#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
15D8T|1|A+ 5D8T|1|B (rep)RNA oligonucleotide containing (S)-C5'-Me-2'-FUsynthetic constructSyntheticRNA octamer containing (S)-5' methyl, 2'-F U.X-ray diffraction1.22016-06-29
26CY2|1|A+ 6CY2|1|BRNA (5'-R(*(CBV)P*GP*AP*AP*(UOA)P*UP*CP*G)-3')synthetic constructSyntheticRNA octamer containing 2'-OMe, 4'Calpha-OMe U.X-ray diffraction1.42018-08-29
36CXZ|1|A+ 6CXZ|1|BRNA (5'-R(*CP*GP*AP*AP*(U4M)P*UP*CP*G)-3')synthetic constructSyntheticRNA octamer containing 2'-F, 4'-Calpha-Me U.X-ray diffraction1.52018-08-29
45VR4|1|C+ 5VR4|1|DRNA (5'-R(*CP*GP*AP*AP*(UMO)P*UP*CP*G)-3')synthetic constructSyntheticRNA octamer containing 2'-F-4'-OMe U.X-ray diffraction1.52017-10-04
55VR4|1|A+ 5VR4|1|BRNA (5'-R(*CP*GP*AP*AP*(UMO)P*UP*CP*G)-3')synthetic constructSyntheticRNA octamer containing 2'-F-4'-OMe U.X-ray diffraction1.52017-10-04
66CY4|1|C+ 6CY4|1|DRNA (5'-R(*(CBV)P*GP*AP*AP*(UOB)P*UP*CP*G)-3')synthetic constructSyntheticRNA octamer containing 2'-OMe, 4'- Cbeta-OMe U.X-ray diffraction1.852018-08-29
76CY4|1|A+ 6CY4|1|BRNA (5'-R(*(CBV)P*GP*AP*AP*(UOB)P*UP*CP*G)-3')synthetic constructSyntheticRNA octamer containing 2'-OMe, 4'- Cbeta-OMe U.X-ray diffraction1.852018-08-29
86CY4|1|E+ 6CY4|1|FRNA (5'-R(*(CBV)P*GP*AP*AP*(UOB)P*UP*CP*G)-3')synthetic constructSyntheticRNA octamer containing 2'-OMe, 4'- Cbeta-OMe U.X-ray diffraction1.852018-08-29
96CY4|1|G+ 6CY4|1|HRNA (5'-R(*(CBV)P*GP*AP*AP*(UOB)P*UP*CP*G)-3')synthetic constructSyntheticRNA octamer containing 2'-OMe, 4'- Cbeta-OMe U.X-ray diffraction1.852018-08-29
105DER|1|A+ 5DER|1|BRNA oligonucleotide containing (R)-C5'-Me-2'-FUsynthetic constructSyntheticRNA oligonucleotide containing (R)-C5'-ME-2'F UX-ray diffraction1.82016-06-29
115DER|1|C+ 5DER|1|DRNA oligonucleotide containing (R)-C5'-Me-2'-FUsynthetic constructSyntheticRNA oligonucleotide containing (R)-C5'-ME-2'F UX-ray diffraction1.82016-06-29
126CY0|1|A+ 6CY0|1|BRNA (5'-R(*(CBV)P*GP*AP*AP*(UFB)P*UP*CP*G)-3')synthetic constructSyntheticRNA octamer containing 2'-F, 4'-Cbeta-OMe U.X-ray diffraction2.42018-08-29
136CY0|1|C+ 6CY0|1|DRNA (5'-R(*(CBV)P*GP*AP*AP*(UFB)P*UP*CP*G)-3')synthetic constructSyntheticRNA octamer containing 2'-F, 4'-Cbeta-OMe U.X-ray diffraction2.42018-08-29
146CY0|1|E+ 6CY0|1|FRNA (5'-R(*(CBV)P*GP*AP*AP*(UFB)P*UP*CP*G)-3')synthetic constructSyntheticRNA octamer containing 2'-F, 4'-Cbeta-OMe U.X-ray diffraction2.42018-08-29
156CY0|1|G+ 6CY0|1|HRNA (5'-R(*(CBV)P*GP*AP*AP*(UFB)P*UP*CP*G)-3')synthetic constructSyntheticRNA octamer containing 2'-F, 4'-Cbeta-OMe U.X-ray diffraction2.42018-08-29

Release history

Release3.753.763.773.783.793.803.813.823.833.843.853.863.873.883.893.903.913.923.933.943.953.963.973.983.993.1003.1013.1023.1033.1043.1053.1063.1073.1083.1093.1103.1113.1123.1133.1143.1153.1163.1173.1183.1193.1203.1213.1223.1233.1243.1253.1263.1273.1283.1293.1303.1313.1323.1333.1343.1353.1363.1373.1383.1393.1403.1413.1423.1433.1443.1453.1463.1473.1483.1493.1503.1513.1523.1533.1543.1553.1563.1573.1583.1593.1603.1613.1623.1633.1643.1653.1663.1673.1683.1693.1703.1713.1723.1733.1743.1753.1763.1773.1783.1793.1803.1813.1823.1833.1843.1853.1863.1873.1883.1893.1903.1913.1923.1933.1943.1953.1963.1973.1983.1993.2003.2013.2023.2033.2043.2053.2063.2073.2083.2093.2103.2113.2123.2133.2143.2153.2163.2173.2183.2193.2203.2213.2223.2233.2243.2253.2263.2273.2283.2293.2303.2313.2323.2333.2343.2353.2363.2373.2383.2393.2403.2413.2423.2433.2443.2453.2463.2473.2483.2493.2503.2513.2523.2533.2543.2553.2563.2573.2583.2593.2603.2613.2623.2633.2643.2653.2663.2673.2683.2693.2703.2713.2723.2733.2743.2753.2763.2773.2783.2793.280
Date2019-05-242019-05-312019-06-072019-06-142019-06-212019-06-282019-07-052019-07-122019-07-192019-07-262019-08-022019-08-092019-08-162019-08-232019-08-282019-09-042019-09-112019-09-192019-09-252019-10-032019-10-092019-10-162019-10-232019-10-302019-11-062019-11-132019-11-202019-11-272019-12-042019-12-112019-12-182019-12-252020-01-012020-01-082020-01-152020-01-222020-01-292020-02-052020-02-122020-02-192020-02-262020-03-042020-03-112020-03-182020-03-252020-04-012020-04-082020-04-152020-04-222020-04-292020-05-062020-05-132020-05-202020-05-272020-06-032020-06-102020-06-172020-06-242020-07-012020-07-082020-07-152020-07-222020-07-292020-08-052020-08-122020-08-192020-08-262020-09-022020-09-092020-09-162020-09-232020-09-302020-10-072020-10-142020-10-212020-10-282020-11-042020-11-112020-11-182020-11-252020-12-022020-12-092020-12-162020-12-232020-12-302021-01-062021-01-132021-01-202021-01-272021-02-032021-02-102021-02-172021-02-242021-03-032021-03-102021-03-172021-03-242021-03-312021-04-072021-04-142021-04-212021-04-282021-05-052021-05-122021-05-192021-05-262021-06-022021-06-092021-06-162021-06-232021-06-302021-07-072021-07-142021-07-212021-07-282021-08-042021-08-112021-08-182021-08-252021-09-012021-09-082021-09-152021-09-222021-09-292021-10-062021-10-132021-10-202021-10-272021-11-032021-11-102021-11-172021-11-242021-12-012021-12-082021-12-152021-12-222021-12-292022-01-052022-01-122022-01-192022-01-262022-02-022022-02-092022-02-162022-02-232022-03-022022-03-092022-03-162022-03-232022-03-302022-04-062022-04-132022-04-202022-04-272022-05-042022-05-112022-05-182022-05-252022-06-012022-06-082022-06-152022-06-222022-06-292022-07-062022-07-132022-07-202022-07-272022-08-032022-08-102022-08-172022-08-242022-08-312022-09-072022-09-142022-09-212022-09-282022-10-052022-10-122022-10-192022-10-262022-11-022022-11-092022-11-162022-11-232022-11-302022-12-072022-12-142022-12-212022-12-282023-01-042023-01-112023-01-182023-01-252023-02-012023-02-082023-02-152023-02-222023-03-012023-03-082023-03-152023-03-222023-03-292023-04-052023-04-122023-04-192023-04-26

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.0_87665.1NR_3.0_07963.13.75(1) 6CY4|1|C+6CY4|1|D(14) 6CY4|1|G+6CY4|1|H, 6CY4|1|E+6CY4|1|F, 6CY4|1|A+6CY4|1|B, 6CY2|1|A+6CY2|1|B, 6CY0|1|G+6CY0|1|H, 6CY0|1|E+6CY0|1|F, 6CY0|1|C+6CY0|1|D, 6CY0|1|A+6CY0|1|B, 6CXZ|1|A+6CXZ|1|B, 5VR4|1|C+5VR4|1|D, 5VR4|1|A+5VR4|1|B, 5DER|1|C+5DER|1|D, 5DER|1|A+5DER|1|B, 5D8T|1|A+5D8T|1|B(0)
NR_3.0_87665.1NR_3.0_31969.13.75(1) 6CY2|1|A+6CY2|1|B(14) 6CY4|1|G+6CY4|1|H, 6CY4|1|E+6CY4|1|F, 6CY4|1|C+6CY4|1|D, 6CY4|1|A+6CY4|1|B, 6CY0|1|G+6CY0|1|H, 6CY0|1|E+6CY0|1|F, 6CY0|1|C+6CY0|1|D, 6CY0|1|A+6CY0|1|B, 6CXZ|1|A+6CXZ|1|B, 5VR4|1|C+5VR4|1|D, 5VR4|1|A+5VR4|1|B, 5DER|1|C+5DER|1|D, 5DER|1|A+5DER|1|B, 5D8T|1|A+5D8T|1|B(0)
NR_3.0_87665.1NR_3.0_44426.13.75(1) 6CY4|1|A+6CY4|1|B(14) 5D8T|1|A+5D8T|1|B, 6CY4|1|G+6CY4|1|H, 6CY4|1|E+6CY4|1|F, 6CY4|1|C+6CY4|1|D, 6CY2|1|A+6CY2|1|B, 6CY0|1|G+6CY0|1|H, 6CY0|1|E+6CY0|1|F, 6CY0|1|C+6CY0|1|D, 6CY0|1|A+6CY0|1|B, 6CXZ|1|A+6CXZ|1|B, 5VR4|1|C+5VR4|1|D, 5VR4|1|A+5VR4|1|B, 5DER|1|C+5DER|1|D, 5DER|1|A+5DER|1|B(0)
NR_3.0_87665.1NR_3.0_73564.13.75(6) 6CY0|1|E+6CY0|1|F, 6CY4|1|G+6CY4|1|H, 6CY0|1|C+6CY0|1|D, 6CY4|1|E+6CY4|1|F, 6CY0|1|A+6CY0|1|B, 6CY0|1|G+6CY0|1|H(9) 5D8T|1|A+5D8T|1|B, 6CXZ|1|A+6CXZ|1|B, 6CY4|1|C+6CY4|1|D, 5VR4|1|C+5VR4|1|D, 6CY4|1|A+6CY4|1|B, 5VR4|1|A+5VR4|1|B, 6CY2|1|A+6CY2|1|B, 5DER|1|C+5DER|1|D, 5DER|1|A+5DER|1|B(0)
NR_3.0_87665.1NR_3.0_86375.13.75(1) 6CXZ|1|A+6CXZ|1|B(14) 6CY4|1|G+6CY4|1|H, 6CY4|1|E+6CY4|1|F, 6CY4|1|C+6CY4|1|D, 6CY4|1|A+6CY4|1|B, 6CY2|1|A+6CY2|1|B, 6CY0|1|G+6CY0|1|H, 6CY0|1|E+6CY0|1|F, 6CY0|1|C+6CY0|1|D, 6CY0|1|A+6CY0|1|B, 5VR4|1|C+5VR4|1|D, 5VR4|1|A+5VR4|1|B, 5DER|1|C+5DER|1|D, 5DER|1|A+5DER|1|B, 5D8T|1|A+5D8T|1|B(0)
NR_3.0_87665.1NR_3.0_97273.13.75(5) 5VR4|1|C+5VR4|1|D, 5DER|1|A+5DER|1|B, 5D8T|1|A+5D8T|1|B, 5VR4|1|A+5VR4|1|B, 5DER|1|C+5DER|1|D(10) 6CY4|1|A+6CY4|1|B, 6CY0|1|G+6CY0|1|H, 6CY2|1|A+6CY2|1|B, 6CY0|1|E+6CY0|1|F, 6CY0|1|C+6CY0|1|D, 6CY0|1|A+6CY0|1|B, 6CXZ|1|A+6CXZ|1|B, 6CY4|1|G+6CY4|1|H, 6CY4|1|E+6CY4|1|F, 6CY4|1|C+6CY4|1|D(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15D8T|1|A+5D8T|1|BRNA octamer containing (S)-5' methyl, 2'-F U.X-RAY DIFFRACTION1.26
26CXZ|1|A+6CXZ|1|BRNA octamer containing 2'-F, 4'-Calpha-Me U.X-RAY DIFFRACTION1.59
36CY2|1|A+6CY2|1|BRNA octamer containing 2'-OMe, 4'Calpha-OMe U.X-RAY DIFFRACTION1.46
45VR4|1|A+5VR4|1|BRNA octamer containing 2'-F-4'-OMe U.X-RAY DIFFRACTION1.57
55VR4|1|C+5VR4|1|DRNA octamer containing 2'-F-4'-OMe U.X-RAY DIFFRACTION1.57
65DER|1|A+5DER|1|BRNA oligonucleotide containing (R)-C5'-ME-2'F UX-RAY DIFFRACTION1.87
75DER|1|C+5DER|1|DRNA oligonucleotide containing (R)-C5'-ME-2'F UX-RAY DIFFRACTION1.87
86CY4|1|A+6CY4|1|BRNA octamer containing 2'-OMe, 4'- Cbeta-OMe U.X-RAY DIFFRACTION1.856
96CY4|1|C+6CY4|1|DRNA octamer containing 2'-OMe, 4'- Cbeta-OMe U.X-RAY DIFFRACTION1.856
106CY4|1|G+6CY4|1|HRNA octamer containing 2'-OMe, 4'- Cbeta-OMe U.X-RAY DIFFRACTION1.856
116CY4|1|E+6CY4|1|FRNA octamer containing 2'-OMe, 4'- Cbeta-OMe U.X-RAY DIFFRACTION1.856
126CY0|1|C+6CY0|1|DRNA octamer containing 2'-F, 4'-Cbeta-OMe U.X-RAY DIFFRACTION2.46
136CY0|1|E+6CY0|1|FRNA octamer containing 2'-F, 4'-Cbeta-OMe U.X-RAY DIFFRACTION2.46
146CY0|1|G+6CY0|1|HRNA octamer containing 2'-F, 4'-Cbeta-OMe U.X-RAY DIFFRACTION2.46
156CY0|1|A+6CY0|1|BRNA octamer containing 2'-F, 4'-Cbeta-OMe U.X-RAY DIFFRACTION2.46
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