BGSU RNA Site //

Equivalence class NR_3.0_83491.1 Obsolete

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
14RKV|1|A (rep)RNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructSyntheticStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction0.882014-11-19
24RNE|1|ARNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructSyntheticStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction1.012014-11-19
34RNE|1|FRNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructSyntheticStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction1.012014-11-19
41J8G|1|A5'-R(*UP*GP*GP*GP*GP*U)-3'X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High ResolutionX-ray diffraction0.612001-11-23
54RJ1|1|ARNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructSyntheticStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction0.922014-11-12
64RNE|1|BRNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructSyntheticStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction1.012014-11-19
71J8G|1|C5'-R(*UP*GP*GP*GP*GP*U)-3'X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High ResolutionX-ray diffraction0.612001-11-23
84RNE|1|CRNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructSyntheticStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction1.012014-11-19
91J8G|1|D5'-R(*UP*GP*GP*GP*GP*U)-3'X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High ResolutionX-ray diffraction0.612001-11-23
104RNE|1|DRNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructSyntheticStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction1.012014-11-19
114RNE|1|ERNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructSyntheticStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction1.012014-11-19
124RNE|1|GRNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructSyntheticStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction1.012014-11-19
134RNE|1|HRNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructSyntheticStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction1.012014-11-19

Release history

Release2.02.12.22.32.42.52.62.72.82.9
Date2014-12-052014-12-122014-12-192014-12-262015-01-022015-01-092015-01-162015-01-232015-01-302015-02-06

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14RNE|1|GStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION1.016
21J8G|1|AX-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High ResolutionX-RAY DIFFRACTION0.616
34RNE|1|BStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION1.016
44RNE|1|DStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION1.016
54RKV|1|AStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION0.8810
64RNE|1|CStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION1.016
74RNE|1|AStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION1.019
84RNE|1|FStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION1.019
94RNE|1|EStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION1.016
104RNE|1|HStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION1.016
111J8G|1|CX-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High ResolutionX-RAY DIFFRACTION0.616
124RJ1|1|AStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION0.926
131J8G|1|DX-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High ResolutionX-RAY DIFFRACTION0.616