Equivalence class NR_3.5_03510.43 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4V88|1|A6 (rep) | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-ray diffraction | 3 | 1795 | 2014-07-09 |
| 2 | 5TBW|1|sR | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-ray diffraction | 3 | 1783 | 2017-07-26 |
| 3 | 4V88|1|A2 | Small subunit ribosomal RNA | 18S RIBOSOMAL RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-ray diffraction | 3 | 1781 | 2014-07-09 |
| 4 | 5TBW|1|A | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-ray diffraction | 3 | 1781 | 2017-07-26 |
| 5 | 7OSA|1|18S | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands | X-ray diffraction | 3 | 1717 | 2021-12-08 |
| 6 | 6HHQ|1|sR | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of compound C45 bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 1783 | 2019-02-20 |
| 7 | 5OBM|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Gentamicin bound to the yeast 80S ribosome | X-ray diffraction | 3.4 | 1739 | 2017-12-13 |
| 8 | 5I4L|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 1795 | 2016-06-22 |
| 9 | 5MEI|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Agelastatin A bound to the 80S ribosome | X-ray diffraction | 3.5 | 1783 | 2017-06-28 |
| 10 | 5LYB|1|6 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-ray diffraction | 3.25 | 1795 | 2016-11-23 |
| 11 | 5I4L|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 1781 | 2016-06-22 |
| 12 | 5MEI|1|A | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Agelastatin A bound to the 80S ribosome | X-ray diffraction | 3.5 | 1781 | 2017-06-28 |
| 13 | 5OBM|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Gentamicin bound to the yeast 80S ribosome | X-ray diffraction | 3.4 | 1712 | 2017-12-13 |
| 14 | 7OSM|1|18S | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands | X-ray diffraction | 3 | 1732 | 2021-12-08 |
| 15 | 5ON6|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of haemanthamine bound to the 80S ribosome | X-ray diffraction | 3.1 | 1783 | 2018-02-28 |
| 16 | 6HHQ|1|A | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of compound C45 bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 1781 | 2019-02-20 |
| 17 | 5LYB|1|2 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-ray diffraction | 3.25 | 1781 | 2016-11-23 |
| 18 | 5ON6|1|A | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of haemanthamine bound to the 80S ribosome | X-ray diffraction | 3.1 | 1781 | 2018-02-28 |
| 19 | 5NDV|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Paromomycin bound to the yeast 80S ribosome | X-ray diffraction | 3.3 | 1683 | 2017-12-13 |
| 20 | 5NDV|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Paromomycin bound to the yeast 80S ribosome | X-ray diffraction | 3.3 | 1712 | 2017-12-13 |
| 21 | 5TGM|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.5 | 1795 | 2017-01-18 |
| 22 | 5TGM|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.5 | 1781 | 2017-01-18 |
| 23 | 5DAT|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-ray diffraction | 3.15 | 1795 | 2016-08-31 |
| 24 | 5TGA|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.3 | 1795 | 2016-11-23 |
| 25 | 5DGE|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome | X-ray diffraction | 3.45 | 1795 | 2017-01-25 |
| 26 | 5DGV|1|6 | Small subunit ribosomal RNA | Saccharomyces cerevisiae S288c RDN37-1 miscRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.1 | 1795 | 2016-12-14 |
| 27 | 5DGF|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.3 | 1795 | 2016-12-14 |
| 28 | 5DC3|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Complex of yeast 80S ribosome with non-modified eIF5A | X-ray diffraction | 3.25 | 1795 | 2016-06-01 |
| 29 | 5DAT|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-ray diffraction | 3.15 | 1781 | 2016-08-31 |
| 30 | 5TGA|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.3 | 1781 | 2016-11-23 |
| 31 | 5DGV|1|2 | Small subunit ribosomal RNA | Saccharomyces cerevisiae S288c RDN37-1 miscRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.1 | 1781 | 2016-12-14 |
| 32 | 5DGE|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome | X-ray diffraction | 3.45 | 1781 | 2017-01-25 |
| 33 | 5DGF|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.3 | 1781 | 2016-12-14 |
| 34 | 5DC3|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Complex of yeast 80S ribosome with non-modified eIF5A | X-ray diffraction | 3.25 | 1781 | 2016-06-01 |
| 35 | 6T4Q|1|C2 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination. | Electron microscopy | 2.6 | 1771 | 2019-12-25 |
| 36 | 7MPJ|1|B5 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Stm1 bound vacant 80S structure isolated from nop1-D243A | Electron microscopy | 2.7 | 1781 | 2022-05-11 |
| 37 | 4U4R|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-ray diffraction | 2.8 | 1795 | 2014-10-22 |
| 38 | 6WOO|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP | Electron microscopy | 2.9 | 1780 | 2020-09-23 |
| 39 | 6TB3|1|2 | Small subunit ribosomal RNA | Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex | Electron microscopy | 2.8 | 1771 | 2020-04-22 |
| 40 | 6SNT|1|2 | Small subunit ribosomal RNA | Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Yeast 80S ribosome stalled on SDD1 mRNA. | Electron microscopy | 2.8 | 1771 | 2020-03-04 |
| 41 | 4U3U|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-ray diffraction | 2.9 | 1795 | 2014-10-22 |
| 42 | 4U4R|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-ray diffraction | 2.8 | 1750 | 2014-10-22 |
| 43 | 7A1G|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complex | Electron microscopy | 3 | 1771 | 2020-10-14 |
| 44 | 6ZVI|1|h | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Mbf1-ribosome complex | Electron microscopy | 3 | 1758 | 2020-09-09 |
| 45 | 7N8B|1|B5 | Small subunit ribosomal RNA | 18S RIBOSOMAL RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cycloheximide bound vacant 80S structure isolated from cbf5-D95A | Electron microscopy | 3.05 | 1783 | 2022-05-11 |
| 46 | 7MPI|1|B5 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Stm1 bound vacant 80S structure isolated from cbf5-D95A | Electron microscopy | 3.05 | 1781 | 2022-05-11 |
| 47 | 4U3U|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-ray diffraction | 2.9 | 1750 | 2014-10-22 |
| 48 | 4U3M|1|6 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-ray diffraction | 3 | 1795 | 2014-10-22 |
| 49 | 4U4Q|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 1795 | 2014-10-22 |
| 50 | 4U4U|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 1795 | 2014-10-22 |
| 51 | 4U52|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-ray diffraction | 3 | 1795 | 2014-10-22 |
| 52 | 4U3M|1|2 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-ray diffraction | 3 | 1750 | 2014-10-22 |
| 53 | 4U6F|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 1795 | 2014-10-22 |
| 54 | 7RR5|1|C2 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Structure of ribosomal complex bound with Rbg1/Tma46 | Electron microscopy | 3.23 | 1771 | 2021-11-10 |
| 55 | 4U4N|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 1795 | 2014-10-22 |
| 56 | 4U52|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-ray diffraction | 3 | 1750 | 2014-10-22 |
| 57 | 4U4U|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 1750 | 2014-10-22 |
| 58 | 4U4Q|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 1750 | 2014-10-22 |
| 59 | 6Q8Y|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex | Electron microscopy | 3.1 | 1767 | 2019-03-13 |
| 60 | 4U4Z|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 1795 | 2014-10-22 |
| 61 | 4U6F|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 1781 | 2014-10-22 |
| 62 | 7B7D|1|2 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF01960 | Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs | Electron microscopy | 3.3 | 1771 | 2021-03-10 |
| 63 | 4U4Y|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 1795 | 2014-10-22 |
| 64 | 4U3N|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 1795 | 2014-10-22 |
| 65 | 6SV4|1|2b | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | The cryo-EM structure of SDD1-stalled collided trisome. | Electron microscopy | 3.3 | 1758 | 2020-03-04 |
| 66 | 6SV4|1|2c | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | The cryo-EM structure of SDD1-stalled collided trisome. | Electron microscopy | 3.3 | 1758 | 2020-03-04 |
| 67 | 4U55|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 1795 | 2014-10-22 |
| 68 | 6XIR|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress | Electron microscopy | 3.2 | 1708 | 2020-08-26 |
| 69 | 6T7T|1|C2 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Structure of yeast 80S ribosome stalled on poly(A) tract. | Electron microscopy | 3.1 | 1771 | 2019-12-25 |
| 70 | 5M1J|1|22 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Nonstop ribosomal complex bound with Dom34 and Hbs1 | Electron microscopy | 3.3 | 1781 | 2017-01-18 |
| 71 | 4U4Z|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 1750 | 2014-10-22 |
| 72 | 4U4N|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 1750 | 2014-10-22 |
| 73 | 4U50|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 1795 | 2014-10-22 |
| 74 | 4U51|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 1795 | 2014-10-22 |
| 75 | 6T7I|1|C2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination. | Electron microscopy | 3.2 | 1771 | 2019-12-25 |
| 76 | 4U3N|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 1750 | 2014-10-22 |
| 77 | 4U4Y|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 1750 | 2014-10-22 |
| 78 | 4U51|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 1750 | 2014-10-22 |
| 79 | 6TNU|1|2 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs. | Electron microscopy | 3.1 | 1771 | 2020-04-22 |
| 80 | 4U55|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 1750 | 2014-10-22 |
| 81 | 6S47|1|BA | Small subunit ribosomal RNA | 18S rRNA (1707-MER) | Saccharomyces cerevisiae | Eukarya | RF01960 | Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1 | Electron microscopy | 3.28 | 1707 | 2019-07-24 |
| 82 | 6FAI|1|2 | Small subunit ribosomal RNA | 20S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit | Electron microscopy | 3.4 | 1775 | 2018-02-28 |
| 83 | 4U53|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-ray diffraction | 3.3 | 1795 | 2014-10-22 |
| 84 | 5JUP|1|A | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit) | Electron microscopy | 3.5 | 1781 | 2016-10-05 |
| 85 | 4U50|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 1750 | 2014-10-22 |
| 86 | 6Z6K|1|C2 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes | Electron microscopy | 3.4 | 1700 | 2020-07-29 |
| 87 | 6Z6J|1|C2 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition | Electron microscopy | 3.4 | 1700 | 2020-07-29 |
| 88 | 6RBD|1|2 | Small subunit ribosomal RNA | 20S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles | Electron microscopy | 3.47 | 1777 | 2019-06-26 |
| 89 | 4U53|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-ray diffraction | 3.3 | 1750 | 2014-10-22 |
| 90 | 6SV4|1|2 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | The cryo-EM structure of SDD1-stalled collided trisome. | Electron microscopy | 3.3 | 1758 | 2020-03-04 |
| 91 | 4U56|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-ray diffraction | 3.45 | 1795 | 2014-10-22 |
| 92 | 4U56|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-ray diffraction | 3.45 | 1750 | 2014-10-22 |
Release history
| Release | 3.230 |
|---|---|
| Date | 2022-05-11 |
Parents
Children
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 5DAT|1|6 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-RAY DIFFRACTION | 3.15 | 1795 | |
| 2 | 5DGF|1|6 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.3 | 1795 | |
| 3 | 5DGE|1|6 | Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome | X-RAY DIFFRACTION | 3.45 | 1795 | |
| 4 | 5DC3|1|6 | Complex of yeast 80S ribosome with non-modified eIF5A | X-RAY DIFFRACTION | 3.25 | 1795 | |
| 5 | 5DGV|1|6 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.1 | 1795 | |
| 6 | 5TGM|1|6 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.5 | 1795 | |
| 7 | 5TGA|1|6 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.3 | 1795 | |
| 8 | 5LYB|1|6 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-RAY DIFFRACTION | 3.25 | 1795 | |
| 9 | 4V88|1|A6 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 1795 | |
| 10 | 4U4U|1|6 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 | |
| 11 | 4U4Q|1|6 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 | |
| 12 | 4U4N|1|6 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1795 | |
| 13 | 5I4L|1|6 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1795 | |
| 14 | 4U51|1|6 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1795 | |
| 15 | 4U55|1|6 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1795 | |
| 16 | 4U4Z|1|6 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1795 | |
| 17 | 4U3N|1|6 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1795 | |
| 18 | 4U6F|1|6 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1795 | |
| 19 | 4U3U|1|6 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 1795 | |
| 20 | 4U4R|1|6 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 1795 | |
| 21 | 4U3M|1|6 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 | |
| 22 | 4U4Y|1|6 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1795 | |
| 23 | 5TBW|1|sR | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1783 | |
| 24 | 6HHQ|1|sR | Crystal structure of compound C45 bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1783 | |
| 25 | 5ON6|1|6 | Crystal structure of haemanthamine bound to the 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1783 | |
| 26 | 5MEI|1|6 | Crystal structure of Agelastatin A bound to the 80S ribosome | X-RAY DIFFRACTION | 3.5 | 1783 | |
| 27 | 4U52|1|6 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 | |
| 28 | 4U56|1|6 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.45 | 1795 | |
| 29 | 4U50|1|6 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1795 | |
| 30 | 4U53|1|6 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 1795 | |
| 31 | 5OBM|1|6 | Crystal structure of Gentamicin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.4 | 1739 | |
| 32 | 5NDV|1|6 | Crystal structure of Paromomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 1683 | |
| 33 | 5NDV|1|2 | Crystal structure of Paromomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 1712 | |
| 34 | 5OBM|1|2 | Crystal structure of Gentamicin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.4 | 1712 | |
| 35 | 5DAT|1|2 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-RAY DIFFRACTION | 3.15 | 1781 | |
| 36 | 5DGF|1|2 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.3 | 1781 | |
| 37 | 5DGE|1|2 | Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome | X-RAY DIFFRACTION | 3.45 | 1781 | |
| 38 | 5DC3|1|2 | Complex of yeast 80S ribosome with non-modified eIF5A | X-RAY DIFFRACTION | 3.25 | 1781 | |
| 39 | 5DGV|1|2 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.1 | 1781 | |
| 40 | 5LYB|1|2 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-RAY DIFFRACTION | 3.25 | 1781 | |
| 41 | 4V88|1|A2 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 1781 | |
| 42 | 5TGA|1|2 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.3 | 1781 | |
| 43 | 5I4L|1|2 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1781 | |
| 44 | 4U4N|1|2 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1750 | |
| 45 | 4U4U|1|2 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 | |
| 46 | 4U4Q|1|2 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 | |
| 47 | 4U3N|1|2 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1750 | |
| 48 | 4U6F|1|2 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1781 | |
| 49 | 4U4R|1|2 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 1750 | |
| 50 | 4U3U|1|2 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 1750 | |
| 51 | 4U3M|1|2 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 | |
| 52 | 4U4Y|1|2 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1750 | |
| 53 | 5TBW|1|A | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1781 | |
| 54 | 6HHQ|1|A | Crystal structure of compound C45 bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1781 | |
| 55 | 5ON6|1|A | Crystal structure of haemanthamine bound to the 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1781 | |
| 56 | 5MEI|1|A | Crystal structure of Agelastatin A bound to the 80S ribosome | X-RAY DIFFRACTION | 3.5 | 1781 | |
| 57 | 4U53|1|2 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 1750 | |
| 58 | 4U50|1|2 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1750 | |
| 59 | 4U51|1|2 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1750 | |
| 60 | 4U55|1|2 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1750 | |
| 61 | 4U4Z|1|2 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1750 | |
| 62 | 4U52|1|2 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 | |
| 63 | 4U56|1|2 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.45 | 1750 | |
| 64 | 5TGM|1|2 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.5 | 1781 | |
| 65 | 5JUP|1|A | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit) | ELECTRON MICROSCOPY | 3.5 | 1781 | |
| 66 | 7MPI|1|B5 | Stm1 bound vacant 80S structure isolated from cbf5-D95A | ELECTRON MICROSCOPY | 3.05 | 1781 | |
| 67 | 7MPJ|1|B5 | Stm1 bound vacant 80S structure isolated from nop1-D243A | ELECTRON MICROSCOPY | 2.7 | 1781 | |
| 68 | 7N8B|1|B5 | Cycloheximide bound vacant 80S structure isolated from cbf5-D95A | ELECTRON MICROSCOPY | 3.05 | 1783 | |
| 69 | 7A1G|1|2 | Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complex | ELECTRON MICROSCOPY | 3 | 1771 | |
| 70 | 7OSM|1|18S | Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands | X-RAY DIFFRACTION | 3 | 1732 | |
| 71 | 7OSA|1|18S | Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands | X-RAY DIFFRACTION | 3 | 1717 | |
| 72 | 6WOO|1|2 | CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP | ELECTRON MICROSCOPY | 2.9 | 1780 | |
| 73 | 6SV4|1|2 | The cryo-EM structure of SDD1-stalled collided trisome. | ELECTRON MICROSCOPY | 3.3 | 1758 | |
| 74 | 6S47|1|BA | Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1 | ELECTRON MICROSCOPY | 3.28 | 1707 | |
| 75 | 5M1J|1|22 | Nonstop ribosomal complex bound with Dom34 and Hbs1 | ELECTRON MICROSCOPY | 3.3 | 1781 | |
| 76 | 6T7I|1|C2 | Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination. | ELECTRON MICROSCOPY | 3.2 | 1771 | |
| 77 | 6T7T|1|C2 | Structure of yeast 80S ribosome stalled on poly(A) tract. | ELECTRON MICROSCOPY | 3.1 | 1771 | |
| 78 | 6SNT|1|2 | Yeast 80S ribosome stalled on SDD1 mRNA. | ELECTRON MICROSCOPY | 2.8 | 1771 | |
| 79 | 6T4Q|1|C2 | Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination. | ELECTRON MICROSCOPY | 2.6 | 1771 | |
| 80 | 6TB3|1|2 | yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex | ELECTRON MICROSCOPY | 2.8 | 1771 | |
| 81 | 7B7D|1|2 | Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs | ELECTRON MICROSCOPY | 3.3 | 1771 | |
| 82 | 6TNU|1|2 | Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs. | ELECTRON MICROSCOPY | 3.1 | 1771 | |
| 83 | 7RR5|1|C2 | Structure of ribosomal complex bound with Rbg1/Tma46 | ELECTRON MICROSCOPY | 3.23 | 1771 | |
| 84 | 6Q8Y|1|2 | Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex | ELECTRON MICROSCOPY | 3.1 | 1767 | |
| 85 | 6Z6K|1|C2 | Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes | ELECTRON MICROSCOPY | 3.4 | 1700 | |
| 86 | 6Z6J|1|C2 | Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition | ELECTRON MICROSCOPY | 3.4 | 1700 | |
| 87 | 6SV4|1|2b | The cryo-EM structure of SDD1-stalled collided trisome. | ELECTRON MICROSCOPY | 3.3 | 1758 | |
| 88 | 6SV4|1|2c | The cryo-EM structure of SDD1-stalled collided trisome. | ELECTRON MICROSCOPY | 3.3 | 1758 | |
| 89 | 6ZVI|1|h | Mbf1-ribosome complex | ELECTRON MICROSCOPY | 3 | 1758 | |
| 90 | 6XIR|1|2 | Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress | ELECTRON MICROSCOPY | 3.2 | 1708 | |
| 91 | 6FAI|1|2 | Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit | ELECTRON MICROSCOPY | 3.4 | 1775 | |
| 92 | 6RBD|1|2 | State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles | ELECTRON MICROSCOPY | 3.47 | 1777 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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