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Equivalence class NR_3.0_90506.49 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15TBW|1|1+ 5TBW|1|4 (rep)Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-ray diffraction32017-07-26
25TBW|1|AR+ 5TBW|1|ATLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-ray diffraction32017-07-26
34V88|1|A5+ 4V88|1|A8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction32014-07-09
44V88|1|A1+ 4V88|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction32014-07-09
57OSA|1|25S+ 7OSA|1|58SLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-ray diffraction32021-12-08
67OSM|1|25S+ 7OSM|1|58SLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-ray diffraction32021-12-08
77TOP|1|A25S+ 7TOP|1|A58SLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20Electron microscopy2.42022-05-25
86T4Q|1|C1+ 6T4Q|1|C3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.Electron microscopy2.62019-12-25
97TOO|1|A25S+ 7TOO|1|A58SLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20Electron microscopy2.72022-05-25
107MPJ|1|A1+ 7MPJ|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Stm1 bound vacant 80S structure isolated from nop1-D243AElectron microscopy2.72022-05-11
116WOO|1|5+ 6WOO|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDPElectron microscopy2.92020-09-23
126TB3|1|BQ+ 6TB3|1|BSLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexElectron microscopy2.82020-04-22
136SNT|1|1+ 6SNT|1|3Large subunit ribosomal RNA + 5.8S ribosomal RNASaccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 80S ribosome stalled on SDD1 mRNA.Electron microscopy2.82020-03-04
147AZY|1|E+ 7AZY|1|GLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiae S288CEukaryaRF02543 + RF00002Context-specific inhibition of eukaryotic translation by macrolide antibioticsElectron microscopy2.8772021-05-19
154U4R|1|1+ 4U4R|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-ray diffraction2.82014-10-22
164U4R|1|5+ 4U4R|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-ray diffraction2.82014-10-22
174U3U|1|5+ 4U3U|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-ray diffraction2.92014-10-22
184U3U|1|1+ 4U3U|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-ray diffraction2.92014-10-22
194U3M|1|1+ 4U3M|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25s rRNA, 5.8s rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
206YLG|1|1+ 6YLG|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)Electron microscopy32020-07-29
214U4Q|1|5+ 4U4Q|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
224U3M|1|5+ 4U3M|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25s rRNA, 5.8s rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
234U4U|1|1+ 4U4U|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
244U4Q|1|1+ 4U4Q|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
254U4U|1|5+ 4U4U|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
264U52|1|5+ 4U52|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
274U52|1|1+ 4U52|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-ray diffraction32014-10-22

Release history

Release3.2323.2333.2343.2353.2363.2373.2383.2393.2403.2413.2423.2433.2443.2453.2463.2473.248
Date2022-05-252022-06-012022-06-082022-06-152022-06-222022-06-292022-07-062022-07-132022-07-202022-07-272022-08-032022-08-102022-08-172022-08-242022-08-312022-09-072022-09-14

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.0_90506.49NR_3.0_90506.483.232(25) 5TBW|1|1+5TBW|1|4, 4V88|1|A5+4V88|1|A8, 4V88|1|A1+4V88|1|A4, 4U52|1|5+4U52|1|8, 4U52|1|1+4U52|1|4, 4U4U|1|5+4U4U|1|8, 4U4U|1|1+4U4U|1|4, 7OSM|1|25S+7OSM|1|58S, 4U4R|1|5+4U4R|1|8, 7OSA|1|25S+7OSA|1|58S, 4U4R|1|1+4U4R|1|4, 7MPJ|1|A1+7MPJ|1|A4, 4U4Q|1|5+4U4Q|1|8, 7AZY|1|E+7AZY|1|G, 4U4Q|1|1+4U4Q|1|4, 6YLG|1|1+6YLG|1|2, 4U3U|1|5+4U3U|1|8, 6WOO|1|5+6WOO|1|8, 6TB3|1|BQ+6TB3|1|BS, 4U3U|1|1+4U3U|1|4, 6T4Q|1|C1+6T4Q|1|C3, 4U3M|1|5+4U3M|1|8, 6SNT|1|1+6SNT|1|3, 4U3M|1|1+4U3M|1|4, 5TBW|1|AR+5TBW|1|AT(2) 7TOO|1|A25S+7TOO|1|A58S, 7TOP|1|A25S+7TOP|1|A58S(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.0_90506.49NR_3.0_90506.503.249(27) 4U3M|1|1+4U3M|1|4, 5TBW|1|AR+5TBW|1|AT, 6SNT|1|1+6SNT|1|3, 6T4Q|1|C1+6T4Q|1|C3, 6TB3|1|BQ+6TB3|1|BS, 6WOO|1|5+6WOO|1|8, 6YLG|1|1+6YLG|1|2, 7AZY|1|E+7AZY|1|G, 7MPJ|1|A1+7MPJ|1|A4, 7OSA|1|25S+7OSA|1|58S, 7OSM|1|25S+7OSM|1|58S, 7TOO|1|A25S+7TOO|1|A58S, 5TBW|1|1+5TBW|1|4, 4V88|1|A5+4V88|1|A8, 4V88|1|A1+4V88|1|A4, 4U3M|1|5+4U3M|1|8, 4U3U|1|1+4U3U|1|4, 4U3U|1|5+4U3U|1|8, 4U4Q|1|1+4U4Q|1|4, 4U4Q|1|5+4U4Q|1|8, 4U4R|1|1+4U4R|1|4, 4U4R|1|5+4U4R|1|8, 4U4U|1|1+4U4U|1|4, 4U4U|1|5+4U4U|1|8, 4U52|1|1+4U52|1|4, 4U52|1|5+4U52|1|8, 7TOP|1|A25S+7TOP|1|A58S(0) (0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16WOO|1|5+6WOO|1|8CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDPELECTRON MICROSCOPY2.93271
27MPJ|1|A1+7MPJ|1|A4Stm1 bound vacant 80S structure isolated from nop1-D243AELECTRON MICROSCOPY2.73067
37AZY|1|E+7AZY|1|GContext-specific inhibition of eukaryotic translation by macrolide antibioticsELECTRON MICROSCOPY2.8773161
46TB3|1|BQ+6TB3|1|BSyeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexELECTRON MICROSCOPY2.83223
56SNT|1|1+6SNT|1|3Yeast 80S ribosome stalled on SDD1 mRNA.ELECTRON MICROSCOPY2.83184
66T4Q|1|C1+6T4Q|1|C3Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.ELECTRON MICROSCOPY2.63184
74U52|1|1+4U52|1|4Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
84U4U|1|1+4U4U|1|4Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
94U4Q|1|1+4U4Q|1|4Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
104V88|1|A1+4V88|1|A4The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION33149
114U4R|1|1+4U4R|1|4Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.83149
124U3U|1|1+4U3U|1|4Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.93149
134U3M|1|1+4U3M|1|4Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
145TBW|1|1+5TBW|1|4Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
155TBW|1|AR+5TBW|1|ATCrystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
164V88|1|A5+4V88|1|A8The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION33150
174U4R|1|5+4U4R|1|8Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.83150
184U3U|1|5+4U3U|1|8Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.93150
194U3M|1|5+4U3M|1|8Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
204U4U|1|5+4U4U|1|8Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
214U4Q|1|5+4U4Q|1|8Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
224U52|1|5+4U52|1|8Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
237TOO|1|A25S+7TOO|1|A58SYeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20ELECTRON MICROSCOPY2.73194
247TOP|1|A25S+7TOP|1|A58SYeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20ELECTRON MICROSCOPY2.43194
257OSA|1|25S+7OSA|1|58SPre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-RAY DIFFRACTION33180
267OSM|1|25S+7OSM|1|58SIntermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-RAY DIFFRACTION33162
276YLG|1|1+6YLG|1|2Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)ELECTRON MICROSCOPY33039
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