Equivalence class NR_3.0_88987.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5DM6|1|X (rep) | Large subunit ribosomal RNA | 23S ribosomal RNA | Deinococcus radiodurans | Bacteria | RF02541 | Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans | X-ray diffraction | 2.9 | 2015-11-11 |
| 2 | 2ZJR|1|X | Large subunit ribosomal RNA | ribosomal 23S RNA | Deinococcus radiodurans | Bacteria | RF02541 | Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans | X-ray diffraction | 2.91 | 2008-06-17 |
| 3 | 5DM7|1|X | Large subunit ribosomal RNA | 23S ribosomal RNA | Deinococcus radiodurans | Bacteria | RF02541 | Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with hygromycin A | X-ray diffraction | 3 | 2015-11-11 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.0_88987.3 | NR_all_88987.2 | 2.49 | (1) 2ZJR|1|X | (2) 5DM6|1|X, 5DM7|1|X | (38) 1J5A|1|A, 1JZX|1|A, 1JZY|1|A, 1JZZ|1|A, 1K01|1|A, 1NJM|1|0, 1NJN|1|0, 1NJO|1|0, 1NJP|1|0, 1NKW|1|0, 1NWX|1|0, 1NWY|1|0, 1OND|1|0, 1P9X|1|0, 1SM1|1|0, 1XBP|1|0, 1Y69|1|0, 1Z58|1|2, 2AAR|1|0, 2D3O|1|0, 2O43|1|A, 2O44|1|A, 2O45|1|A, 2OGM|1|0, 2OGN|1|0, 2OGO|1|0, 2ZJP|1|X, 2ZJQ|1|X, 3CF5|1|X, 3DLL|1|X, 3FWO|1|A, 3JQ4|1|A, 3PIO|1|X, 3PIP|1|X, 4IO9|1|X, 4IOA|1|X, 4IOC|1|X, 4U67|1|X |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5DM7|1|X | Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with hygromycin A | X-RAY DIFFRACTION | 3 | 2780 |
| 2 | 5DM6|1|X | Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans | X-RAY DIFFRACTION | 2.9 | 2780 |
| 3 | 2ZJR|1|X | Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans | X-RAY DIFFRACTION | 2.91 | 2686 |