#IFECompound(s)RNA source organismTitleMethodResolutionDate
16N6I|1|C (rep)RNA (5'-R(P*GP*G)-3')synthetic constructHuman REXO2 bound to pGGX-RAY DIFFRACTION1.432019-06-12
26N6I|1|DRNA (5'-R(P*GP*G)-3')synthetic constructHuman REXO2 bound to pGGX-RAY DIFFRACTION1.432019-06-12
36N6A|1|DRNA (5'-R(P*GP*G)-3')Pseudomonas aeruginosaVibrio cholerae Oligoribonuclease bound to pGGX-RAY DIFFRACTION1.52019-06-12
47MPL|1|D5'-phosphorylated GGsynthetic constructBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82021-09-15
57MPL|1|H5'-phosphorylated GGsynthetic constructBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82021-09-15
67MPL|1|B5'-phosphorylated GGsynthetic constructBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82021-09-15
77MPL|1|J5'-phosphorylated GGsynthetic constructBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82021-09-15
87MPL|1|F5'-phosphorylated GGsynthetic constructBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82021-09-15
97MPL|1|N5'-phosphorylated GGsynthetic constructBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82021-09-15
107MPL|1|L5'-phosphorylated GGsynthetic constructBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82021-09-15
117MPL|1|P5'-phosphorylated GGsynthetic constructBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82021-09-15
127VA3|1|CRNA (5'-R(P*GP*G)-3')synthetic constructPaOrn Oligoribonuclease D11A mutant with substrate pGpG complex structureX-RAY DIFFRACTION1.82022-09-07
136IJ2|1|FRNA (5'-R(P*GP*G)-3')synthetic constructCrystal structure of a standalone versatile EAL protein from Vibrio cholerae O395 - 5'-pGpG bound formX-RAY DIFFRACTION1.72019-10-09
146IJ2|1|GRNA (5'-R(P*GP*G)-3')synthetic constructCrystal structure of a standalone versatile EAL protein from Vibrio cholerae O395 - 5'-pGpG bound formX-RAY DIFFRACTION1.72019-10-09
156IJ2|1|HRNA (5'-R(P*GP*G)-3')synthetic constructCrystal structure of a standalone versatile EAL protein from Vibrio cholerae O395 - 5'-pGpG bound formX-RAY DIFFRACTION1.72019-10-09
166IJ2|1|ERNA (5'-R(P*GP*G)-3')synthetic constructCrystal structure of a standalone versatile EAL protein from Vibrio cholerae O395 - 5'-pGpG bound formX-RAY DIFFRACTION1.72019-10-09
173U2E|1|DRNA (5'-R(P*GP*G)-3')EAL domain of phosphodiesterase PdeA in complex with 5'-pGpG and Mg++X-RAY DIFFRACTION2.322011-10-12
183U2E|1|CRNA (5'-R(P*GP*G)-3')EAL domain of phosphodiesterase PdeA in complex with 5'-pGpG and Mg++X-RAY DIFFRACTION2.322011-10-12
197EH1|1|IRNA (5'-R(*GP*G)-3')synthetic constructThermus thermophilus transcription initiation complex containing a template-strand purine at position TSS-2, GpG RNA primer, and CMPcPPX-RAY DIFFRACTION2.92021-07-14
207MPQ|1|R5'-phosphorylated GGsynthetic constructBartonella henselae NrnC cleaving pGG in the presence of Mn2+X-RAY DIFFRACTION2.352021-09-15
215UEF|1|CRNA (5'-R(P*GP*G)-3')synthetic constructRNA primer-template complex with guanosine dinucleotide p(5')G(3')p(5')G ligandX-RAY DIFFRACTION2.12017-07-05
225UEF|1|DRNA (5'-R(P*GP*G)-3')synthetic constructRNA primer-template complex with guanosine dinucleotide p(5')G(3')p(5')G ligandX-RAY DIFFRACTION2.12017-07-05
234X4U|1|HRNA (5'-D(*GP*G)-3')Homo sapiensCrystal structure of the A.fulgidus CCA-adding enzyme in complex with a human MenBeta minihelix ending in CCACCX-RAY DIFFRACTION2.72015-02-11
244AFY|1|D5'-R(*GP*GP)-3'synthetic constructCrystal structure of the FimX EAL domain in complex with reaction product pGpGX-RAY DIFFRACTION2.012013-01-09
256OWL|1|BRNA (5'-R(P*G)-3')synthetic constructRNA oligonucleotides with 3'-arabino guanosine co-crystallized with GMPX-RAY DIFFRACTION22020-02-26
266OWL|1|CRNA (5'-R(P*G)-3')synthetic constructRNA oligonucleotides with 3'-arabino guanosine co-crystallized with GMPX-RAY DIFFRACTION22020-02-26
274AFY|1|C5'-R(*GP*GP)-3'synthetic constructCrystal structure of the FimX EAL domain in complex with reaction product pGpGX-RAY DIFFRACTION2.012013-01-09
284LQ3|1|R5'-R(P*GP*G)-3'Crystal structure of human norovirus RNA-dependent RNA-polymerase bound to the inhibitor PPNDSX-RAY DIFFRACTION2.62014-02-12
296S0M|1|CRNA (5'-R(P*G)-3')Escherichia coliStructural and dynamic studies provide insights into specificity and allosteric regulation of Ribonuclease AS, a key enzyme in mycobacterial virulenceX-RAY DIFFRACTION22019-08-28
307MPU|1|D5'-phosphorylated GGsynthetic constructBrucella melitensis NrnC bound to pGGX-RAY DIFFRACTION1.722021-09-15

Release history

Release3.2473.248
Date2022-09-072022-09-14

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15UEF|1|CRNA primer-template complex with guanosine dinucleotide p(5')G(3')p(5')G ligandX-RAY DIFFRACTION2.12
23U2E|1|CEAL domain of phosphodiesterase PdeA in complex with 5'-pGpG and Mg++X-RAY DIFFRACTION2.322
33U2E|1|DEAL domain of phosphodiesterase PdeA in complex with 5'-pGpG and Mg++X-RAY DIFFRACTION2.322
44AFY|1|CCrystal structure of the FimX EAL domain in complex with reaction product pGpGX-RAY DIFFRACTION2.012
54AFY|1|DCrystal structure of the FimX EAL domain in complex with reaction product pGpGX-RAY DIFFRACTION2.012
64X4U|1|HCrystal structure of the A.fulgidus CCA-adding enzyme in complex with a human MenBeta minihelix ending in CCACCX-RAY DIFFRACTION2.72
74LQ3|1|RCrystal structure of human norovirus RNA-dependent RNA-polymerase bound to the inhibitor PPNDSX-RAY DIFFRACTION2.62
87MPL|1|PBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82
97EH1|1|IThermus thermophilus transcription initiation complex containing a template-strand purine at position TSS-2, GpG RNA primer, and CMPcPPX-RAY DIFFRACTION2.92
107MPL|1|LBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82
117MPL|1|NBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82
127MPU|1|DBrucella melitensis NrnC bound to pGGX-RAY DIFFRACTION1.722
137MPQ|1|RBartonella henselae NrnC cleaving pGG in the presence of Mn2+X-RAY DIFFRACTION2.352
147VA3|1|CPaOrn Oligoribonuclease D11A mutant with substrate pGpG complex structureX-RAY DIFFRACTION1.82
156S0M|1|CStructural and dynamic studies provide insights into specificity and allosteric regulation of Ribonuclease AS, a key enzyme in mycobacterial virulenceX-RAY DIFFRACTION21
166OWL|1|CRNA oligonucleotides with 3'-arabino guanosine co-crystallized with GMPX-RAY DIFFRACTION21
176OWL|1|BRNA oligonucleotides with 3'-arabino guanosine co-crystallized with GMPX-RAY DIFFRACTION21
186IJ2|1|ECrystal structure of a standalone versatile EAL protein from Vibrio cholerae O395 - 5'-pGpG bound formX-RAY DIFFRACTION1.72
197MPL|1|FBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82
207MPL|1|BBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82
216IJ2|1|FCrystal structure of a standalone versatile EAL protein from Vibrio cholerae O395 - 5'-pGpG bound formX-RAY DIFFRACTION1.72
225UEF|1|DRNA primer-template complex with guanosine dinucleotide p(5')G(3')p(5')G ligandX-RAY DIFFRACTION2.12
236IJ2|1|HCrystal structure of a standalone versatile EAL protein from Vibrio cholerae O395 - 5'-pGpG bound formX-RAY DIFFRACTION1.72
246IJ2|1|GCrystal structure of a standalone versatile EAL protein from Vibrio cholerae O395 - 5'-pGpG bound formX-RAY DIFFRACTION1.72
257MPL|1|JBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82
267MPL|1|HBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82
276N6I|1|DHuman REXO2 bound to pGGX-RAY DIFFRACTION1.432
287MPL|1|DBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82
296N6I|1|CHuman REXO2 bound to pGGX-RAY DIFFRACTION1.432
306N6A|1|DVibrio cholerae Oligoribonuclease bound to pGGX-RAY DIFFRACTION1.52