Equivalence class NR_3.0_80360.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6TFF|1|A (rep) | nadA RNA | Chains: A | Candidatus Koribacter versatilis | Bacteria | RF03013 | Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Nicotinamide adenine dinucleotide (NAD+) | X-ray diffraction | 2.52 | 2020-09-23 |
| 2 | 6TFG|1|A | nadA RNA | Chains: A | Candidatus Koribacter versatilis | Bacteria | RF03013 | Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Adenosine 3-phosphate 5-phosphosulfate (APPS) | X-ray diffraction | 2.45 | 2020-09-23 |
| 3 | 6TF1|1|A | nadA RNA | Chains: A | Candidatus Koribacter versatilis | Bacteria | RF03013 | Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Adenosine diphosphate (ADP) | X-ray diffraction | 2.4 | 2020-09-23 |
| 4 | 6TF3|1|A | nadA RNA | Chains: A | Candidatus Koribacter versatilis | Bacteria | RF03013 | Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Cordycepin 5-triphosphate (3-dATP) | X-ray diffraction | 2.66 | 2020-09-23 |
| 5 | 6TF2|1|A | nadA RNA | Chains: A | Candidatus Koribacter versatilis | Bacteria | RF03013 | Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Adenosine 5-triphosphate (ATP) | X-ray diffraction | 2.55 | 2020-09-23 |
| 6 | 6TF0|1|A | nadA RNA | Chains: A | Candidatus Koribacter versatilis | Bacteria | RF03013 | Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Nicotinamide adenine dinucleotide, reduced (NADH) | X-ray diffraction | 2.1 | 2020-09-23 |
| 7 | 6TFH|1|A | nadA RNA | Chains: A | Candidatus Koribacter versatilis | Bacteria | RF03013 | Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Nicotinamide adenine dinucleotide, reduced (NADH); soaking with Manganese(II) (Mn2+) | X-ray diffraction | 2.95 | 2020-09-23 |
| 8 | 6TFE|1|A | nadA RNA | Chains: A | Candidatus Koribacter versatilis | Bacteria | RF03013 | Crystal structure of the ADP-binding domain of the NAD+ riboswitch with N6-Methyl-adenosine-5'-triphosphate (m6ATP) | X-ray diffraction | 2.3 | 2020-09-23 |
Release history
| Release | 3.145 |
|---|---|
| Date | 2020-09-23 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well.
| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6TF0|1|A | Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Nicotinamide adenine dinucleotide, reduced (NADH) | X-RAY DIFFRACTION | 2.1 | 51 |
| 2 | 6TFF|1|A | Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Nicotinamide adenine dinucleotide (NAD+) | X-RAY DIFFRACTION | 2.52 | 52 |
| 3 | 6TFE|1|A | Crystal structure of the ADP-binding domain of the NAD+ riboswitch with N6-Methyl-adenosine-5'-triphosphate (m6ATP) | X-RAY DIFFRACTION | 2.3 | 52 |
| 4 | 6TFG|1|A | Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Adenosine 3-phosphate 5-phosphosulfate (APPS) | X-RAY DIFFRACTION | 2.45 | 52 |
| 5 | 6TF2|1|A | Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Adenosine 5-triphosphate (ATP) | X-RAY DIFFRACTION | 2.55 | 52 |
| 6 | 6TF3|1|A | Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Cordycepin 5-triphosphate (3-dATP) | X-RAY DIFFRACTION | 2.66 | 52 |
| 7 | 6TF1|1|A | Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Adenosine diphosphate (ADP) | X-RAY DIFFRACTION | 2.4 | 52 |
| 8 | 6TFH|1|A | Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Nicotinamide adenine dinucleotide, reduced (NADH); soaking with Manganese(II) (Mn2+) | X-RAY DIFFRACTION | 2.95 | 51 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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