Equivalence class NR_3.5_00138.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7PWG|1|1+ 7PWG|1|4 (rep) | Large subunit ribosomal RNA | rRNA 28S, rRNA 5.8S, P-site tRNA | Giardia lamblia ATCC 50803 | Eukarya | RF02543 | Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution | Electron microscopy | 2.75 | 2022-04-20 |
| 2 | 7PWO|1|1+ 7PWO|1|42 | Large subunit ribosomal RNA | rRNA 28S, rRNA 5.8S, P-site tRNA | Giardia lamblia ATCC 50803 | Eukarya | RF02543 | Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution | Electron microscopy | 2.75 | 2022-04-20 |
| 3 | 8BTR|1|Lt+ 8BTR|1|LD | Large subunit ribosomal RNA | Large Subunit rRNA, 5.8S rRNA | Giardia lamblia ATCC 50803 | Eukarya | RF02543 | Giardia Ribosome in PRE-T Hybrid State (D2) | Electron microscopy | 3.25 | 2023-03-22 |
| 4 | 8BRM|1|Lt+ 8BRM|1|LD | Large subunit ribosomal RNA | Large Subunit rRNA, 5.8S rRNA | Giardia lamblia ATCC 50803 | Eukarya | RF02543 | Giardia ribosome in POST-T state, no E-site tRNA (A6) | Electron microscopy | 3.33 | 2023-03-15 |
| 5 | 8BR8|1|Lt+ 8BR8|1|LD | Large subunit ribosomal RNA | Large Subunit rRNA, 5.8S rRNA | Giardia lamblia ATCC 50803 | Eukarya | RF02543 | Giardia ribosome in POST-T state (A1) | Electron microscopy | 3.35 | 2023-03-15 |
| 6 | 8BSI|1|Lt+ 8BSI|1|LD | Large subunit ribosomal RNA | Large Subunit rRNA, 5.8S rRNA | Giardia intestinalis | Eukarya | RF02543 | Giardia ribosome chimeric hybrid-like GDP+Pi bound state (B1) | Electron microscopy | 3.4 | 2023-03-15 |
Release history
| Release | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.5_00138.1 | NR_3.5_87196.1 | 3.275 | (5) 8BSI|1|Lt+8BSI|1|LD, 8BRM|1|Lt+8BRM|1|LD, 8BR8|1|Lt+8BR8|1|LD, 7PWO|1|1+7PWO|1|42, 7PWG|1|1+7PWG|1|4 | (1) 8BTR|1|Lt+8BTR|1|LD | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 8BTR|1|Lt+8BTR|1|LD | Giardia Ribosome in PRE-T Hybrid State (D2) | ELECTRON MICROSCOPY | 3.25 | 2593 |
| 2 | 8BSI|1|Lt+8BSI|1|LD | Giardia ribosome chimeric hybrid-like GDP+Pi bound state (B1) | ELECTRON MICROSCOPY | 3.4 | 2593 |
| 3 | 8BR8|1|Lt+8BR8|1|LD | Giardia ribosome in POST-T state (A1) | ELECTRON MICROSCOPY | 3.35 | 2593 |
| 4 | 7PWG|1|1+7PWG|1|4 | Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution | ELECTRON MICROSCOPY | 2.75 | 2426 |
| 5 | 7PWO|1|1+7PWO|1|42 | Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution | ELECTRON MICROSCOPY | 2.75 | 2424 |
| 6 | 8BRM|1|Lt+8BRM|1|LD | Giardia ribosome in POST-T state, no E-site tRNA (A6) | ELECTRON MICROSCOPY | 3.33 | 2594 |