BGSU RNA Site

Equivalence class NR_3.0_83717.2 Obsolete

#IFECompound(s)RNA source organismTitleMethodResolutionDate
14V9D|1|CA (rep)23S rRNAEscherichia coliStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION32014-07-09
24V9P|1|EA23S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
34V9O|1|EA23S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
44U27|1|BA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.82014-07-30
54U25|1|BA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.92014-07-30
64U24|1|BA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.92014-07-30
74V9P|1|CA23S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
84V9P|1|AA23S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
94V9O|1|AA23S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
104U1U|1|BA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.952014-07-30
114V9O|1|CA23S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
124U1V|1|BA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION32014-07-30
134V9P|1|GA23S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
144U26|1|BA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.82014-07-30
154U20|1|BA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.92014-07-30
164V9D|1|DA23S rRNAEscherichia coliStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION32014-07-09
174U1U|1|DA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.952014-07-30
184U20|1|DA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.92014-07-30
194U1V|1|DA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION32014-07-30
204U25|1|DA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.92014-07-30
214V9O|1|GA23S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
224U27|1|DA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.82014-07-30
234U24|1|DA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.92014-07-30
244U26|1|DA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.82014-07-30

Release history

Release2.32.42.52.62.72.82.92.102.112.122.13
Date2014-12-262015-01-022015-01-092015-01-162015-01-232015-01-302015-02-062015-02-132015-02-202015-02-272015-03-06

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.0_83717.2NR_all_83717.12.3(24) 4V9O|1|AA, 4V9D|1|DA, 4V9O|1|GA, 4V9O|1|EA, 4U24|1|DA, 4U25|1|DA, 4U26|1|DA, 4V9O|1|CA, 4U24|1|BA, 4U1U|1|DA, 4U25|1|BA, 4U26|1|BA, 4U20|1|DA, 4U1U|1|BA, 4U20|1|BA, 4V9P|1|GA, 4V9P|1|CA, 4U1V|1|DA, 4V9P|1|AA, 4U27|1|DA, 4U1V|1|BA, 4U27|1|BA, 4V9D|1|CA, 4V9P|1|EA(0) (93) 4V55|1|DB, 4V54|1|BB, 4V9C|1|BA, 3DG0|1|B, 4V7T|1|BA, 4V7V|1|DA, 4V5H|1|BB, 2J28|1|B, 4V7I|1|A8, 4V7S|1|BA, 4V57|1|DB, 4V7B|1|BA, 4V7C|1|BA, 4V78|1|BA, 4V6M|1|B8, 4V77|1|BA, 4V4H|1|BB, 4V74|1|BA, 4V6D|1|BA, 4UY8|1|A, 4V69|1|BB, 4V6S|1|AB, 4V54|1|DB, 4V6P|1|BB, 4V5B|1|CB, 4V4W|1|B0, 4V53|1|BB, 4V75|1|BA, 4V57|1|BB, 4V4Q|1|BB, 4V72|1|BA, 4V48|1|A0, 4CSU|1|B, 4V7V|1|BA, 3J8G|1|B, 4V7T|1|DA, 3DG5|1|B, 4WF1|1|BA, 4V89|1|BA, 4V6Q|1|BB, 3J5L|1|A, 4V71|1|BA, 4V6E|1|BA, 4V6N|1|AB, 3DG2|1|B, 4V6Y|1|BA, 4V6C|1|DA, 4V66|1|BB, 4V64|1|BB, 4V65|1|BB, 4V50|1|BB, 4V5Y|1|DB, 4V4Q|1|DB, 4V50|1|DB, 4V7U|1|DA, 4V5B|1|AB, 4WF1|1|DA, 4V56|1|DB, 4V79|1|BA, 4V7A|1|BA, 4V76|1|BA, 4V73|1|BA, 4V6D|1|DA, 4V6Z|1|BA, 4V52|1|BB, 4V6K|1|AB, 4V56|1|BB, 4V70|1|BA, 4V6V|1|BA, 3J7Z|1|A, 3DG4|1|B, 4V7S|1|DA, 4V7D|1|AA, 2RDO|1|B, 4V6O|1|BB, 4V7U|1|BA, 4V6L|1|BB, 3BBX|1|B, 4V6T|1|BA, 1C2W|1|B, 4V64|1|DB, 4V5Y|1|BB, 4V4H|1|DB, 4V47|1|A0, 4V85|1|BA, 4V53|1|DB, 4V9C|1|DA, 4V6E|1|DA, 4V55|1|BB, 4V6C|1|BA, 4V52|1|DB, 4V4V|1|B0, 4V6R|1|BB

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14U24|1|DACrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.92897
24U26|1|DACrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.82897
34U25|1|DACrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.92897
44U27|1|DACrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.82897
54U1V|1|DACrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION32897
64U20|1|DACrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.92897
74U1U|1|DACrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.952897
84V9D|1|DAStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION32896
94V9P|1|GAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
104V9O|1|GAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
114V9O|1|EAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
124V9P|1|EAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
134V9P|1|AAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
144V9O|1|AAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
154V9O|1|CAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
164V9P|1|CAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
174U24|1|BACrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.92897
184U26|1|BACrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.82897
194U25|1|BACrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.92897
204U27|1|BACrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.82897
214U1V|1|BACrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION32897
224U20|1|BACrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.92897
234U1U|1|BACrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.952897
244V9D|1|CAStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION32897