NR_3.0_82809.1

Members (10)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	3GX5\|1\|A (rep)		RNA (94-MER)				Crystal structure of T. tencongensis SAM-I riboswitch variant A94G/U34 bound with SAM	X-ray diffraction	2.4	2010-01-12
2	2GIS\|1\|A		SAM-I riboswitch				Structure of the S-adenosylmethionine riboswitch mRNA regulatory element	X-ray diffraction	2.9	2006-07-04
3	3GX6\|1\|A		RNA (94-MER)				Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G bound with SAM in manganese chloride	X-ray diffraction	2.8	2010-01-12
4	3IQR\|1\|A		SAM-I riboswitch				SAM-I riboswitch from T. tencongensis variant A94G bound with SAM	X-ray diffraction	2.55	2010-08-04
5	3IQP\|1\|A		SAM-I riboswitch				SAM-I riboswitch from T. tencongensis variant A94G apo form	X-ray diffraction	2.9	2010-08-04
6	3GX2\|1\|A		RNA (94-MER)				TteSAM-I riboswitch variant A94GU34C bound to sinefungin	X-ray diffraction	2.9	2010-01-12
7	3IQN\|1\|A		SAM-I riboswitch				Free-state structural transitions of the SAM-I riboswitch	X-ray diffraction	2.7	2010-08-04
8	2YDH\|1\|A	SAM riboswitch	SAM-I RIBOSWITCH	Caldanaerobacter subterraneus	Bacteria	RF00162	Crystal structure of the SAM-I riboswitch A94G U34 G18U G19U variant in complex with SAM	X-ray diffraction	2.9	2011-09-07
9	3GX7\|1\|A		RNA (94-MER)				Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G mutant A6C/U7G/A87C/U88G bound with SAM	X-ray diffraction	2.95	2010-01-12
10	3GX3\|1\|A		RNA (94-MER)				Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G bound with SAH	X-ray diffraction	2.7	2010-01-12

Release history

Release	2.0	2.1	2.2	2.3	2.4	2.5	2.6	2.7	2.8	2.9	2.10	2.11	2.12	2.13	2.14	2.15	2.16	2.17	2.18	2.19	2.20	2.21	2.22	2.23	2.24	2.25	2.26	2.27	2.28	2.29	2.30	2.31	2.32	2.33	2.34	2.35	2.36	2.37	2.38	2.39	2.40	2.41	2.42	2.43	2.44	2.45	2.46	2.47	2.48	2.49	2.50	2.51	2.52	2.53	2.54	2.55	2.56	2.57	2.58	2.59	2.60	2.61	2.62	2.63	2.64	2.65	2.66	2.67	2.68	2.69	2.70	2.71	2.72	2.73	2.74	2.75	2.76	2.77	2.78	2.79	2.80	2.81	2.82	2.83	2.84	2.85	2.86	2.87	2.88	2.89	2.90	2.91	2.92	2.93	2.94	2.95	2.96	2.97	2.98	2.99	2.100	2.101	2.102	2.103	2.104	2.105	2.106	2.107	2.108	2.109	2.110	2.111	2.112	2.113	2.114	2.115	2.116	2.117	2.118	2.119	2.120	2.121	2.122	2.123
Date	2014-12-05	2014-12-12	2014-12-19	2014-12-26	2015-01-02	2015-01-09	2015-01-16	2015-01-23	2015-01-30	2015-02-06	2015-02-13	2015-02-20	2015-02-27	2015-03-06	2015-03-13	2015-03-20	2015-03-27	2015-04-03	2015-04-10	2015-04-17	2015-04-24	2015-05-01	2015-05-08	2015-05-15	2015-05-22	2015-05-29	2015-06-05	2015-06-12	2015-06-19	2015-06-26	2015-07-03	2015-07-10	2015-07-17	2015-07-24	2015-07-31	2015-08-07	2015-08-14	2015-08-21	2015-08-28	2015-09-04	2015-09-11	2015-09-18	2015-09-25	2015-10-02	2015-10-09	2015-10-16	2015-10-23	2015-10-30	2015-11-06	2015-11-13	2015-11-20	2015-11-27	2015-12-04	2015-12-11	2015-12-18	2015-12-25	2016-01-01	2016-01-08	2016-01-15	2016-01-22	2016-01-29	2016-02-05	2016-02-12	2016-02-19	2016-02-26	2016-03-04	2016-03-11	2016-03-18	2016-03-25	2016-04-01	2016-04-08	2016-04-15	2016-04-22	2016-04-29	2016-05-06	2016-05-13	2016-05-20	2016-05-27	2016-06-03	2016-06-10	2016-06-17	2016-06-24	2016-07-01	2016-07-08	2016-07-15	2016-07-22	2016-07-29	2016-08-05	2016-08-12	2016-08-19	2016-08-26	2016-09-02	2016-09-09	2016-09-16	2016-09-23	2016-09-30	2016-10-07	2016-10-14	2016-10-21	2016-10-28	2016-11-04	2016-11-11	2016-11-18	2016-11-25	2016-12-02	2016-12-09	2016-12-16	2016-12-23	2016-12-30	2017-01-06	2017-01-13	2017-01-20	2017-01-27	2017-02-03	2017-02-10	2017-02-17	2017-02-24	2017-03-03	2017-03-10	2017-03-17	2017-03-24	2017-03-31	2017-04-11	2017-04-15

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_3.0_82809.1	NR_3.0_82809.2	2.124	(10) 3GX6\|1\|A, 3GX5\|1\|A, 3GX3\|1\|A, 3GX2\|1\|A, 2YDH\|1\|A, 2GIS\|1\|A, 3IQR\|1\|A, 3IQP\|1\|A, 3IQN\|1\|A, 3GX7\|1\|A	(0)	(1) 2YGH\|1\|A

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	3IQN\|1\|A	Free-state structural transitions of the SAM-I riboswitch	X-RAY DIFFRACTION	2.7	94
2	2GIS\|1\|A	Structure of the S-adenosylmethionine riboswitch mRNA regulatory element	X-RAY DIFFRACTION	2.9	94
3	3GX2\|1\|A	TteSAM-I riboswitch variant A94GU34C bound to sinefungin	X-RAY DIFFRACTION	2.9	94
4	3GX5\|1\|A	Crystal structure of T. tencongensis SAM-I riboswitch variant A94G/U34 bound with SAM	X-RAY DIFFRACTION	2.4	94
5	2YDH\|1\|A	Crystal structure of the SAM-I riboswitch A94G U34 G18U G19U variant in complex with SAM	X-RAY DIFFRACTION	2.9	94
6	3GX6\|1\|A	Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G bound with SAM in manganese chloride	X-RAY DIFFRACTION	2.8	94
7	3GX7\|1\|A	Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G mutant A6C/U7G/A87C/U88G bound with SAM	X-RAY DIFFRACTION	2.95	94
8	3GX3\|1\|A	Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G bound with SAH	X-RAY DIFFRACTION	2.7	94
9	3IQR\|1\|A	SAM-I riboswitch from T. tencongensis variant A94G bound with SAM	X-RAY DIFFRACTION	2.55	94
10	3IQP\|1\|A	SAM-I riboswitch from T. tencongensis variant A94G apo form	X-RAY DIFFRACTION	2.9	94

Coloring options: Nucleotide numbers

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