#IFECompound(s)RNA source organismTitleMethodResolutionDate
13PEY|1|B (rep)RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3')S. cerevisiae Dbp5 bound to RNA and ADP BeF3X-RAY DIFFRACTION1.42011-03-23
23PEW|1|BRNA (5'-R(P*UP*UP*UP*UP*UP*U)-3')S. cerevisiae Dbp5 L327V bound to RNA and ADP BeF3X-RAY DIFFRACTION1.52011-03-23
35ELX|1|BRNA (5'-R(P*UP*UP*UP*UP*UP*U)-3')Saccharomyces cerevisiaeS. cerevisiae Dbp5 bound to RNA and mant-ADP BeF3X-RAY DIFFRACTION1.812016-02-24
44ALP|1|EHEXA URIDINEsynthetic constructThe Lin28b Cold shock domain in complex with hexauridineX-RAY DIFFRACTION1.482012-09-05
52HYI|1|F5'-R(*UP*UP*UP*UP*UP*U)-3'Structure of the human exon junction complex with a trapped DEAD-box helicase bound to RNAX-RAY DIFFRACTION2.32006-08-15
66G2K|1|RRNA (5'-R(P*UP*UP*UP*UP*UP*U)-3')synthetic constructStructure of HuR RRM3 in complex with RNA (UUUUUU)X-RAY DIFFRACTION2.012018-10-31
72HYI|1|L5'-R(*UP*UP*UP*UP*UP*U)-3'Structure of the human exon junction complex with a trapped DEAD-box helicase bound to RNAX-RAY DIFFRACTION2.32006-08-15
83EX7|1|JRNA (5'-R(*UP*UP*UP*UP*UP*U)-3')The crystal structure of EJC in its transition stateX-RAY DIFFRACTION2.32008-12-09
95SZE|1|CRNA (5'-R(P*UP*UP*U)-3')unidentifiedCrystal structure of Aquifex aeolicus Hfq-RNA complex at 1.5AX-RAY DIFFRACTION1.52017-04-12
103EX7|1|FRNA (5'-R(*UP*UP*UP*UP*UP*U)-3')The crystal structure of EJC in its transition stateX-RAY DIFFRACTION2.32008-12-09
113O8C|1|CRNA (5'-R(P*UP*(5BU)P*UP*UP*UP*U)-3')Visualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCVX-RAY DIFFRACTION22011-01-05
125BTE|1|DRNA (5'-R(P*UP*(U37)P*(U37)P*UP*UP*U)-3')Homo sapiensCrystal structure of Ashbya gossypii Rai1 in complex with pU(S)6-Mn2+X-RAY DIFFRACTION2.42015-07-22
133PF5|1|Rhexaribouracil (rU6)Crystal structure of Bs-CspB in complex with rU6X-RAY DIFFRACTION1.682011-09-21
145BTE|1|CRNA (5'-R(P*UP*(U37)P*(U37)P*UP*UP*U)-3')Homo sapiensCrystal structure of Ashbya gossypii Rai1 in complex with pU(S)6-Mn2+X-RAY DIFFRACTION2.42015-07-22
156WRE|1|DRNA (5'-R(*UP*(U37)P*(U37)P*UP)-3')Homo sapiensCrystal structure of mouse DXO in complex with 5'-OH RNA substrate mimic and calcium ionX-RAY DIFFRACTION22020-05-13
166I0U|1|BRNA (5'-R(*UP*UP*UP*U)-3')Drosophila melanogasterCrystal structure of DmTailor in complex with U6 RNAX-RAY DIFFRACTION22018-12-05
175ZSA|1|CRNA (5'-R(P*UP*UP*UP*U)-3')synthetic constructCrystal structure of monkey TLR7 in complex with IMDQ and UUUUUUX-RAY DIFFRACTION2.52019-01-30
185ZSA|1|DRNA (5'-R(P*UP*UP*UP*U)-3')synthetic constructCrystal structure of monkey TLR7 in complex with IMDQ and UUUUUUX-RAY DIFFRACTION2.52019-01-30
193O8R|1|CRNA (5'-R(P*UP*(5BU)P*UP*UP*UP*U)-3')Visualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCVX-RAY DIFFRACTION2.32011-01-05
204Y91|1|ORNA (5'-R(P*UP*UP*UP*UP*UP*U)-3')synthetic constructCrystal Structure of a Thermotoga maritima Hfq homologX-RAY DIFFRACTION2.662016-03-16
214Y91|1|NRNA (5'-R(P*UP*UP*UP*UP*UP*U)-3')synthetic constructCrystal Structure of a Thermotoga maritima Hfq homologX-RAY DIFFRACTION2.662016-03-16
223PF5|1|Shexaribouracil (rU6)Crystal structure of Bs-CspB in complex with rU6X-RAY DIFFRACTION1.682011-09-21
236PPN|1|AMimic of unprocessed U6 snRNAsynthetic constructStructure of S. pombe Lsm2-8 with unprocessed U6 snRNAX-RAY DIFFRACTION1.912020-06-17
246PPN|1|IMimic of unprocessed U6 snRNAsynthetic constructStructure of S. pombe Lsm2-8 with unprocessed U6 snRNAX-RAY DIFFRACTION1.912020-06-17
256M7D|1|BRNA (5'-R(P*UP*UP*UP*UP*UP*U)-3')Structure of ncleoprotein of sendai virusELECTRON MICROSCOPY2.92021-03-24

Release history

Release3.1813.1823.183
Date2021-06-022021-06-092021-06-16

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14ALP|1|EThe Lin28b Cold shock domain in complex with hexauridineX-RAY DIFFRACTION1.486
25ZSA|1|CCrystal structure of monkey TLR7 in complex with IMDQ and UUUUUUX-RAY DIFFRACTION2.54
35ZSA|1|DCrystal structure of monkey TLR7 in complex with IMDQ and UUUUUUX-RAY DIFFRACTION2.54
44Y91|1|NCrystal Structure of a Thermotoga maritima Hfq homologX-RAY DIFFRACTION2.666
54Y91|1|OCrystal Structure of a Thermotoga maritima Hfq homologX-RAY DIFFRACTION2.666
66PPN|1|IStructure of S. pombe Lsm2-8 with unprocessed U6 snRNAX-RAY DIFFRACTION1.915
76PPN|1|AStructure of S. pombe Lsm2-8 with unprocessed U6 snRNAX-RAY DIFFRACTION1.915
83PF5|1|RCrystal structure of Bs-CspB in complex with rU6X-RAY DIFFRACTION1.689
96M7D|1|BStructure of ncleoprotein of sendai virusELECTRON MICROSCOPY2.96
103EX7|1|JThe crystal structure of EJC in its transition stateX-RAY DIFFRACTION2.36
112HYI|1|FStructure of the human exon junction complex with a trapped DEAD-box helicase bound to RNAX-RAY DIFFRACTION2.36
122HYI|1|LStructure of the human exon junction complex with a trapped DEAD-box helicase bound to RNAX-RAY DIFFRACTION2.36
133EX7|1|FThe crystal structure of EJC in its transition stateX-RAY DIFFRACTION2.36
143PEY|1|BS. cerevisiae Dbp5 bound to RNA and ADP BeF3X-RAY DIFFRACTION1.46
155ELX|1|BS. cerevisiae Dbp5 bound to RNA and mant-ADP BeF3X-RAY DIFFRACTION1.816
163PEW|1|BS. cerevisiae Dbp5 L327V bound to RNA and ADP BeF3X-RAY DIFFRACTION1.56
175BTE|1|DCrystal structure of Ashbya gossypii Rai1 in complex with pU(S)6-Mn2+X-RAY DIFFRACTION2.44
185BTE|1|CCrystal structure of Ashbya gossypii Rai1 in complex with pU(S)6-Mn2+X-RAY DIFFRACTION2.44
193PF5|1|SCrystal structure of Bs-CspB in complex with rU6X-RAY DIFFRACTION1.681
203O8C|1|CVisualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCVX-RAY DIFFRACTION25
213O8R|1|CVisualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCVX-RAY DIFFRACTION2.35
226I0U|1|BCrystal structure of DmTailor in complex with U6 RNAX-RAY DIFFRACTION24
236G2K|1|RStructure of HuR RRM3 in complex with RNA (UUUUUU)X-RAY DIFFRACTION2.016
246WRE|1|DCrystal structure of mouse DXO in complex with 5'-OH RNA substrate mimic and calcium ionX-RAY DIFFRACTION23
255SZE|1|CCrystal structure of Aquifex aeolicus Hfq-RNA complex at 1.5AX-RAY DIFFRACTION1.53