#IFECompound(s)RNA source organismTitleMethodResolutionDate
15TBW|1|1+ 5TBW|1|4 (rep)25S ribosomal RNA, 5.8S ribosomal RNACrystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION32017-07-26
25TBW|1|AR+ 5TBW|1|AT25S ribosomal RNA, 5.8S ribosomal RNACrystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION32017-07-26
34V88|1|A5+ 4V88|1|A825S rRNA, 5.8S rRNAThe structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION32014-07-09
44V88|1|A1+ 4V88|1|A425S rRNA, 5.8S rRNAThe structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION32014-07-09
57OSA|1|25S+ 7OSA|1|58S25S rRNA, 5.8S rRNAPre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-RAY DIFFRACTION32021-12-08
67OSM|1|25S+ 7OSM|1|58S25S rRNA, 5.8S rRNAIntermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-RAY DIFFRACTION32021-12-08
76T4Q|1|C1+ 6T4Q|1|C325S rRNA, 5.8S rRNAStructure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.ELECTRON MICROSCOPY2.62019-12-25
86WOO|1|5+ 6WOO|1|825S ribosomal RNA, 5.8S ribosomal rRNACryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDPELECTRON MICROSCOPY2.92020-09-23
96TB3|1|BQ+ 6TB3|1|BS25S rRNA, 5.8S rRNAyeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexELECTRON MICROSCOPY2.82020-04-22
106SNT|1|1+ 6SNT|1|3Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA, 5.8S rRNAYeast 80S ribosome stalled on SDD1 mRNA.ELECTRON MICROSCOPY2.82020-03-04
117AZY|1|E+ 7AZY|1|G25S ribosomal RNA, 5.8S ribosomal RNAContext-specific inhibition of eukaryotic translation by macrolide antibioticsELECTRON MICROSCOPY2.8772021-05-19
124U4R|1|1+ 4U4R|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.82014-10-22
134U4R|1|5+ 4U4R|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.82014-10-22
144U3U|1|5+ 4U3U|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.92014-10-22
154U3U|1|1+ 4U3U|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.92014-10-22
164U3M|1|1+ 4U3M|1|425s rRNA, 5.8s rRNACrystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
176YLG|1|1+ 6YLG|1|225S rRNA, 5.8S rRNARix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)ELECTRON MICROSCOPY32020-07-29
184U4Q|1|5+ 4U4Q|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
194U3M|1|5+ 4U3M|1|825s rRNA, 5.8s rRNACrystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
204U4U|1|1+ 4U4U|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
214U4Q|1|1+ 4U4Q|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
224U4U|1|5+ 4U4U|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
234U52|1|5+ 4U52|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
244U52|1|1+ 4U52|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22

Release history

Release3.2083.2093.2103.2113.2123.2133.2143.2153.2163.217
Date2021-12-082021-12-152021-12-222021-12-292022-01-052022-01-122022-01-192022-01-262022-02-022022-02-09

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16WOO|1|5+6WOO|1|8CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDPELECTRON MICROSCOPY2.93271
24U52|1|5+4U52|1|8Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
34U4Q|1|5+4U4Q|1|8Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
44U4U|1|5+4U4U|1|8Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
54U3M|1|5+4U3M|1|8Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
64U3U|1|5+4U3U|1|8Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.93150
74U4R|1|5+4U4R|1|8Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.83150
84V88|1|A5+4V88|1|A8The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION33150
95TBW|1|AR+5TBW|1|ATCrystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
105TBW|1|1+5TBW|1|4Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
114U3M|1|1+4U3M|1|4Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
124U3U|1|1+4U3U|1|4Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.93149
134U4R|1|1+4U4R|1|4Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.83149
144V88|1|A1+4V88|1|A4The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION33149
154U4Q|1|1+4U4Q|1|4Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
164U4U|1|1+4U4U|1|4Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
174U52|1|1+4U52|1|4Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
186TB3|1|BQ+6TB3|1|BSyeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexELECTRON MICROSCOPY2.83223
196SNT|1|1+6SNT|1|3Yeast 80S ribosome stalled on SDD1 mRNA.ELECTRON MICROSCOPY2.83184
206T4Q|1|C1+6T4Q|1|C3Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.ELECTRON MICROSCOPY2.63184
217AZY|1|E+7AZY|1|GContext-specific inhibition of eukaryotic translation by macrolide antibioticsELECTRON MICROSCOPY2.8773161
227OSA|1|25S+7OSA|1|58SPre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-RAY DIFFRACTION33180
237OSM|1|25S+7OSM|1|58SIntermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-RAY DIFFRACTION33162
246YLG|1|1+6YLG|1|2Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)ELECTRON MICROSCOPY33039