Equivalence class NR_3.0_73564.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6CY4|1|E+ 6CY4|1|F (rep) | RNA (5'-R(*(CBV)P*GP*AP*AP*(UOB)P*UP*CP*G)-3') | synthetic construct | RNA octamer containing 2'-OMe, 4'- Cbeta-OMe U. | X-ray diffraction | 1.85 | 2018-08-29 | |||
| 2 | 6CY4|1|G+ 6CY4|1|H | RNA (5'-R(*(CBV)P*GP*AP*AP*(UOB)P*UP*CP*G)-3') | synthetic construct | RNA octamer containing 2'-OMe, 4'- Cbeta-OMe U. | X-ray diffraction | 1.85 | 2018-08-29 | |||
| 3 | 6CY0|1|A+ 6CY0|1|B | RNA (5'-R(*(CBV)P*GP*AP*AP*(UFB)P*UP*CP*G)-3') | synthetic construct | RNA octamer containing 2'-F, 4'-Cbeta-OMe U. | X-ray diffraction | 2.4 | 2018-08-29 | |||
| 4 | 6CY0|1|C+ 6CY0|1|D | RNA (5'-R(*(CBV)P*GP*AP*AP*(UFB)P*UP*CP*G)-3') | synthetic construct | RNA octamer containing 2'-F, 4'-Cbeta-OMe U. | X-ray diffraction | 2.4 | 2018-08-29 | |||
| 5 | 6CY0|1|E+ 6CY0|1|F | RNA (5'-R(*(CBV)P*GP*AP*AP*(UFB)P*UP*CP*G)-3') | synthetic construct | RNA octamer containing 2'-F, 4'-Cbeta-OMe U. | X-ray diffraction | 2.4 | 2018-08-29 | |||
| 6 | 6CY0|1|G+ 6CY0|1|H | RNA (5'-R(*(CBV)P*GP*AP*AP*(UFB)P*UP*CP*G)-3') | synthetic construct | RNA octamer containing 2'-F, 4'-Cbeta-OMe U. | X-ray diffraction | 2.4 | 2018-08-29 |
Release history
| Release | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-08-31 | 2018-09-07 | 2018-09-14 | 2018-09-21 | 2018-09-28 | 2018-10-05 | 2018-10-12 | 2018-10-19 | 2018-10-26 | 2018-11-02 | 2018-11-09 | 2018-11-16 | 2018-11-23 | 2018-11-30 | 2018-12-07 | 2018-12-14 | 2018-12-21 | 2018-12-28 | 2019-01-04 | 2019-01-11 | 2019-01-18 | 2019-01-25 | 2019-02-01 | 2019-02-08 | 2019-02-15 | 2019-02-22 | 2019-03-01 | 2019-03-08 | 2019-03-15 | 2019-03-22 | 2019-03-29 | 2019-04-05 | 2019-04-12 | 2019-04-19 | 2019-04-26 | 2019-05-03 | 2019-05-10 | 2019-05-17 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.0_73564.1 | NR_3.0_87665.1 | 3.75 | (6) 6CY4|1|G+6CY4|1|H, 6CY0|1|A+6CY0|1|B, 6CY0|1|E+6CY0|1|F, 6CY4|1|E+6CY4|1|F, 6CY0|1|G+6CY0|1|H, 6CY0|1|C+6CY0|1|D | (0) | (9) 6CY4|1|A+6CY4|1|B, 5VR4|1|C+5VR4|1|D, 5DER|1|C+5DER|1|D, 5D8T|1|A+5D8T|1|B, 6CY2|1|A+6CY2|1|B, 5VR4|1|A+5VR4|1|B, 5DER|1|A+5DER|1|B, 6CY4|1|C+6CY4|1|D, 6CXZ|1|A+6CXZ|1|B |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6CY0|1|A+6CY0|1|B | RNA octamer containing 2'-F, 4'-Cbeta-OMe U. | X-RAY DIFFRACTION | 2.4 | 6 |
| 2 | 6CY0|1|G+6CY0|1|H | RNA octamer containing 2'-F, 4'-Cbeta-OMe U. | X-RAY DIFFRACTION | 2.4 | 6 |
| 3 | 6CY0|1|E+6CY0|1|F | RNA octamer containing 2'-F, 4'-Cbeta-OMe U. | X-RAY DIFFRACTION | 2.4 | 6 |
| 4 | 6CY0|1|C+6CY0|1|D | RNA octamer containing 2'-F, 4'-Cbeta-OMe U. | X-RAY DIFFRACTION | 2.4 | 6 |
| 5 | 6CY4|1|E+6CY4|1|F | RNA octamer containing 2'-OMe, 4'- Cbeta-OMe U. | X-RAY DIFFRACTION | 1.85 | 6 |
| 6 | 6CY4|1|G+6CY4|1|H | RNA octamer containing 2'-OMe, 4'- Cbeta-OMe U. | X-RAY DIFFRACTION | 1.85 | 6 |