Equivalence class NR_3.0_86909.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7A9N|1|K+ 7A9N|1|L (rep) | RNA (5'-R(*CP*UP*GP*GP*GP*CP*GP*G)-3'), RNA (5'-R(*CP*CP*GP*CP*CP*UP*GP*G)-3') | Thermus thermophilus | Bacteria | Racemic compound of RNA duplexes. | X-ray diffraction | 1.602 | 2021-05-26 | ||
| 2 | 6ZRS|1|K+ 6ZRS|1|L | RNA (5'-R(*CP*UP*GP*GP*GP*CP*GP*G)-3'), RNA (5'-R(*CP*CP*GP*CP*CP*UP*GP*G)-3') | Thermus thermophilus | Bacteria | Racemic compound of RNA duplexes. | X-ray diffraction | 1.52 | 2021-05-26 | ||
| 3 | 7A9O|1|K+ 7A9O|1|L | RNA (5'-R(*CP*UP*GP*GP*GP*CP*GP*G)-3'), RNA (5'-R(*CP*CP*GP*CP*CP*UP*GP*G)-3') | Thermus thermophilus | Bacteria | Racemic compound of RNA duplexes. | X-ray diffraction | 1.601 | 2021-05-26 | ||
| 4 | 6ZR1|1|K+ 6ZR1|1|L | RNA (5'-R(*CP*UP*GP*GP*GP*CP*GP*G)-3'), RNA (5'-R(*CP*CP*GP*CP*CP*UP*GP*G)-3') | Thermus thermophilus | Bacteria | Racemic compound of RNA duplexes. | X-ray diffraction | 1.528 | 2021-05-26 | ||
| 5 | 6ZQ9|1|K+ 6ZQ9|1|L | RNA (5'-R(*CP*UP*GP*GP*GP*CP*GP*G)-3'), RNA (5'-R(*CP*CP*GP*CP*CP*UP*GP*G)-3') | Thermus thermophilus | Bacteria | Racemic compound of RNA duplexes. | X-ray diffraction | 1.5 | 2021-05-26 | ||
| 6 | 6ZPF|1|K+ 6ZPF|1|L | RNA (5'-R(*CP*UP*GP*GP*GP*CP*GP*G)-3'), RNA (5'-R(*CP*CP*GP*CP*CP*UP*GP*G)-3') | Thermus thermophilus | Bacteria | Racemic compound of RNA duplexes. | X-ray diffraction | 1.442 | 2021-05-26 | ||
| 7 | 6ZWU|1|M+ 6ZWU|1|N | RNA (5'-R(*CP*UP*GP*GP*GP*CP*GP*G)-3'), RNA (5'-R(*CP*CP*GP*CP*CP*UP*GP*G)-3') | Thermus thermophilus | Bacteria | Racemic compound of RNA duplexes. | X-ray diffraction | 1.527 | 2021-05-26 | ||
| 8 | 7A9T|1|K+ 7A9T|1|L | RNA (5'-R(*CP*UP*GP*GP*GP*CP*GP*G)-3'), RNA (5'-R(*CP*CP*GP*CP*CP*UP*GP*G)-3') | Thermus thermophilus | Bacteria | Racemic compound of RNA duplexes. | X-ray diffraction | 1.7 | 2021-05-26 | ||
| 9 | 6ZW3|1|M+ 6ZW3|1|N | RNA (5'-R(*CP*UP*GP*GP*GP*CP*GP*G)-3'), RNA (5'-R(*CP*CP*GP*CP*CP*UP*GP*G)-3') | Thermus thermophilus | Bacteria | Racemic compound of RNA duplexes. | X-ray diffraction | 1.522 | 2021-05-26 | ||
| 10 | 6ZX5|1|K+ 6ZX5|1|L | RNA (5'-R(*CP*UP*GP*GP*GP*CP*GP*G)-3'), RNA (5'-R(*CP*CP*GP*CP*CP*UP*GP*G)-3') | Thermus thermophilus | Bacteria | Racemic compound of RNA duplexes. | X-ray diffraction | 1.523 | 2021-05-26 | ||
| 11 | 7A9Q|1|K+ 7A9Q|1|L | RNA (5'-R(*CP*UP*GP*GP*GP*CP*GP*G)-3'), RNA (5'-R(*CP*CP*GP*CP*CP*UP*GP*G)-3') | Thermus thermophilus | Bacteria | Racemic compound of RNA duplexes. | X-ray diffraction | 2.185 | 2021-05-26 | ||
| 12 | 439D|1|A+ 439D|1|B | RNA (5'-R(*CP*UP*GP*GP*GP*CP*GP*G)-3'), RNA (5'-R(*CP*CP*GP*CP*CP*UP*GP*G)-3') | 5'-R(*CP*UP*GP*GP*GP*CP*GP*G)-3', 5'-R(*CP*CP*GP*CP*CP*UP*GP*G)-3' | X-ray diffraction | 1.6 | 2001-09-14 | ||||
| 13 | 7A9L|1|M+ 7A9L|1|N | RNA (5'-R(*CP*UP*GP*GP*GP*CP*GP*G)-3'), RNA (5'-R(*CP*CP*GP*CP*CP*UP*GP*G)-3') | Thermus thermophilus | Bacteria | Racemic compound of RNA duplexes. | X-ray diffraction | 1.98 | 2021-05-26 | ||
| 14 | 6ZRL|1|M+ 6ZRL|1|N | RNA (5'-R(*CP*UP*GP*GP*GP*CP*GP*G)-3'), RNA (5'-R(*CP*CP*GP*CP*CP*UP*GP*G)-3') | Thermus thermophilus | Bacteria | Racemic compound of RNA duplexes. | X-ray diffraction | 1.53 | 2021-05-26 | ||
| 15 | 6ZX8|1|K+ 6ZX8|1|L | RNA (5'-R(*CP*UP*GP*GP*GP*CP*GP*G)-3'), RNA (5'-R(*CP*CP*GP*CP*CP*UP*GP*G)-3') | Thermus thermophilus | Bacteria | Racemic compound of RNA duplexes. | X-ray diffraction | 1.981 | 2021-05-26 | ||
| 16 | 7A9S|1|K+ 7A9S|1|L | RNA (5'-R(*CP*UP*GP*GP*GP*CP*GP*G)-3'), RNA (5'-R(*CP*CP*GP*CP*CP*UP*GP*G)-3') | Thermus thermophilus | Bacteria | Racemic compound of RNA duplexes. | X-ray diffraction | 2.29 | 2021-05-26 | ||
| 17 | 7A9R|1|M+ 7A9R|1|N | RNA (5'-R(*CP*UP*GP*GP*GP*CP*GP*G)-3'), RNA (5'-R(*CP*CP*GP*CP*CP*UP*GP*G)-3') | Thermus thermophilus | Bacteria | Racemic compound of RNA duplexes. | X-ray diffraction | 2.455 | 2021-05-26 | ||
| 18 | 7A9P|1|M+ 7A9P|1|N | RNA (5'-R(*CP*UP*GP*GP*GP*CP*GP*G)-3'), RNA (5'-R(*CP*CP*GP*CP*CP*UP*GP*G)-3') | Thermus thermophilus | Bacteria | Racemic compound of RNA duplexes. | X-ray diffraction | 1.985 | 2021-05-26 |
Release history
| Release | 3.180 | 3.181 | 3.182 | 3.183 | 3.184 | 3.185 | 3.186 | 3.187 | 3.188 | 3.189 | 3.190 | 3.191 | 3.192 | 3.193 | 3.194 | 3.195 | 3.196 | 3.197 | 3.198 | 3.199 | 3.200 | 3.201 | 3.202 | 3.203 | 3.204 | 3.205 | 3.206 | 3.207 | 3.208 | 3.209 | 3.210 | 3.211 | 3.212 | 3.213 | 3.214 | 3.215 | 3.216 | 3.217 | 3.218 | 3.219 | 3.220 | 3.221 | 3.222 | 3.223 | 3.224 | 3.225 | 3.226 | 3.227 | 3.228 | 3.229 | 3.230 | 3.231 | 3.232 | 3.233 | 3.234 | 3.235 | 3.236 | 3.237 | 3.238 | 3.239 | 3.240 | 3.241 | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2021-05-26 | 2021-06-02 | 2021-06-09 | 2021-06-16 | 2021-06-23 | 2021-06-30 | 2021-07-07 | 2021-07-14 | 2021-07-21 | 2021-07-28 | 2021-08-04 | 2021-08-11 | 2021-08-18 | 2021-08-25 | 2021-09-01 | 2021-09-08 | 2021-09-15 | 2021-09-22 | 2021-09-29 | 2021-10-06 | 2021-10-13 | 2021-10-20 | 2021-10-27 | 2021-11-03 | 2021-11-10 | 2021-11-17 | 2021-11-24 | 2021-12-01 | 2021-12-08 | 2021-12-15 | 2021-12-22 | 2021-12-29 | 2022-01-05 | 2022-01-12 | 2022-01-19 | 2022-01-26 | 2022-02-02 | 2022-02-09 | 2022-02-16 | 2022-02-23 | 2022-03-02 | 2022-03-09 | 2022-03-16 | 2022-03-23 | 2022-03-30 | 2022-04-06 | 2022-04-13 | 2022-04-20 | 2022-04-27 | 2022-05-04 | 2022-05-11 | 2022-05-18 | 2022-05-25 | 2022-06-01 | 2022-06-08 | 2022-06-15 | 2022-06-22 | 2022-06-29 | 2022-07-06 | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.0_86909.1 | NR_3.0_27697.1 | 3.180 | (1) 439D|1|A+439D|1|B | (17) 6ZPF|1|K+6ZPF|1|L, 6ZQ9|1|K+6ZQ9|1|L, 6ZR1|1|K+6ZR1|1|L, 6ZRL|1|M+6ZRL|1|N, 6ZRS|1|K+6ZRS|1|L, 6ZW3|1|M+6ZW3|1|N, 6ZWU|1|M+6ZWU|1|N, 6ZX5|1|K+6ZX5|1|L, 6ZX8|1|K+6ZX8|1|L, 7A9L|1|M+7A9L|1|N, 7A9N|1|K+7A9N|1|L, 7A9O|1|K+7A9O|1|L, 7A9P|1|M+7A9P|1|N, 7A9Q|1|K+7A9Q|1|L, 7A9R|1|M+7A9R|1|N, 7A9S|1|K+7A9S|1|L, 7A9T|1|K+7A9T|1|L | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 7A9P|1|M+7A9P|1|N | Racemic compound of RNA duplexes. | X-RAY DIFFRACTION | 1.985 | 8 |
| 2 | 6ZRL|1|M+6ZRL|1|N | Racemic compound of RNA duplexes. | X-RAY DIFFRACTION | 1.53 | 8 |
| 3 | 6ZW3|1|M+6ZW3|1|N | Racemic compound of RNA duplexes. | X-RAY DIFFRACTION | 1.522 | 8 |
| 4 | 6ZWU|1|M+6ZWU|1|N | Racemic compound of RNA duplexes. | X-RAY DIFFRACTION | 1.527 | 8 |
| 5 | 7A9L|1|M+7A9L|1|N | Racemic compound of RNA duplexes. | X-RAY DIFFRACTION | 1.98 | 8 |
| 6 | 7A9R|1|M+7A9R|1|N | Racemic compound of RNA duplexes. | X-RAY DIFFRACTION | 2.455 | 8 |
| 7 | 7A9S|1|K+7A9S|1|L | Racemic compound of RNA duplexes. | X-RAY DIFFRACTION | 2.29 | 8 |
| 8 | 7A9O|1|K+7A9O|1|L | Racemic compound of RNA duplexes. | X-RAY DIFFRACTION | 1.601 | 8 |
| 9 | 6ZR1|1|K+6ZR1|1|L | Racemic compound of RNA duplexes. | X-RAY DIFFRACTION | 1.528 | 8 |
| 10 | 7A9T|1|K+7A9T|1|L | Racemic compound of RNA duplexes. | X-RAY DIFFRACTION | 1.7 | 8 |
| 11 | 7A9N|1|K+7A9N|1|L | Racemic compound of RNA duplexes. | X-RAY DIFFRACTION | 1.602 | 8 |
| 12 | 6ZRS|1|K+6ZRS|1|L | Racemic compound of RNA duplexes. | X-RAY DIFFRACTION | 1.52 | 8 |
| 13 | 6ZPF|1|K+6ZPF|1|L | Racemic compound of RNA duplexes. | X-RAY DIFFRACTION | 1.442 | 8 |
| 14 | 6ZX5|1|K+6ZX5|1|L | Racemic compound of RNA duplexes. | X-RAY DIFFRACTION | 1.523 | 8 |
| 15 | 6ZQ9|1|K+6ZQ9|1|L | Racemic compound of RNA duplexes. | X-RAY DIFFRACTION | 1.5 | 8 |
| 16 | 6ZX8|1|K+6ZX8|1|L | Racemic compound of RNA duplexes. | X-RAY DIFFRACTION | 1.981 | 8 |
| 17 | 7A9Q|1|K+7A9Q|1|L | Racemic compound of RNA duplexes. | X-RAY DIFFRACTION | 2.185 | 8 |
| 18 | 439D|1|A+439D|1|B | 5'-R(*CP*UP*GP*GP*GP*CP*GP*G)-3', 5'-R(*CP*CP*GP*CP*CP*UP*GP*G)-3' | X-RAY DIFFRACTION | 1.6 | 8 |