Equivalence class NR_3.0_90506.15 Obsolete
| # | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
|---|---|---|---|---|---|---|---|
| 1 | 4V88|1|A5+ 4V88|1|A8 (rep) | 25S rRNA, 5.8S rRNA | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 2014-07-09 | |
| 2 | 4V88|1|A1+ 4V88|1|A4 | 25S rRNA, 5.8S rRNA | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 2014-07-09 | |
| 3 | 4U4Q|1|5+ 4U4Q|1|8 | 25S ribosomal RNA, 5.8S ribosomal RNA | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 | |
| 4 | 4U3U|1|1+ 4U3U|1|4 | 25S ribosomal RNA, 5.8S ribosomal RNA | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 2014-10-22 | |
| 5 | 4U4R|1|1+ 4U4R|1|4 | 25S ribosomal RNA, 5.8S ribosomal RNA | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 2014-10-22 | |
| 6 | 4U4R|1|5+ 4U4R|1|8 | 25S ribosomal RNA, 5.8S ribosomal RNA | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 2014-10-22 | |
| 7 | 4U52|1|5+ 4U52|1|8 | 25S ribosomal RNA, 5.8S ribosomal RNA | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 | |
| 8 | 4U4U|1|1+ 4U4U|1|4 | 25S ribosomal RNA, 5.8S ribosomal RNA | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 | |
| 9 | 4U4Q|1|1+ 4U4Q|1|4 | 25S ribosomal RNA, 5.8S ribosomal RNA | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 | |
| 10 | 4U3U|1|5+ 4U3U|1|8 | 25S ribosomal RNA, 5.8S ribosomal RNA | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 2014-10-22 | |
| 11 | 4U3M|1|1+ 4U3M|1|4 | 25s rRNA, 5.8s rRNA | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 | |
| 12 | 4U4U|1|5+ 4U4U|1|8 | 25S ribosomal RNA, 5.8S ribosomal RNA | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 | |
| 13 | 4U52|1|1+ 4U52|1|4 | 25S ribosomal RNA, 5.8S ribosomal RNA | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 | |
| 14 | 4U3M|1|5+ 4U3M|1|8 | 25s rRNA, 5.8s rRNA | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
Release history
| Release | 2.114 | 2.115 | 2.116 | 2.117 | 2.118 | 2.119 | 2.120 | 2.121 | 2.122 | 2.123 | 2.124 | 2.125 | 2.126 | 2.127 | 2.128 | 2.129 | 2.130 | 2.131 | 2.132 | 2.133 | 2.134 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2017-02-10 | 2017-02-17 | 2017-02-24 | 2017-03-03 | 2017-03-10 | 2017-03-17 | 2017-03-24 | 2017-03-31 | 2017-04-11 | 2017-04-15 | 2017-04-26 | 2017-04-29 | 2017-05-09 | 2017-05-15 | 2017-05-20 | 2017-05-27 | 2017-06-07 | 2017-06-11 | 2017-06-21 | 2017-06-24 | 2017-06-28 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.0_90506.15 | NR_3.0_90506.14 | 2.114 | (14) 4U3M|1|1+4U3M|1|4, 4V88|1|A1+4V88|1|A4, 4U52|1|5+4U52|1|8, 4U52|1|1+4U52|1|4, 4U4U|1|5+4U4U|1|8, 4U4U|1|1+4U4U|1|4, 4U4R|1|5+4U4R|1|8, 4U4R|1|1+4U4R|1|4, 4U4Q|1|5+4U4Q|1|8, 4U4Q|1|1+4U4Q|1|4, 4U3U|1|5+4U3U|1|8, 4U3U|1|1+4U3U|1|4, 4U3M|1|5+4U3M|1|8, 4V88|1|A5+4V88|1|A8 | (0) | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.0_90506.15 | NR_3.0_90506.16 | 2.135 | (14) 4U3M|1|1+4U3M|1|4, 4V88|1|A1+4V88|1|A4, 4U52|1|5+4U52|1|8, 4U52|1|1+4U52|1|4, 4U4U|1|5+4U4U|1|8, 4U4U|1|1+4U4U|1|4, 4U4R|1|5+4U4R|1|8, 4U4R|1|1+4U4R|1|4, 4U4Q|1|5+4U4Q|1|8, 4U4Q|1|1+4U4Q|1|4, 4U3U|1|5+4U3U|1|8, 4U3U|1|1+4U3U|1|4, 4U3M|1|5+4U3M|1|8, 4V88|1|A5+4V88|1|A8 | (0) | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4V88|1|A1+4V88|1|A4 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 3149 |
| 2 | 4U4R|1|1+4U4R|1|4 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 3149 |
| 3 | 4U3U|1|1+4U3U|1|4 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 3149 |
| 4 | 4U3M|1|1+4U3M|1|4 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 3149 |
| 5 | 4U4U|1|1+4U4U|1|4 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 3149 |
| 6 | 4U4Q|1|1+4U4Q|1|4 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 3149 |
| 7 | 4U52|1|1+4U52|1|4 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 3149 |
| 8 | 4U52|1|5+4U52|1|8 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 3150 |
| 9 | 4U4Q|1|5+4U4Q|1|8 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 3150 |
| 10 | 4U4U|1|5+4U4U|1|8 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 3150 |
| 11 | 4U3M|1|5+4U3M|1|8 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 3150 |
| 12 | 4U3U|1|5+4U3U|1|8 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 3150 |
| 13 | 4U4R|1|5+4U4R|1|8 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 3150 |
| 14 | 4V88|1|A5+4V88|1|A8 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 3150 |