Equivalence class NR_3.0_89429.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4FEN|1|B (rep) | A24U/U25A/A46G mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain | Crystal structure of the A24U/U25A/A46G mutant xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine | X-ray diffraction | 1.35 | 2013-02-27 | ||||
| 2 | 4FEO|1|B | U25A/A46G/C74U mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain | Crystal structure of the AU25A/A46G/C74U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with 2,6-diaminopurine | X-ray diffraction | 1.6 | 2013-02-27 | ||||
| 3 | 4FEL|1|B | U25A/A46G mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain | Crystal structure of the U25A/A46G mutant of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine | X-ray diffraction | 1.6 | 2013-02-27 | ||||
| 4 | 4FEP|1|B | A24U/U25A/A46G/C74U mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain | Crystal structure of the A24U/U25A/A46G/C74U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with 2,6-diaminopurine | X-ray diffraction | 1.65 | 2013-02-27 | ||||
| 5 | 4FEJ|1|B | A24U mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain | Crystal structure of the A24U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine | X-ray diffraction | 1.5 | 2013-02-27 | ||||
| 6 | 4FE5|1|B | xpt-pbuX guanine riboswitch aptamer domain | Crystal structure of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine | X-ray diffraction | 1.32 | 2012-06-27 | ||||
| 7 | 2XNZ|1|A | Purine riboswitch | Guanine riboswitch | Bacillus subtilis | Bacteria | RF00167 | xpt-pbuX C74U Riboswitch from B. subtilis bound to acetoguanamine identified by virtual screening | X-ray diffraction | 1.59 | 2011-04-06 |
| 8 | 2XNW|1|A | Purine riboswitch | GUANINE RIBOSWITCH | Bacillus subtilis | Bacteria | RF00167 | XPT-PBUX C74U RIBOSWITCH FROM B. SUBTILIS BOUND TO A TRIAZOLO- TRIAZOLE-DIAMINE LIGAND IDENTIFIED BY VIRTUAL SCREENING | X-ray diffraction | 1.5 | 2011-04-06 |
| 9 | 3GOT|1|A | Guanine riboswitch | Guanine riboswitch C74U mutant bound to 2-fluoroadenine. | X-ray diffraction | 1.95 | 2009-06-23 | ||||
| 10 | 2G9C|1|A | guanine riboswitch | Modified pyrimidines Specifically bind the purine riboswitch | X-ray diffraction | 1.7 | 2006-11-21 | ||||
| 11 | 3GAO|1|A | Guanine riboswitch | Crystal structure of the guanine riboswitch bound to xanthine. | X-ray diffraction | 1.9 | 2009-06-23 | ||||
| 12 | 3GER|1|A | Guanine riboswitch | Guanine riboswitch bound to 6-chloroguanine | X-ray diffraction | 1.7 | 2009-06-23 | ||||
| 13 | 2EES|1|A | Guanine riboswitch | Guanine riboswitch A21U, U75A mutant bound to hypoxanthine | X-ray diffraction | 1.75 | 2007-11-13 | ||||
| 14 | 3GOG|1|A | Guanine riboswitch | Guanine riboswitch A21G,U75C mutant bound to 6-chloroguanine | X-ray diffraction | 2.1 | 2009-06-23 | ||||
| 15 | 3DS7|1|A | 67-MER | Structure of an RNA-2'-deoxyguanosine complex | X-ray diffraction | 1.85 | 2009-02-17 | ||||
| 16 | 2EET|1|A | Guanine Riboswitch | Guanine Riboswitch A21G, U75C mutant bound to hypoxanthine | X-ray diffraction | 1.95 | 2007-11-13 | ||||
| 17 | 3FO4|1|A | Guanine riboswitch C74U mutant | Crystal structure of guanine riboswitch C74U mutant bound to 6-chloroguanine | X-ray diffraction | 1.9 | 2009-06-23 | ||||
| 18 | 2EEV|1|A | guanine riboswitch | Guanine riboswitch U22C, A52G mutant bound to hypoxanthine | X-ray diffraction | 1.95 | 2007-11-13 | ||||
| 19 | 3DS7|1|B | 67-MER | Structure of an RNA-2'-deoxyguanosine complex | X-ray diffraction | 1.85 | 2009-02-17 | ||||
| 20 | 3FO6|1|A | Guanine riboswitch | Crystal structure of guanine riboswitch bound to 6-O-methylguanine | X-ray diffraction | 1.9 | 2009-06-23 | ||||
| 21 | 3G4M|1|A | Guanine riboswitch | Crystal structure of guanine riboswitch bound to 2-aminopurine | X-ray diffraction | 2.4 | 2009-06-23 | ||||
| 22 | 3GES|1|A | Guanine riboswitch | Crystal structure of the guanine riboswitch C74U mutant bound to 6-O-methylguanine | X-ray diffraction | 2.15 | 2009-06-23 | ||||
| 23 | 2B57|1|A | 65-MER | Guanine Riboswitch C74U mutant bound to 2,6-diaminopurine | X-ray diffraction | 2.15 | 2006-05-23 | ||||
| 24 | 2EEW|1|A | Guanine riboswitch | Guanine Riboswitch U47C mutant bound to hypoxanthine | X-ray diffraction | 2.25 | 2007-11-13 | ||||
| 25 | 2EEU|1|A | Guanine riboswitch | Guanine riboswitch U22A, A52U mutant bound to hypoxanthine | X-ray diffraction | 1.95 | 2007-11-13 | ||||
| 26 | 2XO1|1|A | Purine riboswitch | Guanine riboswitch | Bacillus subtilis | Bacteria | RF00167 | xpt-pbuX C74U Riboswitch from B. subtilis bound to N6-methyladenine | X-ray diffraction | 1.6 | 2011-04-06 |
| 27 | 1U8D|1|A | xpt-pbuX mRNA | Guanine riboswitch bound to hypoxanthine | X-ray diffraction | 1.95 | 2004-11-23 |
Release history
| Release | 3.0 | 3.1 | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 | 3.99 | 3.100 | 3.101 | 3.102 | 3.103 | 3.104 | 3.105 | 3.106 | 3.107 | 3.108 | 3.109 | 3.110 | 3.111 | 3.112 | 3.113 | 3.114 | 3.115 | 3.116 | 3.117 | 3.118 | 3.119 | 3.120 | 3.121 | 3.122 | 3.123 | 3.124 | 3.125 | 3.126 | 3.127 | 3.128 | 3.129 | 3.130 | 3.131 | 3.132 | 3.133 | 3.134 | 3.135 |
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| Date | 2017-12-15 | 2017-12-22 | 2017-12-29 | 2018-01-05 | 2018-01-12 | 2018-01-19 | 2018-01-26 | 2018-02-02 | 2018-02-09 | 2018-02-16 | 2018-02-23 | 2018-03-01 | 2018-03-08 | 2018-03-15 | 2018-03-22 | 2018-03-29 | 2018-04-06 | 2018-04-13 | 2018-04-20 | 2018-04-27 | 2018-05-04 | 2018-05-11 | 2018-05-18 | 2018-05-25 | 2018-06-01 | 2018-06-08 | 2018-06-15 | 2018-06-22 | 2018-06-29 | 2018-07-06 | 2018-07-13 | 2018-07-20 | 2018-07-27 | 2018-08-03 | 2018-08-10 | 2018-08-17 | 2018-08-24 | 2018-08-31 | 2018-09-07 | 2018-09-14 | 2018-09-21 | 2018-09-28 | 2018-10-05 | 2018-10-12 | 2018-10-19 | 2018-10-26 | 2018-11-02 | 2018-11-09 | 2018-11-16 | 2018-11-23 | 2018-11-30 | 2018-12-07 | 2018-12-14 | 2018-12-21 | 2018-12-28 | 2019-01-04 | 2019-01-11 | 2019-01-18 | 2019-01-25 | 2019-02-01 | 2019-02-08 | 2019-02-15 | 2019-02-22 | 2019-03-01 | 2019-03-08 | 2019-03-15 | 2019-03-22 | 2019-03-29 | 2019-04-05 | 2019-04-12 | 2019-04-19 | 2019-04-26 | 2019-05-03 | 2019-05-10 | 2019-05-17 | 2019-05-24 | 2019-05-31 | 2019-06-07 | 2019-06-14 | 2019-06-21 | 2019-06-28 | 2019-07-05 | 2019-07-12 | 2019-07-19 | 2019-07-26 | 2019-08-02 | 2019-08-09 | 2019-08-16 | 2019-08-23 | 2019-08-28 | 2019-09-04 | 2019-09-11 | 2019-09-19 | 2019-09-25 | 2019-10-03 | 2019-10-09 | 2019-10-16 | 2019-10-23 | 2019-10-30 | 2019-11-06 | 2019-11-13 | 2019-11-20 | 2019-11-27 | 2019-12-04 | 2019-12-11 | 2019-12-18 | 2019-12-25 | 2020-01-01 | 2020-01-08 | 2020-01-15 | 2020-01-22 | 2020-01-29 | 2020-02-05 | 2020-02-12 | 2020-02-19 | 2020-02-26 | 2020-03-04 | 2020-03-11 | 2020-03-18 | 2020-03-25 | 2020-04-01 | 2020-04-08 | 2020-04-15 | 2020-04-22 | 2020-04-29 | 2020-05-06 | 2020-05-13 | 2020-05-20 | 2020-05-27 | 2020-06-03 | 2020-06-10 | 2020-06-17 | 2020-06-24 | 2020-07-01 | 2020-07-08 | 2020-07-15 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.0_89429.3 | NR_3.0_89429.2 | 3.0 | (26) 4FEL|1|B, 2XNZ|1|A, 3GES|1|A, 2EEU|1|A, 3FO4|1|A, 4FEJ|1|B, 2XNW|1|A, 3GER|1|A, 4FEP|1|B, 2EET|1|A, 3DS7|1|B, 4FE5|1|B, 2G9C|1|A, 3GAO|1|A, 4FEO|1|B, 2EES|1|A, 3DS7|1|A, 3GOT|1|A, 2EEW|1|A, 3G4M|1|A, 4FEN|1|B, 2B57|1|A, 2XO1|1|A, 3GOG|1|A, 2EEV|1|A, 3FO6|1|A | (1) 1U8D|1|A | (1) 2XO0|1|A |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.0_89429.3 | NR_3.0_89429.4 | 3.136 | (27) 3FO4|1|A, 3GER|1|A, 4FE5|1|B, 2B57|1|A, 4FEO|1|B, 2EEV|1|A, 2XNZ|1|A, 3DS7|1|B, 3GAO|1|A, 3GOT|1|A, 1U8D|1|A, 4FEN|1|B, 2EEU|1|A, 2XNW|1|A, 3DS7|1|A, 3G4M|1|A, 3GOG|1|A, 4FEL|1|B, 2EET|1|A, 2G9C|1|A, 2XO1|1|A, 3FO6|1|A, 3GES|1|A, 4FEJ|1|B, 2EES|1|A, 4FEP|1|B, 2EEW|1|A | (0) | (4) 6UC8|1|B, 6UC7|1|B, 6UBU|1|B, 6UC9|1|B |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4FEN|1|B | Crystal structure of the A24U/U25A/A46G mutant xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine | X-RAY DIFFRACTION | 1.35 | 67 |
| 2 | 4FEP|1|B | Crystal structure of the A24U/U25A/A46G/C74U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with 2,6-diaminopurine | X-RAY DIFFRACTION | 1.65 | 67 |
| 3 | 4FEL|1|B | Crystal structure of the U25A/A46G mutant of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine | X-RAY DIFFRACTION | 1.6 | 67 |
| 4 | 4FEO|1|B | Crystal structure of the AU25A/A46G/C74U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with 2,6-diaminopurine | X-RAY DIFFRACTION | 1.6 | 67 |
| 5 | 3G4M|1|A | Crystal structure of guanine riboswitch bound to 2-aminopurine | X-RAY DIFFRACTION | 2.4 | 67 |
| 6 | 3GOT|1|A | Guanine riboswitch C74U mutant bound to 2-fluoroadenine. | X-RAY DIFFRACTION | 1.95 | 67 |
| 7 | 2B57|1|A | Guanine Riboswitch C74U mutant bound to 2,6-diaminopurine | X-RAY DIFFRACTION | 2.15 | 65 |
| 8 | 2EEW|1|A | Guanine Riboswitch U47C mutant bound to hypoxanthine | X-RAY DIFFRACTION | 2.25 | 67 |
| 9 | 4FEJ|1|B | Crystal structure of the A24U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine | X-RAY DIFFRACTION | 1.5 | 67 |
| 10 | 2XO1|1|A | xpt-pbuX C74U Riboswitch from B. subtilis bound to N6-methyladenine | X-RAY DIFFRACTION | 1.6 | 65 |
| 11 | 4FE5|1|B | Crystal structure of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine | X-RAY DIFFRACTION | 1.32 | 67 |
| 12 | 2XNZ|1|A | xpt-pbuX C74U Riboswitch from B. subtilis bound to acetoguanamine identified by virtual screening | X-RAY DIFFRACTION | 1.59 | 65 |
| 13 | 2G9C|1|A | Modified pyrimidines Specifically bind the purine riboswitch | X-RAY DIFFRACTION | 1.7 | 67 |
| 14 | 3GER|1|A | Guanine riboswitch bound to 6-chloroguanine | X-RAY DIFFRACTION | 1.7 | 67 |
| 15 | 3FO4|1|A | Crystal structure of guanine riboswitch C74U mutant bound to 6-chloroguanine | X-RAY DIFFRACTION | 1.9 | 63 |
| 16 | 3FO6|1|A | Crystal structure of guanine riboswitch bound to 6-O-methylguanine | X-RAY DIFFRACTION | 1.9 | 67 |
| 17 | 3GOG|1|A | Guanine riboswitch A21G,U75C mutant bound to 6-chloroguanine | X-RAY DIFFRACTION | 2.1 | 65 |
| 18 | 2EET|1|A | Guanine Riboswitch A21G, U75C mutant bound to hypoxanthine | X-RAY DIFFRACTION | 1.95 | 67 |
| 19 | 2EES|1|A | Guanine riboswitch A21U, U75A mutant bound to hypoxanthine | X-RAY DIFFRACTION | 1.75 | 67 |
| 20 | 2XNW|1|A | XPT-PBUX C74U RIBOSWITCH FROM B. SUBTILIS BOUND TO A TRIAZOLO- TRIAZOLE-DIAMINE LIGAND IDENTIFIED BY VIRTUAL SCREENING | X-RAY DIFFRACTION | 1.5 | 65 |
| 21 | 1U8D|1|A | Guanine riboswitch bound to hypoxanthine | X-RAY DIFFRACTION | 1.95 | 67 |
| 22 | 3GAO|1|A | Crystal structure of the guanine riboswitch bound to xanthine. | X-RAY DIFFRACTION | 1.9 | 67 |
| 23 | 2EEU|1|A | Guanine riboswitch U22A, A52U mutant bound to hypoxanthine | X-RAY DIFFRACTION | 1.95 | 67 |
| 24 | 3GES|1|A | Crystal structure of the guanine riboswitch C74U mutant bound to 6-O-methylguanine | X-RAY DIFFRACTION | 2.15 | 67 |
| 25 | 2EEV|1|A | Guanine riboswitch U22C, A52G mutant bound to hypoxanthine | X-RAY DIFFRACTION | 1.95 | 67 |
| 26 | 3DS7|1|A | Structure of an RNA-2'-deoxyguanosine complex | X-RAY DIFFRACTION | 1.85 | 67 |
| 27 | 3DS7|1|B | Structure of an RNA-2'-deoxyguanosine complex | X-RAY DIFFRACTION | 1.85 | 67 |