BGSU RNA Site //

Equivalence class NR_3.0_64918.1 Obsolete

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
16O6X|1|D (rep)Cyclic RNA cA4synthetic constructSyntheticCrystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallizationX-ray diffraction2.112019-07-31
24BA2|1|R5'-R(*AP*AP*AP*AP)-3'Saccharolobus solfataricusArchaeaArchaeal exosome (Rrp4-Rrp41(D182A)-Rrp42) bound to inorganic phosphateX-ray diffraction2.52012-10-03
36O6X|1|CCyclic RNA cA4synthetic constructSyntheticCrystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallizationX-ray diffraction2.112019-07-31
46O7B|1|CCyclic RNA cA4synthetic constructSyntheticCrystal structure of Csm1-Csm4 cassette in complex with cA4X-ray diffraction2.42019-07-31
56O6V|1|CCyclic RNA cA4synthetic constructSyntheticCrystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6X-ray diffraction2.352019-07-31
66OV0|1|ERNA (5'-R(*AP*AP*AP*(A23))-3')synthetic constructSyntheticCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-ray diffraction2.82019-07-31
76OV0|1|HRNA (5'-R(*AP*AP*AP*(A23))-3')synthetic constructSyntheticCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-ray diffraction2.82019-07-31
86OV0|1|GRNA (5'-R(*AP*AP*AP*(A23))-3')synthetic constructSyntheticCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-ray diffraction2.82019-07-31
96O6V|1|DCyclic RNA cA4synthetic constructSyntheticCrystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6X-ray diffraction2.352019-07-31
106OV0|1|FRNA (5'-R(*AP*AP*AP*(A23))-3')synthetic constructSyntheticCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-ray diffraction2.82019-07-31
116O7B|1|DCyclic RNA cA4synthetic constructSyntheticCrystal structure of Csm1-Csm4 cassette in complex with cA4X-ray diffraction2.42019-07-31
126O7H|1|KCyclic DNA cA4synthetic constructSyntheticCryo-EM structure of Csm-crRNA-target RNA ternary complex in complex with cA4 in type III-A CRISPR-Cas systemElectron microscopy2.92019-07-31

Release history

Release3.853.863.873.883.893.903.913.923.93
Date2019-08-022019-08-092019-08-162019-08-232019-08-282019-09-042019-09-112019-09-192019-09-25

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.0_64918.1NR_3.0_94845.13.85(1) 4BA2|1|R(11) 6O6V|1|C, 6O6V|1|D, 6O6X|1|C, 6O6X|1|D, 6O7B|1|C, 6O7B|1|D, 6O7H|1|K, 6OV0|1|E, 6OV0|1|F, 6OV0|1|G, 6OV0|1|H(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.0_64918.1NR_3.0_64918.23.94(12) 6O7H|1|K, 6O7B|1|D, 6O7B|1|C, 6O6X|1|D, 6O6X|1|C, 6OV0|1|H, 6O6V|1|D, 6OV0|1|G, 6O6V|1|C, 6OV0|1|F, 4BA2|1|R, 6OV0|1|E(0) (2) 6R9R|1|D, 6R9R|1|E

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16O7B|1|CCrystal structure of Csm1-Csm4 cassette in complex with cA4X-RAY DIFFRACTION2.44
26OV0|1|ECrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-RAY DIFFRACTION2.83
36OV0|1|HCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-RAY DIFFRACTION2.83
46O6V|1|DCrystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6X-RAY DIFFRACTION2.354
56O6X|1|CCrystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallizationX-RAY DIFFRACTION2.114
66O6X|1|DCrystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallizationX-RAY DIFFRACTION2.114
76O6V|1|CCrystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6X-RAY DIFFRACTION2.354
86O7B|1|DCrystal structure of Csm1-Csm4 cassette in complex with cA4X-RAY DIFFRACTION2.44
96O7H|1|KCryo-EM structure of Csm-crRNA-target RNA ternary complex in complex with cA4 in type III-A CRISPR-Cas systemELECTRON MICROSCOPY2.94
104BA2|1|RArchaeal exosome (Rrp4-Rrp41(D182A)-Rrp42) bound to inorganic phosphateX-RAY DIFFRACTION2.54
116OV0|1|FCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-RAY DIFFRACTION2.82
126OV0|1|GCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-RAY DIFFRACTION2.82