NR_3.0_83717.28

Members (37)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	5J7L\|1\|DA (rep)	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-ray diffraction	3	2016-07-27
2	5J5B\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the WT E coli ribosome bound to tetracycline	X-ray diffraction	2.8	2016-07-27
3	5J91\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-ray diffraction	2.96	2016-07-06
4	4YBB\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	2015-03-18
5	5MDV\|1\|1	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)	Electron microscopy	2.97	2016-12-14
6	5J91\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-ray diffraction	2.96	2016-07-06
7	5J5B\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the WT E coli ribosome bound to tetracycline	X-ray diffraction	2.8	2016-07-27
8	4V9P\|1\|EA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
9	4V9O\|1\|EA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
10	5J7L\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-ray diffraction	3	2016-07-27
11	4V9D\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-ray diffraction	3	2014-07-09
12	4U27\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-ray diffraction	2.8	2014-07-30
13	4U25\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-ray diffraction	2.9	2014-07-30
14	5IQR\|1\|1	Large subunit ribosomal RNA	LSU rRNA	Escherichia coli	Bacteria	RF02541	Structure of RelA bound to the 70S ribosome	Electron microscopy	3	2016-05-04
15	4U24\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-ray diffraction	2.9	2014-07-30
16	4V9P\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
17	4V9P\|1\|AA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
18	4V9O\|1\|AA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
19	4U1U\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to quinupristin.	X-ray diffraction	2.95	2014-07-30
20	4V9O\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
21	4U1V\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to linopristin.	X-ray diffraction	3	2014-07-30
22	4V9P\|1\|GA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
23	4U20\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to flopristin.	X-ray diffraction	2.9	2014-07-30
24	4U26\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-ray diffraction	2.8	2014-07-30
25	4YBB\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	2015-03-18
26	4WOI\|1\|BA	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-ray diffraction	3	2015-08-05
27	5AFI\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM	Electron microscopy	2.9	2015-03-11
28	4V9D\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-ray diffraction	3	2014-07-09
29	4U1U\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to quinupristin.	X-ray diffraction	2.95	2014-07-30
30	4WOI\|1\|CA	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-ray diffraction	3	2015-08-05
31	4U20\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to flopristin.	X-ray diffraction	2.9	2014-07-30
32	4U1V\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to linopristin.	X-ray diffraction	3	2014-07-30
33	4U25\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-ray diffraction	2.9	2014-07-30
34	4V9O\|1\|GA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
35	4U27\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-ray diffraction	2.8	2014-07-30
36	4U24\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-ray diffraction	2.9	2014-07-30
37	4U26\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-ray diffraction	2.8	2014-07-30

Release history

Release	2.132	2.133	2.134	2.135	2.136	2.137
Date	2017-06-21	2017-06-24	2017-06-28	2017-07-04	2017-07-10	2017-07-15

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_3.0_83717.28	NR_3.0_83717.27	2.132	(37) 4U1U\|1\|BA, 4V9P\|1\|AA, 4V9P\|1\|CA, 4V9P\|1\|EA, 4V9P\|1\|GA, 4WOI\|1\|BA, 4WOI\|1\|CA, 4YBB\|1\|CA, 4YBB\|1\|DA, 5AFI\|1\|A, 5IQR\|1\|1, 5J5B\|1\|CA, 5J5B\|1\|DA, 5J7L\|1\|CA, 5J7L\|1\|DA, 5J91\|1\|CA, 5J91\|1\|DA, 4V9O\|1\|GA, 4V9O\|1\|EA, 4V9O\|1\|CA, 4U1U\|1\|DA, 4U1V\|1\|BA, 4U1V\|1\|DA, 4U20\|1\|BA, 4U20\|1\|DA, 4U24\|1\|BA, 4U24\|1\|DA, 4U25\|1\|BA, 4U25\|1\|DA, 4U26\|1\|BA, 4U26\|1\|DA, 4U27\|1\|BA, 4U27\|1\|DA, 4V9D\|1\|CA, 4V9D\|1\|DA, 4V9O\|1\|AA, 5MDV\|1\|1	(0)	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_3.0_83717.28	NR_3.0_83717.29	2.138	(37) 4WOI\|1\|CA, 4U25\|1\|DA, 4WOI\|1\|BA, 4U25\|1\|BA, 4V9P\|1\|GA, 4U24\|1\|DA, 4V9P\|1\|EA, 4U24\|1\|BA, 4V9P\|1\|CA, 4U20\|1\|DA, 4V9P\|1\|AA, 5MDV\|1\|1, 4U20\|1\|BA, 4V9O\|1\|GA, 5J91\|1\|DA, 4U1V\|1\|DA, 5J91\|1\|CA, 4U1V\|1\|BA, 4V9O\|1\|EA, 5J7L\|1\|DA, 4U1U\|1\|DA, 4V9O\|1\|CA, 5J7L\|1\|CA, 4U1U\|1\|BA, 4V9O\|1\|AA, 5J5B\|1\|DA, 4V9D\|1\|DA, 5J5B\|1\|CA, 4V9D\|1\|CA, 5IQR\|1\|1, 4U27\|1\|DA, 5AFI\|1\|A, 4U27\|1\|BA, 4YBB\|1\|DA, 4U26\|1\|DA, 4YBB\|1\|CA, 4U26\|1\|BA	(0)	(1) 5NWY\|1\|N

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	4YBB\|1\|DA	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	2883
2	5J5B\|1\|DA	Structure of the WT E coli ribosome bound to tetracycline	X-RAY DIFFRACTION	2.8	2886
3	5J91\|1\|DA	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-RAY DIFFRACTION	2.96	2886
4	5J7L\|1\|DA	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-RAY DIFFRACTION	3	2886
5	5J7L\|1\|CA	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-RAY DIFFRACTION	3	2875
6	5J91\|1\|CA	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-RAY DIFFRACTION	2.96	2876
7	5J5B\|1\|CA	Structure of the WT E coli ribosome bound to tetracycline	X-RAY DIFFRACTION	2.8	2876
8	4YBB\|1\|CA	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	2876
9	4U24\|1\|DA	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-RAY DIFFRACTION	2.9	2897
10	4U26\|1\|DA	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-RAY DIFFRACTION	2.8	2897
11	4U25\|1\|DA	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-RAY DIFFRACTION	2.9	2897
12	4U27\|1\|DA	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-RAY DIFFRACTION	2.8	2897
13	4U1V\|1\|DA	Crystal structure of the E. coli ribosome bound to linopristin.	X-RAY DIFFRACTION	3	2897
14	4U20\|1\|DA	Crystal structure of the E. coli ribosome bound to flopristin.	X-RAY DIFFRACTION	2.9	2897
15	4U1U\|1\|DA	Crystal structure of the E. coli ribosome bound to quinupristin.	X-RAY DIFFRACTION	2.95	2897
16	4V9D\|1\|DA	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-RAY DIFFRACTION	3	2896
17	4WOI\|1\|CA	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-RAY DIFFRACTION	3	2897
18	4V9P\|1\|GA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
19	4V9O\|1\|GA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
20	4V9O\|1\|EA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
21	4V9P\|1\|EA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
22	4V9P\|1\|AA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
23	4V9O\|1\|AA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
24	4V9O\|1\|CA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
25	4V9P\|1\|CA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
26	5AFI\|1\|A	2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM	ELECTRON MICROSCOPY	2.9	2876
27	5MDV\|1\|1	Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)	ELECTRON MICROSCOPY	2.97	2881
28	5IQR\|1\|1	Structure of RelA bound to the 70S ribosome	ELECTRON MICROSCOPY	3	2882
29	4U24\|1\|BA	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-RAY DIFFRACTION	2.9	2897
30	4U26\|1\|BA	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-RAY DIFFRACTION	2.8	2897
31	4U25\|1\|BA	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-RAY DIFFRACTION	2.9	2897
32	4U27\|1\|BA	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-RAY DIFFRACTION	2.8	2897
33	4U1V\|1\|BA	Crystal structure of the E. coli ribosome bound to linopristin.	X-RAY DIFFRACTION	3	2897
34	4U20\|1\|BA	Crystal structure of the E. coli ribosome bound to flopristin.	X-RAY DIFFRACTION	2.9	2897
35	4U1U\|1\|BA	Crystal structure of the E. coli ribosome bound to quinupristin.	X-RAY DIFFRACTION	2.95	2897
36	4V9D\|1\|CA	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-RAY DIFFRACTION	3	2897
37	4WOI\|1\|BA	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-RAY DIFFRACTION	3	2897

Equivalence class NR_3.0_83717.28 Obsolete

Release history

Parents

Children