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Equivalence class NR_3.0_93855.13 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
17QI4|1|AA (rep)Small subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome at 2.2 A resolutionElectron microscopy2.212022-07-13
27P2E|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome small subunit in complex with IF3, GMPPMP and streptomycinElectron microscopy2.42022-07-27
36ZM6|1|AASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNAElectron microscopy2.592021-01-13
47PNX|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation aElectron microscopy2.762022-06-15
58CSS|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial small subunit assembly intermediate (State D)Electron microscopy2.362022-12-14
66ZM5|1|AASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptideElectron microscopy2.892021-01-13
77QI6|1|AASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolutionElectron microscopy2.982023-05-17
86VMI|1|AASmall subunit ribosomal RNA12s rRNAHomo sapiensMitochondriaRF00177Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)Electron microscopy2.962020-08-05
97PO3|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome small subunitElectron microscopy2.922022-06-15
107PO1|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Initiation complex of human mitochondrial ribosome small subunit with IF3Electron microscopy2.922022-06-15
117PO0|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and IF3Electron microscopy2.92022-06-15
126VLZ|1|AASmall subunit ribosomal RNA12s rRNAHomo sapiensMitochondriaRF00177Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)Electron microscopy2.972020-08-05
136RW4|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF3Electron microscopy2.972020-06-03
148CSR|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial small subunit assembly intermediate (State C)Electron microscopy2.542022-12-14
158CST|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial small subunit assembly intermediate (State E)Electron microscopy2.852022-12-14
168CSQ|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial small subunit assembly intermediate (State B)Electron microscopy2.542022-12-14
178CSP|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial small subunit assembly intermediate (State A)Electron microscopy2.662022-12-14

Release history

Release3.2833.2843.2853.286
Date2023-05-172023-05-242023-05-312023-06-07

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.0_93855.13NR_3.0_93855.123.283(16) 8CST|1|A, 8CSS|1|A, 8CSR|1|A, 8CSQ|1|A, 8CSP|1|A, 7QI4|1|AA, 7PO3|1|A, 7PO1|1|A, 7PO0|1|A, 7PNX|1|A, 7P2E|1|A, 6ZM6|1|AA, 6ZM5|1|AA, 6VMI|1|AA, 6VLZ|1|AA, 6RW4|1|A(1) 7QI6|1|AA(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.0_93855.13NR_3.0_93855.143.287(17) 8CSR|1|A, 8CSQ|1|A, 8CSP|1|A, 7QI6|1|AA, 7QI4|1|AA, 7PO3|1|A, 7PO1|1|A, 7PO0|1|A, 7PNX|1|A, 7P2E|1|A, 6ZM6|1|AA, 6ZM5|1|AA, 6VMI|1|AA, 6VLZ|1|AA, 6RW4|1|A, 8CST|1|A, 8CSS|1|A(0) (1) 8OIS|1|AA

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16VLZ|1|AAStructure of the human mitochondrial ribosome-EF-G1 complex (ClassI)ELECTRON MICROSCOPY2.97944
26VMI|1|AAStructure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)ELECTRON MICROSCOPY2.96944
36ZM5|1|AAHuman mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptideELECTRON MICROSCOPY2.89954
46ZM6|1|AAHuman mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNAELECTRON MICROSCOPY2.59954
57QI4|1|AAHuman mitochondrial ribosome at 2.2 A resolutionELECTRON MICROSCOPY2.21949
67QI6|1|AAHuman mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolutionELECTRON MICROSCOPY2.98949
77PO3|1|AHuman mitochondrial ribosome small subunitELECTRON MICROSCOPY2.92950
87PO1|1|AInitiation complex of human mitochondrial ribosome small subunit with IF3ELECTRON MICROSCOPY2.92950
97P2E|1|AHuman mitochondrial ribosome small subunit in complex with IF3, GMPPMP and streptomycinELECTRON MICROSCOPY2.4959
106RW4|1|AStructure of human mitochondrial 28S ribosome in complex with mitochondrial IF3ELECTRON MICROSCOPY2.97950
117PO0|1|AAssembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and IF3ELECTRON MICROSCOPY2.9946
127PNX|1|AAssembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation aELECTRON MICROSCOPY2.76946
138CST|1|AHuman mitochondrial small subunit assembly intermediate (State E)ELECTRON MICROSCOPY2.85886
148CSS|1|AHuman mitochondrial small subunit assembly intermediate (State D)ELECTRON MICROSCOPY2.36844
158CSR|1|AHuman mitochondrial small subunit assembly intermediate (State C)ELECTRON MICROSCOPY2.54853
168CSQ|1|AHuman mitochondrial small subunit assembly intermediate (State B)ELECTRON MICROSCOPY2.54802
178CSP|1|AHuman mitochondrial small subunit assembly intermediate (State A)ELECTRON MICROSCOPY2.66737
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