Equivalence class NR_3.0_64918.4 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6SCE|1|B (rep) | cyclic oligoadenylate | synthetic construct | Structure of a Type III CRISPR defence DNA nuclease activated by cyclic oligoadenylate | X-ray diffraction | 1.83 | 2020-02-19 | |||
| 2 | 6SCF|1|I | cyclic oligoadenylate | synthetic construct | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-ray diffraction | 1.55 | 2019-10-30 | |||
| 3 | 6SCF|1|K | cyclic oligoadenylate | synthetic construct | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-ray diffraction | 1.55 | 2019-10-30 | |||
| 4 | 6SCF|1|M | cyclic oligoadenylate | synthetic construct | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-ray diffraction | 1.55 | 2019-10-30 | |||
| 5 | 6SCF|1|L | cyclic oligoadenylate | synthetic construct | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-ray diffraction | 1.55 | 2019-10-30 | |||
| 6 | 6O6X|1|D | Cyclic RNA cA4 | synthetic construct | Crystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallization | X-ray diffraction | 2.11 | 2019-07-31 | |||
| 7 | 4BA2|1|R | 5'-R(*AP*AP*AP*AP)-3' | Saccharolobus solfataricus | Archaeal exosome (Rrp4-Rrp41(D182A)-Rrp42) bound to inorganic phosphate | X-ray diffraction | 2.5 | 2012-10-03 | |||
| 8 | 6O6X|1|C | Cyclic RNA cA4 | synthetic construct | Crystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallization | X-ray diffraction | 2.11 | 2019-07-31 | |||
| 9 | 6O7B|1|C | Cyclic RNA cA4 | synthetic construct | Crystal structure of Csm1-Csm4 cassette in complex with cA4 | X-ray diffraction | 2.4 | 2019-07-31 | |||
| 10 | 6O6V|1|C | Cyclic RNA cA4 | synthetic construct | Crystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6 | X-ray diffraction | 2.35 | 2019-07-31 | |||
| 11 | 6R9R|1|D | DNA (5'-R(P*AP*AP*AP*A)-3') | synthetic construct | Crystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2 | X-ray diffraction | 2.7 | 2019-10-02 | |||
| 12 | 6OV0|1|E | RNA (5'-R(*AP*AP*AP*(A23))-3') | synthetic construct | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-ray diffraction | 2.8 | 2019-07-31 | |||
| 13 | 6OV0|1|H | RNA (5'-R(*AP*AP*AP*(A23))-3') | synthetic construct | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-ray diffraction | 2.8 | 2019-07-31 | |||
| 14 | 6OV0|1|G | RNA (5'-R(*AP*AP*AP*(A23))-3') | synthetic construct | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-ray diffraction | 2.8 | 2019-07-31 | |||
| 15 | 6O6V|1|D | Cyclic RNA cA4 | synthetic construct | Crystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6 | X-ray diffraction | 2.35 | 2019-07-31 | |||
| 16 | 6OV0|1|F | RNA (5'-R(*AP*AP*AP*(A23))-3') | synthetic construct | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-ray diffraction | 2.8 | 2019-07-31 | |||
| 17 | 6O7B|1|D | Cyclic RNA cA4 | synthetic construct | Crystal structure of Csm1-Csm4 cassette in complex with cA4 | X-ray diffraction | 2.4 | 2019-07-31 | |||
| 18 | 6R9R|1|E | DNA (5'-R(P*AP*AP*AP*A)-3') | synthetic construct | Crystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2 | X-ray diffraction | 2.7 | 2019-10-02 | |||
| 19 | 6O7H|1|K | Cyclic DNA cA4 | synthetic construct | Cryo-EM structure of Csm-crRNA-target RNA ternary complex in complex with cA4 in type III-A CRISPR-Cas system | Electron microscopy | 2.9 | 2019-07-31 |
Release history
| Release | 3.114 | 3.115 | 3.116 | 3.117 | 3.118 | 3.119 | 3.120 | 3.121 | 3.122 | 3.123 | 3.124 | 3.125 | 3.126 | 3.127 | 3.128 | 3.129 | 3.130 | 3.131 | 3.132 | 3.133 | 3.134 | 3.135 | 3.136 | 3.137 | 3.138 | 3.139 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-02-19 | 2020-02-26 | 2020-03-04 | 2020-03-11 | 2020-03-18 | 2020-03-25 | 2020-04-01 | 2020-04-08 | 2020-04-15 | 2020-04-22 | 2020-04-29 | 2020-05-06 | 2020-05-13 | 2020-05-20 | 2020-05-27 | 2020-06-03 | 2020-06-10 | 2020-06-17 | 2020-06-24 | 2020-07-01 | 2020-07-08 | 2020-07-15 | 2020-07-22 | 2020-07-29 | 2020-08-05 | 2020-08-12 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.0_64918.4 | NR_3.0_64918.3 | 3.114 | (18) 6O6V|1|D, 6O6V|1|C, 4BA2|1|R, 6SCF|1|M, 6SCF|1|L, 6SCF|1|K, 6SCF|1|I, 6R9R|1|E, 6R9R|1|D, 6OV0|1|H, 6OV0|1|G, 6OV0|1|F, 6OV0|1|E, 6O7H|1|K, 6O7B|1|D, 6O7B|1|C, 6O6X|1|D, 6O6X|1|C | (1) 6SCE|1|B | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.0_64918.4 | NR_3.0_64918.5 | 3.140 | (19) 6SCF|1|K, 4BA2|1|R, 6O6X|1|C, 6O7B|1|D, 6OV0|1|F, 6R9R|1|E, 6R9R|1|D, 6SCF|1|I, 6SCF|1|M, 6O6V|1|D, 6O7B|1|C, 6OV0|1|E, 6OV0|1|H, 6SCE|1|B, 6SCF|1|L, 6O6V|1|C, 6O6X|1|D, 6O7H|1|K, 6OV0|1|G | (0) | (5) 6YUD|1|M, 6YUD|1|O, 6YUD|1|P, 6YUD|1|Q, 6YUD|1|K |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6O6X|1|C | Crystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallization | X-RAY DIFFRACTION | 2.11 | 4 |
| 2 | 6O6V|1|D | Crystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6 | X-RAY DIFFRACTION | 2.35 | 4 |
| 3 | 6SCF|1|L | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-RAY DIFFRACTION | 1.55 | 4 |
| 4 | 6SCF|1|K | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-RAY DIFFRACTION | 1.55 | 4 |
| 5 | 6SCF|1|M | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-RAY DIFFRACTION | 1.55 | 4 |
| 6 | 6O7H|1|K | Cryo-EM structure of Csm-crRNA-target RNA ternary complex in complex with cA4 in type III-A CRISPR-Cas system | ELECTRON MICROSCOPY | 2.9 | 4 |
| 7 | 6O7B|1|D | Crystal structure of Csm1-Csm4 cassette in complex with cA4 | X-RAY DIFFRACTION | 2.4 | 4 |
| 8 | 6R9R|1|D | Crystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2 | X-RAY DIFFRACTION | 2.7 | 4 |
| 9 | 6O6X|1|D | Crystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallization | X-RAY DIFFRACTION | 2.11 | 4 |
| 10 | 6O6V|1|C | Crystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6 | X-RAY DIFFRACTION | 2.35 | 4 |
| 11 | 6SCE|1|B | Structure of a Type III CRISPR defence DNA nuclease activated by cyclic oligoadenylate | X-RAY DIFFRACTION | 1.83 | 4 |
| 12 | 6SCF|1|I | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-RAY DIFFRACTION | 1.55 | 4 |
| 13 | 6OV0|1|H | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-RAY DIFFRACTION | 2.8 | 3 |
| 14 | 6OV0|1|E | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-RAY DIFFRACTION | 2.8 | 3 |
| 15 | 6O7B|1|C | Crystal structure of Csm1-Csm4 cassette in complex with cA4 | X-RAY DIFFRACTION | 2.4 | 4 |
| 16 | 4BA2|1|R | Archaeal exosome (Rrp4-Rrp41(D182A)-Rrp42) bound to inorganic phosphate | X-RAY DIFFRACTION | 2.5 | 4 |
| 17 | 6OV0|1|F | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-RAY DIFFRACTION | 2.8 | 2 |
| 18 | 6R9R|1|E | Crystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2 | X-RAY DIFFRACTION | 2.7 | 2 |
| 19 | 6OV0|1|G | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-RAY DIFFRACTION | 2.8 | 2 |