#IFECompound(s)RNA source organismTitleMethodResolutionDate
11FJG|1|A (rep)16S RIBOSOMAL RNAThermus thermophilusSTRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTICS STREPTOMYCIN, SPECTINOMYCIN, AND PAROMOMYCINX-RAY DIFFRACTION32000-09-25
22UUA|1|A16S RRNAThermus thermophilusStructure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUC-codon in the A-site and paromomycin.X-RAY DIFFRACTION2.92007-05-15
31N32|1|A16S RIBOSOMAL RNAThermus thermophilusStructure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position at the a site with paromomycinX-RAY DIFFRACTION32002-11-29
44B3M|1|A16S RIBOSOMAL RNAThermus thermophilusCrystal structure of the 30S ribosome in complex with compound 1X-RAY DIFFRACTION2.92013-08-07
52UUB|1|A16S RRNAThermus thermophilusStructure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUU-codon in the A-site and paromomycin.X-RAY DIFFRACTION2.82007-05-15
62VQE|1|A16S RRNAThermus thermophilusModified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decodingX-RAY DIFFRACTION2.52008-04-29
74W2I|1|AA16S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.72014-10-15
84B3R|1|A16S RIBOSOMAL RNAThermus thermophilusCrystal structure of the 30S ribosome in complex with compound 30X-RAY DIFFRACTION32013-08-07
94W2I|1|CA16S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.72014-10-15
104V9H|1|AA16S ribosomal RNAThermus thermophilusCrystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase stateX-RAY DIFFRACTION2.862014-07-09
112VQF|1|A16S RRNAThermus thermophilusModified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decodingX-RAY DIFFRACTION2.92008-04-29
124B3T|1|A16S RIBOSOMAL RNAThermus thermophilusCrystal structure of the 30S ribosome in complex with compound 39X-RAY DIFFRACTION32013-08-07
131VY4|1|AA16S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.62014-08-20
144W2G|1|AA16S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.552014-10-15
154W2F|1|AA16S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.42014-10-15
163T1Y|1|A16S rRNAThermus thermophilusStructure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA Lysine 3 (TRNALYS3) bound to an mRNA with an AAG-codon in the A-site and paromomycinX-RAY DIFFRACTION2.82012-01-25
172UXC|1|A16S RIBOSOMAL RNAThermus thermophilusCrystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA UCGU in the context of the Thermus thermophilus 30S subunit.X-RAY DIFFRACTION2.92007-05-08
181VY5|1|AA16S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.552014-08-20
194W2E|1|a16S Ribosomal RNAThermus thermophilusCrystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.92014-10-01
204W2F|1|CA16S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.42014-10-15
211VY5|1|CA16S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.552014-08-20
224W2G|1|CA16S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.552014-10-15
231XMQ|1|A16s ribosomal RNAThermus thermophilusCrystal Structure of t6A37-ASLLysUUU AAA-mRNA Bound to the Decoding CenterX-RAY DIFFRACTION32004-12-14
244V8I|1|AA16S Ribosomal RNAThermus thermophilusCrystal structure of YfiA bound to the 70S ribosome.X-RAY DIFFRACTION2.72014-07-09
254LNT|1|QA16S rRNAThermus thermophilusCrystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION2.942014-08-06
264V67|1|AA16S RRNAThermus thermophilusCrystal structure of a translation termination complex formed with release factor RF2.X-RAY DIFFRACTION32014-07-09
274W2H|1|CA16S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-RAY DIFFRACTION2.72014-10-15
284W2H|1|AA16S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-RAY DIFFRACTION2.72014-10-15
294V8D|1|CA16S ribosomal RNAThermus thermophilusStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-RAY DIFFRACTION32014-07-09
304V67|1|CA16S RRNAThermus thermophilusCrystal structure of a translation termination complex formed with release factor RF2.X-RAY DIFFRACTION32014-07-09
314V8I|1|CA16S Ribosomal RNAThermus thermophilusCrystal structure of YfiA bound to the 70S ribosome.X-RAY DIFFRACTION2.72014-07-09
324LNT|1|XA16S rRNAThermus thermophilusCrystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION2.942014-08-06
334V9R|1|CA16S Ribosomal RNAThermus thermophilusCrystal structure of antibiotic DITYROMYCIN bound to 70S ribosomeX-RAY DIFFRACTION32014-07-09
341VY4|1|CA16S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.62014-08-20
351VY6|1|AA16S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.92014-08-20
364V8B|1|CA16S ribosomal RNAThermus thermophilusCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-RAY DIFFRACTION32014-07-09
371VY7|1|AA16S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.82014-08-20
384V8D|1|AA16S ribosomal RNAThermus thermophilusStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-RAY DIFFRACTION32014-07-09
394V9R|1|AA16S Ribosomal RNAThermus thermophilusCrystal structure of antibiotic DITYROMYCIN bound to 70S ribosomeX-RAY DIFFRACTION32014-07-09
401VY6|1|CA16S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.92014-08-20
411VY7|1|CA16S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.82014-08-20
424V8B|1|AA16S ribosomal RNAThermus thermophilusCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-RAY DIFFRACTION32014-07-09
434V90|1|AA16S RIBOSOMAL RNAThermus thermophilusThermus thermophilus RibosomeX-RAY DIFFRACTION2.952014-07-09
444V51|1|CA16S ribosomal RNAThermus thermophilusStructure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-RAY DIFFRACTION2.82014-07-09
454V51|1|AA16S ribosomal RNAThermus thermophilusStructure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-RAY DIFFRACTION2.82014-07-09
464V8G|1|CA16S Ribosomal RNAThermus thermophilusCrystal structure of RMF bound to the 70S ribosome.X-RAY DIFFRACTION32014-07-09
474V7W|1|AA16S rRNAThermus thermophilusStructure of the Thermus thermophilus ribosome complexed with chloramphenicol.X-RAY DIFFRACTION32014-07-09
484V7W|1|CA16S rRNAThermus thermophilusStructure of the Thermus thermophilus ribosome complexed with chloramphenicol.X-RAY DIFFRACTION32014-07-09
494V7X|1|AA16S rRNAThermus thermophilusStructure of the Thermus thermophilus ribosome complexed with erythromycin.X-RAY DIFFRACTION32014-07-09
504V7X|1|CA16S rRNAThermus thermophilusStructure of the Thermus thermophilus ribosome complexed with erythromycin.X-RAY DIFFRACTION32014-07-09
514V7Y|1|CA16S rRNAThermus thermophilusStructure of the Thermus thermophilus 70S ribosome complexed with azithromycin.X-RAY DIFFRACTION32014-07-09
524V7Y|1|AA16S rRNAThermus thermophilusStructure of the Thermus thermophilus 70S ribosome complexed with azithromycin.X-RAY DIFFRACTION32014-07-09
534V8G|1|AA16S Ribosomal RNAThermus thermophilusCrystal structure of RMF bound to the 70S ribosome.X-RAY DIFFRACTION32014-07-09
544V7L|1|CA16S ribosomal RNAThermus thermophilusThe structures of viomycin bound to the 70S ribosome.X-RAY DIFFRACTION32014-07-09
554V7L|1|AA16S ribosomal RNAThermus thermophilusThe structures of viomycin bound to the 70S ribosome.X-RAY DIFFRACTION32014-07-09

Release history

Release2.02.12.22.32.42.52.6
Date2014-12-052014-12-122014-12-192014-12-262015-01-022015-01-092015-01-16

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14V8G|1|AACrystal structure of RMF bound to the 70S ribosome.X-RAY DIFFRACTION31505
24V90|1|AAThermus thermophilus RibosomeX-RAY DIFFRACTION2.951507
34V9H|1|AACrystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase stateX-RAY DIFFRACTION2.861514
44W2E|1|aCrystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.91496
54V67|1|AACrystal structure of a translation termination complex formed with release factor RF2.X-RAY DIFFRACTION31504
64V67|1|CACrystal structure of a translation termination complex formed with release factor RF2.X-RAY DIFFRACTION31504
74V7W|1|AAStructure of the Thermus thermophilus ribosome complexed with chloramphenicol.X-RAY DIFFRACTION31504
84V7X|1|AAStructure of the Thermus thermophilus ribosome complexed with erythromycin.X-RAY DIFFRACTION31504
94V7Y|1|AAStructure of the Thermus thermophilus 70S ribosome complexed with azithromycin.X-RAY DIFFRACTION31504
104V7X|1|CAStructure of the Thermus thermophilus ribosome complexed with erythromycin.X-RAY DIFFRACTION31504
114V7Y|1|CAStructure of the Thermus thermophilus 70S ribosome complexed with azithromycin.X-RAY DIFFRACTION31504
124V7W|1|CAStructure of the Thermus thermophilus ribosome complexed with chloramphenicol.X-RAY DIFFRACTION31504
134V8G|1|CACrystal structure of RMF bound to the 70S ribosome.X-RAY DIFFRACTION31501
144V8I|1|CACrystal structure of YfiA bound to the 70S ribosome.X-RAY DIFFRACTION2.71491
154V9R|1|CACrystal structure of antibiotic DITYROMYCIN bound to 70S ribosomeX-RAY DIFFRACTION31503
161VY7|1|CACrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.81503
174W2H|1|CACrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-RAY DIFFRACTION2.71503
181VY6|1|CACrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.91503
191VY4|1|CACrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.61503
201VY5|1|CACrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.551503
214W2F|1|CACrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.41503
224W2G|1|CACrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.551503
234W2I|1|CACrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.71503
244W2I|1|AACrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.71496
251VY7|1|AACrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.81498
264W2H|1|AACrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-RAY DIFFRACTION2.71497
274W2F|1|AACrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.41497
284W2G|1|AACrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.551498
291VY5|1|AACrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.551498
301VY4|1|AACrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.61497
311VY6|1|AACrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.91498
324V9R|1|AACrystal structure of antibiotic DITYROMYCIN bound to 70S ribosomeX-RAY DIFFRACTION31498
334V8I|1|AACrystal structure of YfiA bound to the 70S ribosome.X-RAY DIFFRACTION2.71493
344V8D|1|AAStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-RAY DIFFRACTION31502
354V8B|1|AACrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-RAY DIFFRACTION31506
364LNT|1|XACrystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION2.941500
374LNT|1|QACrystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION2.941500
384V8B|1|CACrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-RAY DIFFRACTION31506
394V8D|1|CAStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-RAY DIFFRACTION31502
404V7L|1|CAThe structures of viomycin bound to the 70S ribosome.X-RAY DIFFRACTION31495
414V7L|1|AAThe structures of viomycin bound to the 70S ribosome.X-RAY DIFFRACTION31495
424V51|1|AAStructure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-RAY DIFFRACTION2.81504
434V51|1|CAStructure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-RAY DIFFRACTION2.81504
443T1Y|1|AStructure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA Lysine 3 (TRNALYS3) bound to an mRNA with an AAG-codon in the A-site and paromomycinX-RAY DIFFRACTION2.81513
451FJG|1|ASTRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTICS STREPTOMYCIN, SPECTINOMYCIN, AND PAROMOMYCINX-RAY DIFFRACTION31507
464B3R|1|ACrystal structure of the 30S ribosome in complex with compound 30X-RAY DIFFRACTION31512
474B3M|1|ACrystal structure of the 30S ribosome in complex with compound 1X-RAY DIFFRACTION2.91512
484B3T|1|ACrystal structure of the 30S ribosome in complex with compound 39X-RAY DIFFRACTION31512
492UUB|1|AStructure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUU-codon in the A-site and paromomycin.X-RAY DIFFRACTION2.81512
502UUA|1|AStructure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUC-codon in the A-site and paromomycin.X-RAY DIFFRACTION2.91512
512VQF|1|AModified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decodingX-RAY DIFFRACTION2.91513
522VQE|1|AModified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decodingX-RAY DIFFRACTION2.51513
531N32|1|AStructure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position at the a site with paromomycinX-RAY DIFFRACTION31513
542UXC|1|ACrystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA UCGU in the context of the Thermus thermophilus 30S subunit.X-RAY DIFFRACTION2.91513
551XMQ|1|ACrystal Structure of t6A37-ASLLysUUU AAA-mRNA Bound to the Decoding CenterX-RAY DIFFRACTION31507