#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
15J7L|1|DA (rep)Large subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-RAY DIFFRACTION32016-07-27
24YBB|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541High-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.12015-03-18
34WOI|1|BALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF025414,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION32015-08-05
44WOI|1|CALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF025414,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION32015-08-05
56I7V|1|DALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Ribosomal protein paralogs bL31 and bL36X-RAY DIFFRACTION2.92018-12-05
65J91|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structure of the Wild-type 70S E coli ribosome bound to TigecyclineX-RAY DIFFRACTION2.962016-07-06
74V9P|1|EALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Control of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
84V9P|1|CALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Control of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
94V9P|1|GALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Control of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
104V9P|1|AALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Control of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
114V9D|1|CALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION32014-07-09
124V9O|1|AALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Control of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
134V9O|1|EALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Control of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
144V9O|1|CALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Control of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
155J7L|1|CALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-RAY DIFFRACTION32016-07-27
164U27|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.82014-07-30
174U24|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.92014-07-30
184U25|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.92014-07-30
194V9D|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION32014-07-09
204U26|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.82014-07-30
214V9O|1|GALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Control of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
224U1U|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.952014-07-30
234YBB|1|CALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541High-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.12015-03-18
244U1V|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION32014-07-30
254U20|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.92014-07-30
266I7V|1|CALarge subunit ribosomal RNA23S ribsomal RNAEscherichia coliBacteriaRF02541Ribosomal protein paralogs bL31 and bL36X-RAY DIFFRACTION2.92018-12-05
274U27|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.82014-07-30
284U25|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.92014-07-30
294U1U|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.952014-07-30
304U1V|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION32014-07-30
314U24|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.92014-07-30
324U26|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.82014-07-30
334U20|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.92014-07-30
345J91|1|CALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structure of the Wild-type 70S E coli ribosome bound to TigecyclineX-RAY DIFFRACTION2.962016-07-06
355J5B|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structure of the WT E coli ribosome bound to tetracyclineX-RAY DIFFRACTION2.82016-07-27
365J5B|1|CALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structure of the WT E coli ribosome bound to tetracyclineX-RAY DIFFRACTION2.82016-07-27
376HRM|1|1Small subunit ribosomal RNAstapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNAEscherichia coliBacteriaRF00177E. coli 70S d2d8 stapled ribosomeELECTRON MICROSCOPY2.962018-12-19
387K00|1|aLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structure of the Bacterial Ribosome at 2 Angstrom ResolutionELECTRON MICROSCOPY1.982020-09-23
397ZP8|1|bLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF0254170S E. coli ribosome with a stalled filamin domain 5 nascent chainELECTRON MICROSCOPY2.22022-08-10
406XZ7|1|ALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).ELECTRON MICROSCOPY2.12020-07-22
417LVK|1|ILarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Cfr-modified 50S subunit from Escherichia coliELECTRON MICROSCOPY2.22021-12-15
427Z20|1|bLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF0254170S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chainELECTRON MICROSCOPY2.292022-08-10
436PJ6|1|ILarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541High resolution cryo-EM structure of E.coli 50SELECTRON MICROSCOPY2.22020-01-22
447N1P|1|23Large subunit ribosomal RNA23S rRNAEscherichia coli K-12BacteriaRF02541Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformationELECTRON MICROSCOPY2.332021-07-14
457PJS|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)ELECTRON MICROSCOPY2.352021-10-20
467S1H|1|ILarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Wild-type Escherichia coli ribosome with antibiotic linezolidELECTRON MICROSCOPY2.352021-11-17
477S1K|1|ILarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolidELECTRON MICROSCOPY2.422022-01-19
487O1A|1|BALarge subunit ribosomal RNARibosomal RNA 23SEscherichia coli K-12BacteriaRF02541Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophanELECTRON MICROSCOPY2.42021-09-01
497S1J|1|ILarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Wild-type Escherichia coli ribosome with antibiotic radezolidELECTRON MICROSCOPY2.472022-03-02
507S1I|1|ILarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Wild-type Escherichia coli stalled ribosome with antibiotic radezolidELECTRON MICROSCOPY2.482022-03-02
517S1G|1|ILarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541wild-type Escherichia coli stalled ribosome with antibiotic linezolidELECTRON MICROSCOPY2.482021-11-17
527BL4|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coli K-12BacteriaRF02541in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particleELECTRON MICROSCOPY2.42021-05-12
537N2U|1|23Large subunit ribosomal RNA23S rRNAEscherichia coli K-12BacteriaRF02541Elongating 70S ribosome complex in a hybrid-H1 pre-translocation (PRE-H1) conformationELECTRON MICROSCOPY2.532021-07-14
547N2V|1|23Large subunit ribosomal RNA23S rRNAEscherichia coli K-12BacteriaRF02541Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)ELECTRON MICROSCOPY2.542021-07-14
557ZOD|1|bLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF0254170S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobiaELECTRON MICROSCOPY2.562022-08-10
567SA4|1|1Large subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Damaged 70S ribosome with PrfH boundELECTRON MICROSCOPY2.552022-08-03
576YS3|1|bLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptideELECTRON MICROSCOPY2.582020-09-30
587UG7|1|23Large subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF0254170S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin BELECTRON MICROSCOPY2.582022-05-18
596YSS|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis stateELECTRON MICROSCOPY2.62020-08-19
606PCR|1|ILarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541E. coli 50S ribosome bound to compound 40oELECTRON MICROSCOPY2.52020-06-17
616PC6|1|ILarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541E. coli 50S ribosome bound to compound 47ELECTRON MICROSCOPY2.52020-06-17
626PC7|1|ILarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541E. coli 50S ribosome bound to compound 46ELECTRON MICROSCOPY2.52020-06-17
637NWT|1|1Large subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)ELECTRON MICROSCOPY2.662021-12-15
647N30|1|23Large subunit ribosomal RNA23S rRNAEscherichia coli K-12BacteriaRF02541Elongating 70S ribosome complex in a hybrid-H2* pre-translocation (PRE-H2*) conformationELECTRON MICROSCOPY2.662021-07-14
656XZB|1|A2Large subunit ribosomal RNA23S rRNAEscherichia coli K-12BacteriaRF02541E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).ELECTRON MICROSCOPY2.542020-11-04
667ZQ5|1|bLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF0254170S E. coli ribosome with truncated uL23 and uL24 loopsELECTRON MICROSCOPY2.72022-08-10
677N31|1|23Large subunit ribosomal RNA23S rRNAEscherichia coli K-12BacteriaRF02541Elongating 70S ribosome complex in a post-translocation (POST) conformationELECTRON MICROSCOPY2.692021-07-14
687O1C|1|BALarge subunit ribosomal RNARibosomal RNA 23SEscherichia coli K-12BacteriaRF02541Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome-RF2 complex stalled in response to L-tryptophanELECTRON MICROSCOPY2.62021-09-01
696TBV|1|23S1Large subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)ELECTRON MICROSCOPY2.72020-01-01
706TC3|1|23S1Large subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)ELECTRON MICROSCOPY2.72020-01-01
717ZQ6|1|bLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF0254170S E. coli ribosome with truncated uL23 and uL24 loops and a stalled filamin domain 5 nascent chainELECTRON MICROSCOPY2.752022-08-10
726PCQ|1|ILarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541E. coli 50S ribosome bound to VM2ELECTRON MICROSCOPY2.62020-06-17
737N2C|1|23Large subunit ribosomal RNA23S rRNAEscherichia coli K-12BacteriaRF02541Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)ELECTRON MICROSCOPY2.722021-07-14
746XZA|1|A2Large subunit ribosomal RNA23S rRNAEscherichia coli K-12BacteriaRF02541E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).ELECTRON MICROSCOPY2.662020-11-04
756QDW|1|bLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptideELECTRON MICROSCOPY2.832020-01-15
766PC5|1|ILarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541E. coli 50S ribosome bound to compounds 46 and VS1ELECTRON MICROSCOPY2.72020-06-17
777NSO|1|ALarge subunit ribosomal RNA23S rRNA (2903-MER)Escherichia coliBacteriaRF02541Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with P-tRNAELECTRON MICROSCOPY2.92021-07-14
787ST2|1|1Large subunit ribosomal RNA23S rRNAEscherichia coli K-12BacteriaRF02541Post translocation, non-rotated 70S ribosome with EF-G dissociated (Structure VII)ELECTRON MICROSCOPY2.92022-02-23
797OT5|1|1Large subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541CspA-70 cotranslational folding intermediate 1ELECTRON MICROSCOPY2.92022-01-19
807OTC|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coli BL21(DE3)BacteriaRF02541Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin BELECTRON MICROSCOPY2.92022-05-11
815AFI|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF025412.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.92015-03-11
827B5K|1|ALarge subunit ribosomal RNA23S rRNAEscherichia coli K-12BacteriaRF02541E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.ELECTRON MICROSCOPY2.92021-05-26
836WYV|1|ILarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541E. coli 50S ribosome bound to compounds 47 and VS1ELECTRON MICROSCOPY2.752020-06-17
846PCT|1|ILarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541E. coli 50S ribosome bound to compound 41qELECTRON MICROSCOPY2.82020-06-17
856U48|1|CALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541E. coli 50S with phazolicin (PHZ) bound in exit tunnelELECTRON MICROSCOPY2.872019-09-18
866Y69|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinXELECTRON MICROSCOPY2.862020-07-01
876PCS|1|ILarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541E. coli 50S ribosome bound to compound 40eELECTRON MICROSCOPY2.82020-06-17
887O19|1|BALarge subunit ribosomal RNARibosomal RNA 23SEscherichia coli K-12BacteriaRF02541Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophanELECTRON MICROSCOPY2.92021-09-01
897ST6|1|1Large subunit ribosomal RNA23S rRNAEscherichia coli K-12BacteriaRF02541Pre translocation, non-rotated 70S ribosome (Structure I)ELECTRON MICROSCOPY32022-02-23
907TOS|1|23SLarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20ELECTRON MICROSCOPY2.92022-05-25
915NWY|1|NLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF025412.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complexELECTRON MICROSCOPY2.92017-07-19
926WD0|1|1Large subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-A)ELECTRON MICROSCOPY32020-07-01
937OII|1|1Large subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541CspA-70 cotranslational folding intermediate 2ELECTRON MICROSCOPY32022-01-19
947OIF|1|1Large subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541CspA-27 cotranslational folding intermediate 2ELECTRON MICROSCOPY32022-01-19
956WDE|1|1Large subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-B)ELECTRON MICROSCOPY32020-07-01
967OIZ|1|aLarge subunit ribosomal RNA23S rRNAEscherichia coli K-12BacteriaRF02541Cryo-EM structure of 70S ribosome stalled with TnaC peptideELECTRON MICROSCOPY2.92021-09-15
977P3K|1|aLarge subunit ribosomal RNA23S rRNAEscherichia coli K-12BacteriaRF02541Cryo-EM structure of 70S ribosome stalled with TnaC peptide (control)ELECTRON MICROSCOPY2.92021-10-27
986ORE|1|1Large subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Release complex 70SELECTRON MICROSCOPY2.92019-06-19
996PC8|1|ILarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541E. coli 50S ribosome bound to compound 40qELECTRON MICROSCOPY2.92020-06-17
1005MDV|1|1Large subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)ELECTRON MICROSCOPY2.972016-12-14
1016H4N|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli RibosomeELECTRON MICROSCOPY32018-09-05
1026ZU1|1|BALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541E. coli 70S-RNAP expressome complex in uncoupled state 2ELECTRON MICROSCOPY32020-09-16
1036ZTP|1|BALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541E. coli 70S-RNAP expressome complex in uncoupled state 6ELECTRON MICROSCOPY32020-09-16
1046ZTO|1|BALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541E. coli 70S-RNAP expressome complex in uncoupled state 1ELECTRON MICROSCOPY32020-09-23
1056PCH|1|ILarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541E. coli 50S ribosome bound to compound 21ELECTRON MICROSCOPY2.92020-06-17
1066QUL|1|ALarge subunit ribosomal RNA23S rRNA, P-site fMet-tRNA(fMet)Escherichia coliBacteriaRF02541Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolidELECTRON MICROSCOPY32019-04-10
1075WFS|1|ALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF0254170S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)ELECTRON MICROSCOPY32018-05-02
1085WDT|1|ALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF0254170S ribosome-EF-Tu H84A complex with GppNHpELECTRON MICROSCOPY32018-04-25
1095IQR|1|1Large subunit ribosomal RNALSU rRNAEscherichia coliBacteriaRF02541Structure of RelA bound to the 70S ribosomeELECTRON MICROSCOPY32016-05-04
1107ODE|1|ILarge subunit ribosomal RNA23S rRNAEscherichia coli K-12BacteriaRF02541E. coli 50S ribosome LiCl core particleELECTRON MICROSCOPY2.842022-06-01

Release history

Release3.2443.2453.2463.2473.2483.2493.2503.2513.252
Date2022-08-172022-08-242022-08-312022-09-072022-09-142022-09-212022-09-282022-10-052022-10-12

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16HRM|1|1E. coli 70S d2d8 stapled ribosomeELECTRON MICROSCOPY2.964417
26XZ7|1|AE. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).ELECTRON MICROSCOPY2.12876
36XZB|1|A2E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).ELECTRON MICROSCOPY2.542878
46XZA|1|A2E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).ELECTRON MICROSCOPY2.662878
55J7L|1|DAStructure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-RAY DIFFRACTION32886
65J91|1|DAStructure of the Wild-type 70S E coli ribosome bound to TigecyclineX-RAY DIFFRACTION2.962886
75J5B|1|DAStructure of the WT E coli ribosome bound to tetracyclineX-RAY DIFFRACTION2.82886
84YBB|1|DAHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.12883
96I7V|1|DARibosomal protein paralogs bL31 and bL36X-RAY DIFFRACTION2.92875
106WYV|1|IE. coli 50S ribosome bound to compounds 47 and VS1ELECTRON MICROSCOPY2.752876
116PCH|1|IE. coli 50S ribosome bound to compound 21ELECTRON MICROSCOPY2.92876
126PC8|1|IE. coli 50S ribosome bound to compound 40qELECTRON MICROSCOPY2.92876
136PCT|1|IE. coli 50S ribosome bound to compound 41qELECTRON MICROSCOPY2.82876
146PCQ|1|IE. coli 50S ribosome bound to VM2ELECTRON MICROSCOPY2.62876
156PCR|1|IE. coli 50S ribosome bound to compound 40oELECTRON MICROSCOPY2.52876
166PC6|1|IE. coli 50S ribosome bound to compound 47ELECTRON MICROSCOPY2.52876
176PC5|1|IE. coli 50S ribosome bound to compounds 46 and VS1ELECTRON MICROSCOPY2.72876
186PCS|1|IE. coli 50S ribosome bound to compound 40eELECTRON MICROSCOPY2.82876
196PC7|1|IE. coli 50S ribosome bound to compound 46ELECTRON MICROSCOPY2.52876
206PJ6|1|IHigh resolution cryo-EM structure of E.coli 50SELECTRON MICROSCOPY2.22874
217LVK|1|ICfr-modified 50S subunit from Escherichia coliELECTRON MICROSCOPY2.22876
226U48|1|CAE. coli 50S with phazolicin (PHZ) bound in exit tunnelELECTRON MICROSCOPY2.872875
235J5B|1|CAStructure of the WT E coli ribosome bound to tetracyclineX-RAY DIFFRACTION2.82876
245J91|1|CAStructure of the Wild-type 70S E coli ribosome bound to TigecyclineX-RAY DIFFRACTION2.962876
255J7L|1|CAStructure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-RAY DIFFRACTION32875
264YBB|1|CAHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.12876
276I7V|1|CARibosomal protein paralogs bL31 and bL36X-RAY DIFFRACTION2.92898
284U24|1|DACrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.92897
294U26|1|DACrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.82897
304U25|1|DACrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.92897
314U27|1|DACrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.82897
324U1V|1|DACrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION32897
334U20|1|DACrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.92897
344U1U|1|DACrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.952897
354V9D|1|DAStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION32896
364WOI|1|CA4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION32897
374V9P|1|GAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
384V9O|1|GAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
394V9O|1|EAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
404V9P|1|EAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
414V9P|1|AAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
424V9O|1|AAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
434V9O|1|CAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
444V9P|1|CAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
457BL4|1|Ain vitro reconstituted 50S-ObgE-GMPPNP-RsfS particleELECTRON MICROSCOPY2.42897
467TOS|1|23SE. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20ELECTRON MICROSCOPY2.92903
477N1P|1|23Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformationELECTRON MICROSCOPY2.332882
487S1J|1|IWild-type Escherichia coli ribosome with antibiotic radezolidELECTRON MICROSCOPY2.472876
497S1K|1|ICfr-modified Escherichia coli stalled ribosome with antibiotic radezolidELECTRON MICROSCOPY2.422875
507S1H|1|IWild-type Escherichia coli ribosome with antibiotic linezolidELECTRON MICROSCOPY2.352876
517S1G|1|Iwild-type Escherichia coli stalled ribosome with antibiotic linezolidELECTRON MICROSCOPY2.482874
527S1I|1|IWild-type Escherichia coli stalled ribosome with antibiotic radezolidELECTRON MICROSCOPY2.482874
537ZQ5|1|b70S E. coli ribosome with truncated uL23 and uL24 loopsELECTRON MICROSCOPY2.72900
547ZP8|1|b70S E. coli ribosome with a stalled filamin domain 5 nascent chainELECTRON MICROSCOPY2.22901
557Z20|1|b70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chainELECTRON MICROSCOPY2.292901
567ZQ6|1|b70S E. coli ribosome with truncated uL23 and uL24 loops and a stalled filamin domain 5 nascent chainELECTRON MICROSCOPY2.752901
576QDW|1|bCryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptideELECTRON MICROSCOPY2.832888
586YS3|1|bCryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptideELECTRON MICROSCOPY2.582888
597PJS|1|AStructure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)ELECTRON MICROSCOPY2.352880
606YSS|1|AStructure of the P+9 ArfB-ribosome complex in the post-hydrolysis stateELECTRON MICROSCOPY2.62880
617K00|1|aStructure of the Bacterial Ribosome at 2 Angstrom ResolutionELECTRON MICROSCOPY1.982729
626ZU1|1|BAE. coli 70S-RNAP expressome complex in uncoupled state 2ELECTRON MICROSCOPY32876
636ZTP|1|BAE. coli 70S-RNAP expressome complex in uncoupled state 6ELECTRON MICROSCOPY32876
646ZTO|1|BAE. coli 70S-RNAP expressome complex in uncoupled state 1ELECTRON MICROSCOPY32876
657P3K|1|aCryo-EM structure of 70S ribosome stalled with TnaC peptide (control)ELECTRON MICROSCOPY2.92730
667OIZ|1|aCryo-EM structure of 70S ribosome stalled with TnaC peptideELECTRON MICROSCOPY2.92730
677NWT|1|1Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)ELECTRON MICROSCOPY2.662881
685NWY|1|N2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complexELECTRON MICROSCOPY2.92898
695MDV|1|1Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)ELECTRON MICROSCOPY2.972881
707SA4|1|1Damaged 70S ribosome with PrfH boundELECTRON MICROSCOPY2.552881
716ORE|1|1Release complex 70SELECTRON MICROSCOPY2.92881
727NSO|1|AStructure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with P-tRNAELECTRON MICROSCOPY2.92903
736Y69|1|ACryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinXELECTRON MICROSCOPY2.862887
746H4N|1|AStructure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli RibosomeELECTRON MICROSCOPY32900
757ST6|1|1Pre translocation, non-rotated 70S ribosome (Structure I)ELECTRON MICROSCOPY32903
767ST2|1|1Post translocation, non-rotated 70S ribosome with EF-G dissociated (Structure VII)ELECTRON MICROSCOPY2.92903
776WD0|1|1Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-A)ELECTRON MICROSCOPY32903
786WDE|1|1Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-B)ELECTRON MICROSCOPY32903
795AFI|1|A2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.92876
805WFS|1|A70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)ELECTRON MICROSCOPY32876
815WDT|1|A70S ribosome-EF-Tu H84A complex with GppNHpELECTRON MICROSCOPY32876
827OIF|1|1CspA-27 cotranslational folding intermediate 2ELECTRON MICROSCOPY32881
837OII|1|1CspA-70 cotranslational folding intermediate 2ELECTRON MICROSCOPY32881
847OT5|1|1CspA-70 cotranslational folding intermediate 1ELECTRON MICROSCOPY2.92881
857O1C|1|BACryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome-RF2 complex stalled in response to L-tryptophanELECTRON MICROSCOPY2.62874
867O19|1|BACryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophanELECTRON MICROSCOPY2.92874
877O1A|1|BACryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophanELECTRON MICROSCOPY2.42874
886TC3|1|23S1Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)ELECTRON MICROSCOPY2.72874
896TBV|1|23S1Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)ELECTRON MICROSCOPY2.72874
907B5K|1|AE. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.ELECTRON MICROSCOPY2.92874
917N31|1|23Elongating 70S ribosome complex in a post-translocation (POST) conformationELECTRON MICROSCOPY2.692882
925IQR|1|1Structure of RelA bound to the 70S ribosomeELECTRON MICROSCOPY32882
937ZOD|1|b70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobiaELECTRON MICROSCOPY2.562901
944WOI|1|BA4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION32897
954V9D|1|CAStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION32897
964U1U|1|BACrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.952897
974U20|1|BACrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.92897
984U1V|1|BACrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION32897
994U25|1|BACrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.92897
1004U27|1|BACrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.82897
1014U26|1|BACrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.82897
1024U24|1|BACrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.92897
1037N30|1|23Elongating 70S ribosome complex in a hybrid-H2* pre-translocation (PRE-H2*) conformationELECTRON MICROSCOPY2.662879
1047N2U|1|23Elongating 70S ribosome complex in a hybrid-H1 pre-translocation (PRE-H1) conformationELECTRON MICROSCOPY2.532880
1057N2V|1|23Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)ELECTRON MICROSCOPY2.542881
1067N2C|1|23Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)ELECTRON MICROSCOPY2.722879
1077OTC|1|ACryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin BELECTRON MICROSCOPY2.92879
1087UG7|1|2370S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin BELECTRON MICROSCOPY2.582879
1096QUL|1|AStructure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolidELECTRON MICROSCOPY32799
1107ODE|1|IE. coli 50S ribosome LiCl core particleELECTRON MICROSCOPY2.841986