RNA 3D Hub //

Equivalence class NR_3.0_83717.18 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15J7L|1|DA (rep)Large subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-ray diffraction32016-07-27
25J5B|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structure of the WT E coli ribosome bound to tetracyclineX-ray diffraction2.82016-07-27
35J91|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structure of the Wild-type 70S E coli ribosome bound to TigecyclineX-ray diffraction2.962016-07-06
44YBB|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541High-resolution structure of the Escherichia coli ribosomeX-ray diffraction2.12015-03-18
55J91|1|CALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structure of the Wild-type 70S E coli ribosome bound to TigecyclineX-ray diffraction2.962016-07-06
65J5B|1|CALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structure of the WT E coli ribosome bound to tetracyclineX-ray diffraction2.82016-07-27
74V9P|1|EALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
84V9O|1|EALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
95J7L|1|CALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-ray diffraction32016-07-27
104V9D|1|CALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-ray diffraction32014-07-09
114U27|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to flopristin and linopristin.X-ray diffraction2.82014-07-30
124U25|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to virginiamycin M1.X-ray diffraction2.92014-07-30
135IQR|1|1Large subunit ribosomal RNALSU rRNAEscherichia coliBacteriaRF02541Structure of RelA bound to the 70S ribosomeElectron microscopy32016-05-04
144U24|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to dalfopristin.X-ray diffraction2.92014-07-30
154V9P|1|CALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
164V9P|1|AALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
174V9O|1|AALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
184U1U|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to quinupristin.X-ray diffraction2.952014-07-30
194V9O|1|CALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
204U1V|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to linopristin.X-ray diffraction32014-07-30
214V9P|1|GALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
224U20|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to flopristin.X-ray diffraction2.92014-07-30
234U26|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-ray diffraction2.82014-07-30
244YBB|1|CALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541High-resolution structure of the Escherichia coli ribosomeX-ray diffraction2.12015-03-18
254WOI|1|BALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF025414,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-ray diffraction32015-08-05
265AFI|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF025412.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMElectron microscopy2.92015-03-11
274V9D|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-ray diffraction32014-07-09
284U1U|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to quinupristin.X-ray diffraction2.952014-07-30
294WOI|1|CALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF025414,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-ray diffraction32015-08-05
304U20|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to flopristin.X-ray diffraction2.92014-07-30
314U1V|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to linopristin.X-ray diffraction32014-07-30
324U25|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to virginiamycin M1.X-ray diffraction2.92014-07-30
334V9O|1|GALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
344U27|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to flopristin and linopristin.X-ray diffraction2.82014-07-30
354U24|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to dalfopristin.X-ray diffraction2.92014-07-30
364U26|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-ray diffraction2.82014-07-30

Release history

Release2.892.902.912.922.932.94
Date2016-08-192016-08-262016-09-022016-09-092016-09-162016-09-23

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.0_83717.18NR_all_83717.172.89(36) 4V9D|1|DA, 4U1U|1|DA, 5J5B|1|CA, 4U27|1|BA, 4V9P|1|EA, 4U20|1|BA, 4V9D|1|CA, 4U26|1|DA, 4U1V|1|DA, 4V9O|1|CA, 5J7L|1|CA, 4WOI|1|BA, 4U24|1|BA, 4V9O|1|AA, 5J5B|1|DA, 4V9P|1|GA, 4U20|1|DA, 4V9O|1|EA, 5J91|1|CA, 4YBB|1|CA, 4U24|1|DA, 5J7L|1|DA, 4WOI|1|CA, 5J91|1|DA, 4YBB|1|DA, 4U25|1|DA, 4V9O|1|GA, 4U25|1|BA, 4U1U|1|BA, 5IQR|1|1, 4V9P|1|CA, 4U27|1|DA, 5AFI|1|A, 4U26|1|BA, 4V9P|1|AA, 4U1V|1|BA(0) (122) 4V6S|1|AB, 5J8A|1|DA, 4V9C|1|BA, 4V64|1|DB, 4V85|1|BA, 4V5Y|1|DB, 4V7V|1|BA, 2RDO|1|B, 4V73|1|BA, 4V71|1|BA, 4V4Q|1|BB, 4V6D|1|BA, 4V6C|1|BA, 3DG4|1|B, 4V66|1|BB, 4V79|1|BA, 4V77|1|BA, 4V52|1|BB, 5GAD|1|A, 3JBU|1|b, 3J9Z|1|LA, 4V7D|1|AA, 3J8G|1|B, 4V56|1|BB, 4V55|1|BB, 5IT8|1|DA, 4V7U|1|BA, 4V5B|1|AB, 4V7T|1|BA, 5JU8|1|BA, 5JC9|1|DA, 4V57|1|BB, 4V6V|1|BA, 4V5H|1|BB, 1C2W|1|B, 4V4V|1|B0, 4V6Z|1|BA, 3J5L|1|A, 3DG0|1|B, 4V53|1|BB, 5GAF|1|A, 4V50|1|BB, 4V7S|1|BA, 4V7B|1|BA, 5J88|1|DA, 4V6O|1|BB, 5GAH|1|A, 4V47|1|A0, 4WWW|1|RA, 4WF1|1|BA, 4V75|1|BA, 4V6K|1|AB, 5ADY|1|B, 4V6E|1|BA, 4V54|1|BB, 4V6Q|1|BB, 3JCJ|1|A, 3JCD|1|A, 4V6M|1|B8, 4V4H|1|BB, 4CSU|1|B, 4V6T|1|BA, 4UY8|1|A, 4V65|1|BB, 4V64|1|BB, 2J28|1|B, 4V5Y|1|BB, 4V74|1|BA, 4V72|1|BA, 4V4Q|1|DB, 4WF1|1|DA, 3J7Z|1|A, 3DG5|1|B, 4V78|1|BA, 3DG2|1|B, 4V53|1|DB, 4V52|1|DB, 5GAE|1|A, 4V7S|1|DA, 4V7I|1|A8, 4V55|1|DB, 4V7C|1|BA, 5J8A|1|CA, 5J88|1|CA, 4V54|1|DB, 4V6P|1|BB, 5IT8|1|CA, 3JBV|1|b, 4V6N|1|AB, 4V5B|1|CB, 5JTE|1|BA, 4V57|1|DB, 4V56|1|DB, 4V6Y|1|BA, 5JC9|1|CA,

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.0_83717.18NR_3.0_83717.192.95(36) 4U1U|1|BA, 4V9O|1|GA, 4V9P|1|AA, 4V9P|1|CA, 4V9P|1|EA, 4V9P|1|GA, 4WOI|1|BA, 4WOI|1|CA, 4YBB|1|CA, 4YBB|1|DA, 5AFI|1|A, 5IQR|1|1, 5J5B|1|CA, 5J5B|1|DA, 5J7L|1|CA, 5J7L|1|DA, 5J91|1|CA, 4V9O|1|EA, 4V9O|1|CA, 4U1U|1|DA, 4U1V|1|BA, 4U1V|1|DA, 4U20|1|BA, 4U20|1|DA, 4U24|1|BA, 4U24|1|DA, 4U25|1|BA, 4U25|1|DA, 4U26|1|BA, 4U26|1|DA, 4U27|1|BA, 4U27|1|DA, 4V9D|1|CA, 4V9D|1|DA, 4V9O|1|AA, 5J91|1|DA(0) (0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14YBB|1|DAHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.12883
25J5B|1|DAStructure of the WT E coli ribosome bound to tetracyclineX-RAY DIFFRACTION2.82886
35J91|1|DAStructure of the Wild-type 70S E coli ribosome bound to TigecyclineX-RAY DIFFRACTION2.962886
45J7L|1|DAStructure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-RAY DIFFRACTION32886
55J7L|1|CAStructure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-RAY DIFFRACTION32875
65J5B|1|CAStructure of the WT E coli ribosome bound to tetracyclineX-RAY DIFFRACTION2.82876
75J91|1|CAStructure of the Wild-type 70S E coli ribosome bound to TigecyclineX-RAY DIFFRACTION2.962876
84YBB|1|CAHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.12876
94U24|1|DACrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.92897
104U26|1|DACrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.82897
114U25|1|DACrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.92897
124U27|1|DACrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.82897
134U1V|1|DACrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION32897
144U20|1|DACrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.92897
154U1U|1|DACrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.952897
164V9D|1|DAStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION32896
174WOI|1|CA4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION32897
184V9P|1|GAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
194V9O|1|GAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
204V9O|1|EAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
214V9P|1|EAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
224V9P|1|AAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
234V9O|1|AAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
244V9O|1|CAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
254V9P|1|CAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
265AFI|1|A2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.92876
275IQR|1|1Structure of RelA bound to the 70S ribosomeELECTRON MICROSCOPY32882
284U24|1|BACrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.92897
294U26|1|BACrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.82897
304U25|1|BACrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.92897
314U27|1|BACrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.82897
324U1V|1|BACrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION32897
334U20|1|BACrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.92897
344U1U|1|BACrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.952897
354V9D|1|CAStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION32897
364WOI|1|BA4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION32897
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