BGSU RNA Site //

Equivalence class NR_3.0_96683.3 Obsolete

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
15Z4J|1|B (rep)RNA (5'-R(*UP*UP*UP*U)-3')Drosophila melanogasterEukaryaStructure of Tailor in complex with U4 RNAX-ray diffraction1.822018-10-31
25GMF|1|ERNA (5'-R(P*UP*UP*UP*U)-3')Homo sapiensEukaryaCrystal structure of monkey TLR7 in complex with guanosine and polyUX-ray diffraction2.52016-11-02
35GMF|1|HRNA (5'-R(P*UP*UP*UP*U)-3')Homo sapiensEukaryaCrystal structure of monkey TLR7 in complex with guanosine and polyUX-ray diffraction2.52016-11-02
45GMF|1|FRNA (5'-R(P*UP*UP*UP*U)-3')Homo sapiensEukaryaCrystal structure of monkey TLR7 in complex with guanosine and polyUX-ray diffraction2.52016-11-02
55GMF|1|GRNA (5'-R(P*UP*UP*UP*U)-3')Homo sapiensEukaryaCrystal structure of monkey TLR7 in complex with guanosine and polyUX-ray diffraction2.52016-11-02
65GMG|1|DRNA (5'-R(P*UP*UP*UP*U)-3')Homo sapiensEukaryaCrystal structure of monkey TLR7 in complex with loxoribine and polyUX-ray diffraction2.62016-11-02
75GMG|1|CRNA (5'-R(P*UP*UP*UP*U)-3')Homo sapiensEukaryaCrystal structure of monkey TLR7 in complex with loxoribine and polyUX-ray diffraction2.62016-11-02
83IE1|1|ERNA (5'-R(P*UP*UP*UP*U)-3')Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNAX-ray diffraction2.852009-08-04
93IE1|1|HRNA (5'-R(P*UP*UP*UP*U)-3')Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNAX-ray diffraction2.852009-08-04
103IE1|1|FRNA (5'-R(P*UP*UP*UP*U)-3')Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNAX-ray diffraction2.852009-08-04
113IE1|1|GRNA (5'-R(P*UP*UP*UP*U)-3')Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNAX-ray diffraction2.852009-08-04
122ZDE|1|ERNA (5'-D(P*UP*UP*UP*U)-3')Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNAX-ray diffraction2.852008-11-25
132ZDE|1|FRNA (5'-D(P*UP*UP*UP*U)-3')Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNAX-ray diffraction2.852008-11-25
142ZDE|1|HRNA (5'-D(P*UP*UP*UP*U)-3')Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNAX-ray diffraction2.852008-11-25
152ZDE|1|GRNA (5'-D(P*UP*UP*UP*U)-3')Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNAX-ray diffraction2.852008-11-25
161NB7|1|E5'-R(*UP*UP*UP*U)-3'HC-J4 RNA polymerase complexed with short RNA template strandX-ray diffraction2.92003-03-25
171NB7|1|F5'-R(*UP*UP*UP*U)-3'HC-J4 RNA polymerase complexed with short RNA template strandX-ray diffraction2.92003-03-25

Release history

Release3.463.473.483.493.503.51
Date2018-11-022018-11-092018-11-162018-11-232018-11-302018-12-07

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.0_96683.3NR_3.0_96683.23.46(16) 3IE1|1|E, 2ZDE|1|H, 2ZDE|1|G, 2ZDE|1|F, 2ZDE|1|E, 1NB7|1|F, 1NB7|1|E, 5GMG|1|D, 5GMG|1|C, 5GMF|1|H, 5GMF|1|G, 5GMF|1|F, 5GMF|1|E, 3IE1|1|H, 3IE1|1|G, 3IE1|1|F(1) 5Z4J|1|B(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.0_96683.3NR_3.0_96683.43.52(17) 2ZDE|1|F, 5GMF|1|F, 2ZDE|1|E, 5GMF|1|E, 1NB7|1|F, 3IE1|1|H, 5Z4J|1|B, 1NB7|1|E, 3IE1|1|G, 5GMG|1|D, 3IE1|1|F, 3IE1|1|E, 5GMG|1|C, 2ZDE|1|H, 5GMF|1|H, 2ZDE|1|G, 5GMF|1|G(0) (2) 6E4P|1|J, 6E4P|1|K

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15Z4J|1|BStructure of Tailor in complex with U4 RNAX-RAY DIFFRACTION1.824
25GMG|1|DCrystal structure of monkey TLR7 in complex with loxoribine and polyUX-RAY DIFFRACTION2.64
35GMF|1|HCrystal structure of monkey TLR7 in complex with guanosine and polyUX-RAY DIFFRACTION2.54
45GMF|1|FCrystal structure of monkey TLR7 in complex with guanosine and polyUX-RAY DIFFRACTION2.54
55GMF|1|ECrystal structure of monkey TLR7 in complex with guanosine and polyUX-RAY DIFFRACTION2.54
65GMF|1|GCrystal structure of monkey TLR7 in complex with guanosine and polyUX-RAY DIFFRACTION2.54
75GMG|1|CCrystal structure of monkey TLR7 in complex with loxoribine and polyUX-RAY DIFFRACTION2.64
83IE1|1|HCrystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNAX-RAY DIFFRACTION2.854
92ZDE|1|HCrystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNAX-RAY DIFFRACTION2.854
102ZDE|1|ECrystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNAX-RAY DIFFRACTION2.854
112ZDE|1|FCrystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNAX-RAY DIFFRACTION2.854
123IE1|1|FCrystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNAX-RAY DIFFRACTION2.854
133IE1|1|ECrystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNAX-RAY DIFFRACTION2.854
143IE1|1|GCrystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNAX-RAY DIFFRACTION2.852
151NB7|1|FHC-J4 RNA polymerase complexed with short RNA template strandX-RAY DIFFRACTION2.94
161NB7|1|EHC-J4 RNA polymerase complexed with short RNA template strandX-RAY DIFFRACTION2.94
172ZDE|1|GCrystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNAX-RAY DIFFRACTION2.852