Bacteria	RF00177	Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B	Electron microscopy	2.9	1533	2022-05-11
65	7B5K\|1\|a	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.	Electron microscopy	2.9	1533	2021-05-26
66	5NWY\|1\|0	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex	Electron microscopy	2.9	1539	2017-07-19
67	7OIZ\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	Cryo-EM structure of 70S ribosome stalled with TnaC peptide	Electron microscopy	2.9	1519	2021-09-15
68	7P3K\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	Cryo-EM structure of 70S ribosome stalled with TnaC peptide (control)	Electron microscopy	2.9	1519	2021-10-27
69	7ST6\|1\|3	Small subunit ribosomal RNA	16S rRNA, mRNA	Escherichia coli K-12	Bacteria	RF00177	Pre translocation, non-rotated 70S ribosome (Structure I)	Electron microscopy	3	1539	2022-02-23
70	6WD0\|1\|3	Small subunit ribosomal RNA	16S ribosomal RNA, mRNA	Escherichia coli	Bacteria	RF00177	Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-A)	Electron microscopy	3	1539	2020-07-01
71	6H4N\|1\|a	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome	Electron microscopy	3	1534	2018-09-05
72	6WDE\|1\|3	Small subunit ribosomal RNA	16S ribosomal RNA, mRNA	Escherichia coli	Bacteria	RF00177	Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-B)	Electron microscopy	3	1539	2020-07-01
73	6ORE\|1\|2	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Release complex 70S	Electron microscopy	2.9	1534	2019-06-19
74	5WDT\|1\|a	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	70S ribosome-EF-Tu H84A complex with GppNHp	Electron microscopy	3	1540	2018-04-25
75	5WFS\|1\|a	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)	Electron microscopy	3	1540	2018-05-02
76	7O19\|1\|AA	Small subunit ribosomal RNA	Ribosomal RNA 16S	Escherichia coli K-12	Bacteria	RF00177	Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophan	Electron microscopy	2.9	1534	2021-09-01
77	7OIF\|1\|2	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	CspA-27 cotranslational folding intermediate 2	Electron microscopy	3	1534	2022-01-19
78	7OII\|1\|2	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	CspA-70 cotranslational folding intermediate 2	Electron microscopy	3	1534	2022-01-19
79	7BOE\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	Bacterial 30S ribosomal subunit assembly complex state M (Consensus refinement)	Electron microscopy	2.9	1534	2021-12-08
80	5MDV\|1\|2	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)	Electron microscopy	2.97	1534	2016-12-14
81	7NAX\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Complete Bacterial 30S ribosomal subunit assembly complex state I (Consensus Refinement)	Electron microscopy	2.96	1526	2021-12-08
82	6ZTP\|1\|AA	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	E. coli 70S-RNAP expressome complex in uncoupled state 6	Electron microscopy	3	1533	2020-09-16
83	6ZU1\|1\|AA	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	E. coli 70S-RNAP expressome complex in uncoupled state 2	Electron microscopy	3	1533	2020-09-16
84	6ZTO\|1\|AA	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	E. coli 70S-RNAP expressome complex in uncoupled state 1	Electron microscopy	3	1533	2020-09-23
85	7NAR\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	Complete Bacterial 30S ribosomal subunit assembly complex state F (+RsgA)(Consensus Refinement)	Electron microscopy	3	1534	2021-12-08
86	7OE0\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli BW25113	Bacteria	RF00177	E. coli pre-30S delta rbfA ribosomal subunit class F	Electron microscopy	2.69	1510	2021-07-14
87	5IQR\|1\|2	Small subunit ribosomal RNA	SSU rRNA	Escherichia coli	Bacteria	RF00177	Structure of RelA bound to the 70S ribosome	Electron microscopy	3	1533	2016-05-04
88	7BOG\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	Bacterial 30S ribosomal subunit assembly complex state E (body domain)	Electron microscopy	2.75	1071	2021-07-07
89	7BOD\|1\|A	Small subunit ribosomal RNA	16S rRNA (body domain of 30S subunit)	Escherichia coli K-12	Bacteria	RF00177	Bacterial 30S ribosomal subunit assembly complex state M (body domain)	Electron microscopy	2.88	1078	2021-07-07
90	7BOF\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	Bacterial 30S ribosomal subunit assembly complex state I (body domain)	Electron microscopy	2.92	1070	2021-07-07
91	7BOI\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	Bacterial 30S ribosomal subunit assembly complex state F (multibody refinement for body domain of 30S ribosome)	Electron microscopy	2.98	1078	2021-07-07
92	7PJS\|1\|a	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)	Electron microscopy	2.35	662	2021-10-20
93	7OI0\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli BW25113	Bacteria	RF00177	E.coli delta rbfA pre-30S ribosomal subunit class D	Electron microscopy	2.76	963	2021-07-14
94	7AF8\|1\|1	Small subunit ribosomal RNA	16SrRNA (head domain of the 30S ribosome	Escherichia coli	Bacteria	RF00177	Bacterial 30S ribosomal subunit assembly complex state E (head domain)	Electron microscopy	2.75	456	2021-07-07
95	7AF3\|1\|1	Small subunit ribosomal RNA	16S rRNA (head)	Escherichia coli	Bacteria	RF00177	Bacterial 30S ribosomal subunit assembly complex state M (head domain)	Electron microscopy	2.82	456	2021-07-07
96	7AF5\|1\|1	Small subunit ribosomal RNA	16SrRNA (head domain of the 30S ribosome)	Escherichia coli	Bacteria	RF00177	Bacterial 30S ribosomal subunit assembly complex state I (head domain)	Electron microscopy	2.96	456	2021-07-07
97	7AFA\|1\|1	Small subunit ribosomal RNA	16SrRNA (head domain of the 30S ribosome)	Escherichia coli	Bacteria	RF00177	Bacterial 30S ribosomal subunit assembly complex state F (head domain)	Electron microscopy	2.95	456	2021-07-07

Release history

Release	3.231
Date	2022-05-18

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_3.0_56726.85	NR_3.0_56726.84	3.231	(96) 4U1U\|1\|AA, 4U1U\|1\|CA, 4U1V\|1\|AA, 4U1V\|1\|CA, 4U20\|1\|AA, 4U20\|1\|CA, 4U24\|1\|AA, 4U24\|1\|CA, 4U25\|1\|AA, 4U25\|1\|CA, 4U26\|1\|AA, 4U26\|1\|CA, 4U27\|1\|AA, 4U27\|1\|CA, 4V9D\|1\|AA, 4V9D\|1\|BA, 4V9O\|1\|BA, 4V9O\|1\|DA, 4V9O\|1\|FA, 4V9O\|1\|HA, 4V9P\|1\|BA, 4V9P\|1\|DA, 4V9P\|1\|FA, 4V9P\|1\|HA, 4WOI\|1\|AA, 4WOI\|1\|DA, 4YBB\|1\|AA, 4YBB\|1\|BA, 5AFI\|1\|a, 5IQR\|1\|2, 5J5B\|1\|AA, 5J5B\|1\|BA, 5J7L\|1\|AA, 5J7L\|1\|BA, 5J91\|1\|AA, 5J91\|1\|BA, 5MDV\|1\|2, 5NWY\|1\|0, 5WDT\|1\|a, 5WFS\|1\|a, 6H4N\|1\|a, 6I7V\|1\|AA, 6I7V\|1\|BA, 6ORE\|1\|2, 6TBV\|1\|16S1, 6TC3\|1\|16S1, 6WD0\|1\|3, 6WDE\|1\|3, 6XZA\|1\|A1, 6XZB\|1\|A1, 6Y69\|1\|a, 6YSS\|1\|a, 6ZTO\|1\|AA, 6ZTP\|1\|AA, 6ZU1\|1\|AA, 7AF3\|1\|1, 7AF5\|1\|1, 7AF8\|1\|1, 7AFA\|1\|1, 7B5K\|1\|a, 7BOD\|1\|A, 7BOE\|1\|A, 7BOF\|1\|A, 7BOG\|1\|A, 7BOH\|1\|A, 7BOI\|1\|A, 7K00\|1\|A, 7N1P\|1\|16, 7N2C\|1\|16, 7N2U\|1\|16, 7N2V\|1\|16, 7N30\|1\|16, 7N31\|1\|16, 7NAR\|1\|A, 7NAX\|1\|A, 7NSO\|1\|a, 7NWT\|1\|2, 7O19\|1\|AA, 7O1A\|1\|AA, 7O1C\|1\|AA, 7OE0\|1\|A, 7OI0\|1\|A, 7OIF\|1\|2, 7OII\|1\|2, 7OIZ\|1\|A, 7OT5\|1\|2, 7OTC\|1\|a, 7P3K\|1\|A, 7PJS\|1\|a, 7S1G\|1\|C, 7S1H\|1\|C, 7S1I\|1\|C, 7S1J\|1\|C, 7S1K\|1\|C, 7ST2\|1\|3, 7ST6\|1\|3	(1) 7UG7\|1\|16	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_3.0_56726.85	NR_3.0_56726.86	3.232	(97) 4U1U\|1\|AA, 4U1U\|1\|CA, 4U1V\|1\|AA, 4U1V\|1\|CA, 4U20\|1\|AA, 4U20\|1\|CA, 4U24\|1\|AA, 4U24\|1\|CA, 4U25\|1\|AA, 4U25\|1\|CA, 4U26\|1\|AA, 4U26\|1\|CA, 4U27\|1\|AA, 4U27\|1\|CA, 4V9D\|1\|AA, 4V9D\|1\|BA, 4V9O\|1\|BA, 4V9O\|1\|DA, 4V9O\|1\|FA, 4V9O\|1\|HA, 4V9P\|1\|BA, 4V9P\|1\|DA, 4V9P\|1\|FA, 4V9P\|1\|HA, 4WOI\|1\|AA, 4WOI\|1\|DA, 4YBB\|1\|AA, 4YBB\|1\|BA, 5AFI\|1\|a, 5IQR\|1\|2, 5J5B\|1\|AA, 5J5B\|1\|BA, 5J7L\|1\|AA, 5J7L\|1\|BA, 5J91\|1\|AA, 5J91\|1\|BA, 5MDV\|1\|2, 5NWY\|1\|0, 5WDT\|1\|a, 5WFS\|1\|a, 6H4N\|1\|a, 6I7V\|1\|AA, 6I7V\|1\|BA, 6ORE\|1\|2, 6TBV\|1\|16S1, 6TC3\|1\|16S1, 6WD0\|1\|3, 6WDE\|1\|3, 6XZA\|1\|A1, 6XZB\|1\|A1, 6Y69\|1\|a, 6YSS\|1\|a, 6ZTO\|1\|AA, 6ZTP\|1\|AA, 6ZU1\|1\|AA, 7AF3\|1\|1, 7AF5\|1\|1, 7AF8\|1\|1, 7AFA\|1\|1, 7B5K\|1\|a, 7BOD\|1\|A, 7BOE\|1\|A, 7BOF\|1\|A, 7BOG\|1\|A, 7BOH\|1\|A, 7BOI\|1\|A, 7K00\|1\|A, 7N1P\|1\|16, 7N2C\|1\|16, 7N2U\|1\|16, 7N2V\|1\|16, 7N30\|1\|16, 7N31\|1\|16, 7NAR\|1\|A, 7NAX\|1\|A, 7NSO\|1\|a, 7NWT\|1\|2, 7O19\|1\|AA, 7O1A\|1\|AA, 7O1C\|1\|AA, 7OE0\|1\|A, 7OI0\|1\|A, 7OIF\|1\|2, 7OII\|1\|2, 7OIZ\|1\|A, 7OT5\|1\|2, 7OTC\|1\|a, 7P3K\|1\|A, 7PJS\|1\|a, 7S1G\|1\|C, 7S1H\|1\|C, 7S1I\|1\|C, 7S1J\|1\|C, 7S1K\|1\|C, 7ST2\|1\|3, 7ST6\|1\|3, 7UG7\|1\|16	(0)	(1) 7TOS\|1\|16S

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	#NTs
1	4V9P\|1\|FA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
2	4V9P\|1\|HA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
3	4V9O\|1\|HA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
4	5J7L\|1\|AA	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-RAY DIFFRACTION	3	1534
5	5J5B\|1\|AA	Structure of the WT E coli ribosome bound to tetracycline	X-RAY DIFFRACTION	2.8	1534
6	5J91\|1\|AA	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-RAY DIFFRACTION	2.96	1534
7	6I7V\|1\|AA	Ribosomal protein paralogs bL31 and bL36	X-RAY DIFFRACTION	2.9	1533
8	4YBB\|1\|AA	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	1534
9	4U24\|1\|AA	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-RAY DIFFRACTION	2.9	1538
10	4U26\|1\|AA	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-RAY DIFFRACTION	2.8	1538
11	4U25\|1\|AA	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-RAY DIFFRACTION	2.9	1538
12	4U27\|1\|AA	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-RAY DIFFRACTION	2.8	1538
13	4U1V\|1\|AA	Crystal structure of the E. coli ribosome bound to linopristin.	X-RAY DIFFRACTION	3	1538
14	4U20\|1\|AA	Crystal structure of the E. coli ribosome bound to flopristin.	X-RAY DIFFRACTION	2.9	1538
15	4U1U\|1\|AA	Crystal structure of the E. coli ribosome bound to quinupristin.	X-RAY DIFFRACTION	2.95	1538
16	4V9P\|1\|BA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
17	4V9P\|1\|DA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
18	4V9O\|1\|DA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
19	4V9O\|1\|BA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
20	4V9O\|1\|FA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
21	5J7L\|1\|BA	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-RAY DIFFRACTION	3	1533
22	5J91\|1\|BA	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-RAY DIFFRACTION	2.96	1533
23	5J5B\|1\|BA	Structure of the WT E coli ribosome bound to tetracycline	X-RAY DIFFRACTION	2.8	1533
24	4YBB\|1\|BA	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	1533
25	6I7V\|1\|BA	Ribosomal protein paralogs bL31 and bL36	X-RAY DIFFRACTION	2.9	1533
26	4U24\|1\|CA	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-RAY DIFFRACTION	2.9	1539
27	4U26\|1\|CA	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-RAY DIFFRACTION	2.8	1539
28	4U25\|1\|CA	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-RAY DIFFRACTION	2.9	1539
29	4U27\|1\|CA	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-RAY DIFFRACTION	2.8	1539
30	4U1V\|1\|CA	Crystal structure of the E. coli ribosome bound to linopristin.	X-RAY DIFFRACTION	3	1539
31	4U20\|1\|CA	Crystal structure of the E. coli ribosome bound to flopristin.	X-RAY DIFFRACTION	2.9	1539
32	4U1U\|1\|CA	Crystal structure of the E. coli ribosome bound to quinupristin.	X-RAY DIFFRACTION	2.95	1539
33	4V9D\|1\|AA	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-RAY DIFFRACTION	3	1538
34	7N30\|1\|16	Elongating 70S ribosome complex in a hybrid-H2* pre-translocation (PRE-H2*) conformation	ELECTRON MICROSCOPY	2.66	1526
35	7N2U\|1\|16	Elongating 70S ribosome complex in a hybrid-H1 pre-translocation (PRE-H1) conformation	ELECTRON MICROSCOPY	2.53	1534
36	7N2V\|1\|16	Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)	ELECTRON MICROSCOPY	2.54	1534
37	7O1C\|1\|AA	Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome-RF2 complex stalled in response to L-tryptophan	ELECTRON MICROSCOPY	2.6	1534
38	7O19\|1\|AA	Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophan	ELECTRON MICROSCOPY	2.9	1534
39	7O1A\|1\|AA	Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan	ELECTRON MICROSCOPY	2.4	1534
40	6TC3\|1\|16S1	Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)	ELECTRON MICROSCOPY	2.7	1534
41	6TBV\|1\|16S1	Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)	ELECTRON MICROSCOPY	2.7	1534
42	7N31\|1\|16	Elongating 70S ribosome complex in a post-translocation (POST) conformation	ELECTRON MICROSCOPY	2.69	1533
43	7NSO\|1\|a	Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with P-tRNA	ELECTRON MICROSCOPY	2.9	1540
44	5NWY\|1\|0	2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex	ELECTRON MICROSCOPY	2.9	1539
45	5MDV\|1\|2	Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)	ELECTRON MICROSCOPY	2.97	1534
46	6ORE\|1\|2	Release complex 70S	ELECTRON MICROSCOPY	2.9	1534
47	7OIF\|1\|2	CspA-27 cotranslational folding intermediate 2	ELECTRON MICROSCOPY	3	1534
48	7OII\|1\|2	CspA-70 cotranslational folding intermediate 2	ELECTRON MICROSCOPY	3	1534
49	7OT5\|1\|2	CspA-70 cotranslational folding intermediate 1	ELECTRON MICROSCOPY	2.9	1534
50	7NWT\|1\|2	Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)	ELECTRON MICROSCOPY	2.66	1534
51	7S1I\|1\|C	Wild-type Escherichia coli stalled ribosome with antibiotic radezolid	ELECTRON MICROSCOPY	2.48	1540
52	7S1G\|1\|C	wild-type Escherichia coli stalled ribosome with antibiotic linezolid	ELECTRON MICROSCOPY	2.48	1540
53	7S1H\|1\|C	Wild-type Escherichia coli ribosome with antibiotic linezolid	ELECTRON MICROSCOPY	2.35	1540
54	7S1K\|1\|C	Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid	ELECTRON MICROSCOPY	2.42	1540
55	7S1J\|1\|C	Wild-type Escherichia coli ribosome with antibiotic radezolid	ELECTRON MICROSCOPY	2.47	1540
56	6Y69\|1\|a	Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX	ELECTRON MICROSCOPY	2.86	1539
57	6H4N\|1\|a	Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome	ELECTRON MICROSCOPY	3	1534
58	7ST2\|1\|3	Post translocation, non-rotated 70S ribosome with EF-G dissociated (Structure VII)	ELECTRON MICROSCOPY	2.9	1539
59	6WD0\|1\|3	Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-A)	ELECTRON MICROSCOPY	3	1539
60	7ST6\|1\|3	Pre translocation, non-rotated 70S ribosome (Structure I)	ELECTRON MICROSCOPY	3	1539
61	7OIZ\|1\|A	Cryo-EM structure of 70S ribosome stalled with TnaC peptide	ELECTRON MICROSCOPY	2.9	1519
62	7P3K\|1\|A	Cryo-EM structure of 70S ribosome stalled with TnaC peptide (control)	ELECTRON MICROSCOPY	2.9	1519
63	7B5K\|1\|a	E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.	ELECTRON MICROSCOPY	2.9	1533
64	4WOI\|1\|AA	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-RAY DIFFRACTION	3	1538
65	4WOI\|1\|DA	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-RAY DIFFRACTION	3	1539
66	7K00\|1\|A	Structure of the Bacterial Ribosome at 2 Angstrom Resolution	ELECTRON MICROSCOPY	1.98	1519
67	6ZU1\|1\|AA	E. coli 70S-RNAP expressome complex in uncoupled state 2	ELECTRON MICROSCOPY	3	1533
68	6ZTP\|1\|AA	E. coli 70S-RNAP expressome complex in uncoupled state 6	ELECTRON MICROSCOPY	3	1533
69	6ZTO\|1\|AA	E. coli 70S-RNAP expressome complex in uncoupled state 1	ELECTRON MICROSCOPY	3	1533
70	7N1P\|1\|16	Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation	ELECTRON MICROSCOPY	2.33	1542
71	6WDE\|1\|3	Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-B)	ELECTRON MICROSCOPY	3	1539
72	5AFI\|1\|a	2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM	ELECTRON MICROSCOPY	2.9	1539
73	5WDT\|1\|a	70S ribosome-EF-Tu H84A complex with GppNHp	ELECTRON MICROSCOPY	3	1540
74	5WFS\|1\|a	70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)	ELECTRON MICROSCOPY	3	1540
75	6XZB\|1\|A1	E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).	ELECTRON MICROSCOPY	2.54	1523
76	6XZA\|1\|A1	E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).	ELECTRON MICROSCOPY	2.66	1523
77	4V9D\|1\|BA	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-RAY DIFFRACTION	3	1539
78	5IQR\|1\|2	Structure of RelA bound to the 70S ribosome	ELECTRON MICROSCOPY	3	1533
79	6YSS\|1\|a	Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis state	ELECTRON MICROSCOPY	2.6	1540
80	7PJS\|1\|a	Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)	ELECTRON MICROSCOPY	2.35	662
81	7UG7\|1\|16	70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B	ELECTRON MICROSCOPY	2.58	1514
82	7OTC\|1\|a	Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B	ELECTRON MICROSCOPY	2.9	1533
83	7N2C\|1\|16	Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)	ELECTRON MICROSCOPY	2.72	1534
84	7BOI\|1\|A	Bacterial 30S ribosomal subunit assembly complex state F (multibody refinement for body domain of 30S ribosome)	ELECTRON MICROSCOPY	2.98	1078
85	7NAR\|1\|A	Complete Bacterial 30S ribosomal subunit assembly complex state F (+RsgA)(Consensus Refinement)	ELECTRON MICROSCOPY	3	1534
86	7BOD\|1\|A	Bacterial 30S ribosomal subunit assembly complex state M (body domain)	ELECTRON MICROSCOPY	2.88	1078
87	7BOE\|1\|A	Bacterial 30S ribosomal subunit assembly complex state M (Consensus refinement)	ELECTRON MICROSCOPY	2.9	1534
88	7BOG\|1\|A	Bacterial 30S ribosomal subunit assembly complex state E (body domain)	ELECTRON MICROSCOPY	2.75	1071
89	7BOH\|1\|A	Complete Bacterial 30S ribosomal subunit assembly complex state E (+RbfA)(Consensus Refinement)	ELECTRON MICROSCOPY	2.82	1527
90	7OI0\|1\|A	E.coli delta rbfA pre-30S ribosomal subunit class D	ELECTRON MICROSCOPY	2.76	963
91	7OE0\|1\|A	E. coli pre-30S delta rbfA ribosomal subunit class F	ELECTRON MICROSCOPY	2.69	1510
92	7BOF\|1\|A	Bacterial 30S ribosomal subunit assembly complex state I (body domain)	ELECTRON MICROSCOPY	2.92	1070
93	7NAX\|1\|A	Complete Bacterial 30S ribosomal subunit assembly complex state I (Consensus Refinement)	ELECTRON MICROSCOPY	2.96	1526
94	7AF3\|1\|1	Bacterial 30S ribosomal subunit assembly complex state M (head domain)	ELECTRON MICROSCOPY	2.82	456
95	7AF8\|1\|1	Bacterial 30S ribosomal subunit assembly complex state E (head domain)	ELECTRON MICROSCOPY	2.75	456
96	7AF5\|1\|1	Bacterial 30S ribosomal subunit assembly complex state I (head domain)	ELECTRON MICROSCOPY	2.96	456
97	7AFA\|1\|1	Bacterial 30S ribosomal subunit assembly complex state F (head domain)	ELECTRON MICROSCOPY	2.95	456

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_3.0_56726.85 Obsolete

Release history

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