Equivalence class NR_3.0_80276.3 Current
| # | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
|---|---|---|---|---|---|---|---|
| 1 | 6E1S|1|A (rep) | RNA (33-MER) | Caldanaerobacter subterraneus | Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 1: 2-[(dibenzo[b,d]furan-2-yl)oxy]ethan-1-amine | X-RAY DIFFRACTION | 1.8 | 2019-04-10 |
| 2 | 6E1T|1|A | RNA (33-MER) | Caldanaerobacter subterraneus | Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 1: 2-[(dibenzo[b,d]furan-2-yl)oxy]ethan-1-amine | X-RAY DIFFRACTION | 1.8 | 2019-04-10 |
| 3 | 6E1W|1|A | RNA (33-MER) | Caldanaerobacter subterraneus | Crystal structure of a class I PreQ1 riboswitch complexed with PreQ1 | X-RAY DIFFRACTION | 1.69 | 2019-04-10 |
| 4 | 6E1U|1|A | RNA (33-MER) | Caldanaerobacter subterraneus | Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 2: 2-[(dibenzo[b,d]furan-2-yl)oxy]-N,N-dimethylethan-1-amine | X-RAY DIFFRACTION | 1.94 | 2019-04-10 |
| 5 | 7E9E|1|A | 33-mer RNA | Caldanaerobacter subterraneus subsp. tengcongensis | Crystal structure of a class I PreQ1 riboswitch aptamer (ab13-14) complexed with a cognate ligand-derived photoaffinity probe | X-RAY DIFFRACTION | 1.57 | 2021-11-17 |
| 6 | 6VUH|1|A | PREQ1 RIBOSWITCH | Caldanaerobacter subterraneus | APO PreQ1 riboswitch aptamer grown in Mn2+ | X-RAY DIFFRACTION | 2 | 2020-06-24 |
| 7 | 6VUI|1|A | PREQ1 RIBOSWITCH | Caldanaerobacter subterraneus | Metabolite-bound PreQ1 riboswitch with Mn2+ | X-RAY DIFFRACTION | 2.68 | 2020-06-24 |
| 8 | 7E9I|1|A | 33-mer RNA | Caldanaerobacter subterraneus subsp. tengcongensis | Crystal structure of a class I PreQ1 riboswitch aptamer (wild-type) complexed with a cognate ligand-derived photoaffinity probe | X-RAY DIFFRACTION | 2.8 | 2021-11-17 |
| 9 | 6E1V|1|A | RNA (33-MER) | Caldanaerobacter subterraneus | Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 3: 2-[(9H-carbazol-3-yl)oxy]-N,N-dimethylethan-1-amine | X-RAY DIFFRACTION | 2.56 | 2019-04-10 |
| 10 | 3Q50|1|A | PREQ1 RIBOSWITCH | Structural analysis of a class I PreQ1 riboswitch aptamer in the metabolite-bound state | X-RAY DIFFRACTION | 2.75 | 2011-05-18 | |
| 11 | 3Q51|1|A | PREQ1 RIBOSWITCH | Structural analysis of a class I PreQ1 riboswitch aptamer in the metabolite-free state. | X-RAY DIFFRACTION | 2.85 | 2011-05-18 | |
| 12 | 3GCA|1|A | PreQ1 riboswitch | The structural basis for recognition of the preQ0 metabolite by an unusually small riboswitch aptamer domain | X-RAY DIFFRACTION | 2.75 | 2009-03-03 |
Release history
| Release | 3.205 | 3.206 | 3.207 | 3.208 | 3.209 | 3.210 | 3.211 | 3.212 | 3.213 | 3.214 | 3.215 | 3.216 | 3.217 | 3.218 | 3.219 | 3.220 | 3.221 | 3.222 | 3.223 | 3.224 | 3.225 | 3.226 | 3.227 | 3.228 | 3.229 | 3.230 | 3.231 | 3.232 | 3.233 | 3.234 | 3.235 | 3.236 | 3.237 | 3.238 | 3.239 | 3.240 | 3.241 | 3.242 | 3.243 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2021-11-17 | 2021-11-24 | 2021-12-01 | 2021-12-08 | 2021-12-15 | 2021-12-22 | 2021-12-29 | 2022-01-05 | 2022-01-12 | 2022-01-19 | 2022-01-26 | 2022-02-02 | 2022-02-09 | 2022-02-16 | 2022-02-23 | 2022-03-02 | 2022-03-09 | 2022-03-16 | 2022-03-23 | 2022-03-30 | 2022-04-06 | 2022-04-13 | 2022-04-20 | 2022-04-27 | 2022-05-04 | 2022-05-11 | 2022-05-18 | 2022-05-25 | 2022-06-01 | 2022-06-08 | 2022-06-15 | 2022-06-22 | 2022-06-29 | 2022-07-06 | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 | 2022-08-10 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6VUI|1|A | Metabolite-bound PreQ1 riboswitch with Mn2+ | X-RAY DIFFRACTION | 2.68 | 33 |
| 2 | 6E1U|1|A | Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 2: 2-[(dibenzo[b,d]furan-2-yl)oxy]-N,N-dimethylethan-1-amine | X-RAY DIFFRACTION | 1.94 | 31 |
| 3 | 6E1S|1|A | Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 1: 2-[(dibenzo[b,d]furan-2-yl)oxy]ethan-1-amine | X-RAY DIFFRACTION | 1.8 | 31 |
| 4 | 6E1T|1|A | Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 1: 2-[(dibenzo[b,d]furan-2-yl)oxy]ethan-1-amine | X-RAY DIFFRACTION | 1.8 | 30 |
| 5 | 6VUH|1|A | APO PreQ1 riboswitch aptamer grown in Mn2+ | X-RAY DIFFRACTION | 2 | 33 |
| 6 | 3Q51|1|A | Structural analysis of a class I PreQ1 riboswitch aptamer in the metabolite-free state. | X-RAY DIFFRACTION | 2.85 | 32 |
| 7 | 6E1V|1|A | Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 3: 2-[(9H-carbazol-3-yl)oxy]-N,N-dimethylethan-1-amine | X-RAY DIFFRACTION | 2.56 | 30 |
| 8 | 3GCA|1|A | The structural basis for recognition of the preQ0 metabolite by an unusually small riboswitch aptamer domain | X-RAY DIFFRACTION | 2.75 | 33 |
| 9 | 3Q50|1|A | Structural analysis of a class I PreQ1 riboswitch aptamer in the metabolite-bound state | X-RAY DIFFRACTION | 2.75 | 33 |
| 10 | 7E9I|1|A | Crystal structure of a class I PreQ1 riboswitch aptamer (wild-type) complexed with a cognate ligand-derived photoaffinity probe | X-RAY DIFFRACTION | 2.8 | 33 |
| 11 | 6E1W|1|A | Crystal structure of a class I PreQ1 riboswitch complexed with PreQ1 | X-RAY DIFFRACTION | 1.69 | 31 |
| 12 | 7E9E|1|A | Crystal structure of a class I PreQ1 riboswitch aptamer (ab13-14) complexed with a cognate ligand-derived photoaffinity probe | X-RAY DIFFRACTION | 1.57 | 31 |