Equivalence class NR_3.0_69813.10 Current
| # | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
|---|---|---|---|---|---|---|---|
| 1 | 6OF1|1|1w (rep) | A-site and E-site tRNAs, mRNA | Escherichia coli | Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution | X-RAY DIFFRACTION | 2.8 | 2019-04-17 |
| 2 | 5IBB|1|1K | tRNAVal, mRNA | Escherichia coli | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site | X-RAY DIFFRACTION | 2.96 | 2016-05-25 |
| 3 | 6CAE|1|1y | A-site and E-site tRNAs | Escherichia coli | Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 2018-04-18 |
| 4 | 6O97|1|1w | A-site and E-site tRNAs, mRNA | Escherichia coli | Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution | X-RAY DIFFRACTION | 2.75 | 2019-04-17 |
| 5 | 6OF1|1|1y | A-site and E-site tRNAs | Escherichia coli | Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution | X-RAY DIFFRACTION | 2.8 | 2019-04-17 |
| 6 | 6OF1|1|2w | A-site and E-site tRNAs, mRNA | Escherichia coli | Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution | X-RAY DIFFRACTION | 2.8 | 2019-04-17 |
| 7 | 6ND6|1|1y | A-site and E-site tRNAs | Escherichia coli | Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution | X-RAY DIFFRACTION | 2.85 | 2019-02-20 |
| 8 | 6O97|1|1y | A-site and E-site tRNAs | Escherichia coli | Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution | X-RAY DIFFRACTION | 2.75 | 2019-04-17 |
| 9 | 5IBB|1|3L | tRNAVal | Escherichia coli | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site | X-RAY DIFFRACTION | 2.96 | 2016-05-25 |
| 10 | 6CAE|1|1w | A-site and E-site tRNAs, mRNA | Escherichia coli | Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 2018-04-18 |
| 11 | 6OF1|1|2y | A-site and E-site tRNAs | Escherichia coli | Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution | X-RAY DIFFRACTION | 2.8 | 2019-04-17 |
| 12 | 6CAE|1|2y | A-site and E-site tRNAs | Escherichia coli | Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 2018-04-18 |
| 13 | 6ND6|1|1w | A-site and E-site tRNAs, mRNA | Escherichia coli | Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution | X-RAY DIFFRACTION | 2.85 | 2019-02-20 |
| 14 | 6CAE|1|2w | A-site and E-site tRNAs, mRNA | Escherichia coli | Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 2018-04-18 |
| 15 | 6O97|1|2y | A-site and E-site tRNAs | Escherichia coli | Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution | X-RAY DIFFRACTION | 2.75 | 2019-04-17 |
| 16 | 5IBB|1|3K | tRNAVal | Escherichia coli | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site | X-RAY DIFFRACTION | 2.96 | 2016-05-25 |
| 17 | 6ND6|1|2y | A-site and E-site tRNAs | Escherichia coli | Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution | X-RAY DIFFRACTION | 2.85 | 2019-02-20 |
| 18 | 6O97|1|2w | A-site and E-site tRNAs, mRNA | Escherichia coli | Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution | X-RAY DIFFRACTION | 2.75 | 2019-04-17 |
| 19 | 6ND6|1|2w | A-site and E-site tRNAs, mRNA | Escherichia coli | Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution | X-RAY DIFFRACTION | 2.85 | 2019-02-20 |
| 20 | 7EQJ|1|A | RNA (76-MER) | Escherichia coli | crystal structure of E. coli Valine tRNA | X-RAY DIFFRACTION | 2.043 | 2022-01-19 |
| 21 | 7K00|1|Y | A-site tRNA-val, mRNA | Escherichia coli | Structure of the Bacterial Ribosome at 2 Angstrom Resolution | ELECTRON MICROSCOPY | 1.98 | 2020-09-23 |
| 22 | 7EQJ|1|B | RNA (76-MER) | Escherichia coli | crystal structure of E. coli Valine tRNA | X-RAY DIFFRACTION | 2.043 | 2022-01-19 |
| 23 | 7B5K|1|9 | E-site val tRNA (76-MER) | Escherichia coli K-12 | E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain. | ELECTRON MICROSCOPY | 2.9 | 2021-05-26 |
Release history
| Release | 3.214 | 3.215 | 3.216 | 3.217 | 3.218 | 3.219 | 3.220 | 3.221 | 3.222 | 3.223 | 3.224 | 3.225 | 3.226 | 3.227 | 3.228 | 3.229 | 3.230 | 3.231 | 3.232 | 3.233 | 3.234 | 3.235 | 3.236 | 3.237 | 3.238 | 3.239 | 3.240 | 3.241 | 3.242 | 3.243 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-01-19 | 2022-01-26 | 2022-02-02 | 2022-02-09 | 2022-02-16 | 2022-02-23 | 2022-03-02 | 2022-03-09 | 2022-03-16 | 2022-03-23 | 2022-03-30 | 2022-04-06 | 2022-04-13 | 2022-04-20 | 2022-04-27 | 2022-05-04 | 2022-05-11 | 2022-05-18 | 2022-05-25 | 2022-06-01 | 2022-06-08 | 2022-06-15 | 2022-06-22 | 2022-06-29 | 2022-07-06 | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 | 2022-08-10 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.0_69813.10 | NR_3.0_69813.9 | 3.214 | (21) 6CAE|1|2w, 7K00|1|Y, 6CAE|1|1y, 7B5K|1|9, 6CAE|1|1w, 6OF1|1|2y, 5IBB|1|3L, 6OF1|1|2w, 5IBB|1|3K, 6OF1|1|1y, 5IBB|1|1K, 6OF1|1|1w, 6O97|1|2y, 6O97|1|2w, 6O97|1|1y, 6O97|1|1w, 6ND6|1|2y, 6ND6|1|2w, 6ND6|1|1y, 6ND6|1|1w, 6CAE|1|2y | (2) 7EQJ|1|A, 7EQJ|1|B | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5IBB|1|1K | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site | X-RAY DIFFRACTION | 2.96 | 67 |
| 2 | 7K00|1|Y | Structure of the Bacterial Ribosome at 2 Angstrom Resolution | ELECTRON MICROSCOPY | 1.98 | 74 |
| 3 | 6ND6|1|2w | Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution | X-RAY DIFFRACTION | 2.85 | 67 |
| 4 | 6O97|1|2w | Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution | X-RAY DIFFRACTION | 2.75 | 67 |
| 5 | 6OF1|1|2w | Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution | X-RAY DIFFRACTION | 2.8 | 67 |
| 6 | 6CAE|1|2w | Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 67 |
| 7 | 6CAE|1|1w | Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 67 |
| 8 | 6ND6|1|1w | Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution | X-RAY DIFFRACTION | 2.85 | 67 |
| 9 | 6O97|1|1w | Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution | X-RAY DIFFRACTION | 2.75 | 67 |
| 10 | 6OF1|1|1w | Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution | X-RAY DIFFRACTION | 2.8 | 67 |
| 11 | 7EQJ|1|A | crystal structure of E. coli Valine tRNA | X-RAY DIFFRACTION | 2.043 | 76 |
| 12 | 7EQJ|1|B | crystal structure of E. coli Valine tRNA | X-RAY DIFFRACTION | 2.043 | 75 |
| 13 | 6ND6|1|1y | Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution | X-RAY DIFFRACTION | 2.85 | 68 |
| 14 | 6OF1|1|1y | Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution | X-RAY DIFFRACTION | 2.8 | 67 |
| 15 | 6CAE|1|1y | Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 68 |
| 16 | 6O97|1|1y | Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution | X-RAY DIFFRACTION | 2.75 | 67 |
| 17 | 6O97|1|2y | Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution | X-RAY DIFFRACTION | 2.75 | 67 |
| 18 | 6OF1|1|2y | Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution | X-RAY DIFFRACTION | 2.8 | 67 |
| 19 | 6CAE|1|2y | Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 67 |
| 20 | 6ND6|1|2y | Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution | X-RAY DIFFRACTION | 2.85 | 67 |
| 21 | 5IBB|1|3L | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site | X-RAY DIFFRACTION | 2.96 | 71 |
| 22 | 5IBB|1|3K | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site | X-RAY DIFFRACTION | 2.96 | 70 |
| 23 | 7B5K|1|9 | E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain. | ELECTRON MICROSCOPY | 2.9 | 76 |