Equivalence class NR_3.5_03510.44 Obsolete
| # | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
|---|---|---|---|---|---|---|---|
| 1 | 4V88|1|A6 (rep) | 18S rRNA | Saccharomyces cerevisiae | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 2014-07-09 |
| 2 | 5TBW|1|sR | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2017-07-26 |
| 3 | 4V88|1|A2 | 18S RIBOSOMAL RNA | Saccharomyces cerevisiae | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 2014-07-09 |
| 4 | 5TBW|1|A | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2017-07-26 |
| 5 | 7OSA|1|18S | 18S rRNA | Saccharomyces cerevisiae | Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands | X-RAY DIFFRACTION | 3 | 2021-12-08 |
| 6 | 6HHQ|1|sR | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of compound C45 bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 2019-02-20 |
| 7 | 5OBM|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Gentamicin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.4 | 2017-12-13 |
| 8 | 5I4L|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 2016-06-22 |
| 9 | 5MEI|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Agelastatin A bound to the 80S ribosome | X-RAY DIFFRACTION | 3.5 | 2017-06-28 |
| 10 | 5LYB|1|6 | 18S rRNA | Saccharomyces cerevisiae | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-RAY DIFFRACTION | 3.25 | 2016-11-23 |
| 11 | 5I4L|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 2016-06-22 |
| 12 | 5OBM|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Gentamicin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.4 | 2017-12-13 |
| 13 | 7OSM|1|18S | 18S rRNA | Saccharomyces cerevisiae | Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands | X-RAY DIFFRACTION | 3 | 2021-12-08 |
| 14 | 5MEI|1|A | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Agelastatin A bound to the 80S ribosome | X-RAY DIFFRACTION | 3.5 | 2017-06-28 |
| 15 | 5ON6|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of haemanthamine bound to the 80S ribosome | X-RAY DIFFRACTION | 3.1 | 2018-02-28 |
| 16 | 6HHQ|1|A | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of compound C45 bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 2019-02-20 |
| 17 | 5LYB|1|2 | 18S rRNA | Saccharomyces cerevisiae | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-RAY DIFFRACTION | 3.25 | 2016-11-23 |
| 18 | 5NDV|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Paromomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 2017-12-13 |
| 19 | 5NDV|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Paromomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 2017-12-13 |
| 20 | 5ON6|1|A | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of haemanthamine bound to the 80S ribosome | X-RAY DIFFRACTION | 3.1 | 2018-02-28 |
| 21 | 5TGM|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.5 | 2017-01-18 |
| 22 | 5TGM|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.5 | 2017-01-18 |
| 23 | 5DAT|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-RAY DIFFRACTION | 3.15 | 2016-08-31 |
| 24 | 5TGA|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.3 | 2016-11-23 |
| 25 | 5DGE|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome | X-RAY DIFFRACTION | 3.45 | 2017-01-25 |
| 26 | 5DGV|1|6 | Saccharomyces cerevisiae S288c RDN37-1 miscRNA | Saccharomyces cerevisiae | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.1 | 2016-12-14 |
| 27 | 5DGF|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.3 | 2016-12-14 |
| 28 | 5DC3|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Complex of yeast 80S ribosome with non-modified eIF5A | X-RAY DIFFRACTION | 3.25 | 2016-06-01 |
| 29 | 5DAT|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-RAY DIFFRACTION | 3.15 | 2016-08-31 |
| 30 | 5TGA|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.3 | 2016-11-23 |
| 31 | 5DGV|1|2 | Saccharomyces cerevisiae S288c RDN37-1 miscRNA | Saccharomyces cerevisiae | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.1 | 2016-12-14 |
| 32 | 5DGE|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome | X-RAY DIFFRACTION | 3.45 | 2017-01-25 |
| 33 | 5DGF|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.3 | 2016-12-14 |
| 34 | 5DC3|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Complex of yeast 80S ribosome with non-modified eIF5A | X-RAY DIFFRACTION | 3.25 | 2016-06-01 |
| 35 | 7PZY|1|A | 18S ribosomal RNA | Candida albicans SC5314 | Structure of the vacant Candida albicans 80S ribosome | ELECTRON MICROSCOPY | 2.32 | 2022-05-18 |
| 36 | 6T4Q|1|C2 | 18S rRNA | Saccharomyces cerevisiae | Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination. | ELECTRON MICROSCOPY | 2.6 | 2019-12-25 |
| 37 | 7MPJ|1|B5 | 18S rRNA | Saccharomyces cerevisiae | Stm1 bound vacant 80S structure isolated from nop1-D243A | ELECTRON MICROSCOPY | 2.7 | 2022-05-11 |
| 38 | 7Q0F|1|A | 18S ribosomal RNA | Candida albicans SC5314 | Structure of Candida albicans 80S ribosome in complex with phyllanthoside | ELECTRON MICROSCOPY | 2.64 | 2022-05-18 |
| 39 | 7Q0P|1|A | 18S ribosomal RNA | Candida albicans SC5314 | Structure of the Candida albicans 80S ribosome in complex with anisomycin | ELECTRON MICROSCOPY | 2.77 | 2022-05-18 |
| 40 | 6WOO|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP | ELECTRON MICROSCOPY | 2.9 | 2020-09-23 |
| 41 | 4U4R|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 2014-10-22 |
| 42 | 6TB3|1|2 | Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA | Saccharomyces cerevisiae | yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex | ELECTRON MICROSCOPY | 2.8 | 2020-04-22 |
| 43 | 6SNT|1|2 | Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA | Saccharomyces cerevisiae | Yeast 80S ribosome stalled on SDD1 mRNA. | ELECTRON MICROSCOPY | 2.8 | 2020-03-04 |
| 44 | 4U4R|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 2014-10-22 |
| 45 | 4U3U|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 2014-10-22 |
| 46 | 7A1G|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complex | ELECTRON MICROSCOPY | 3 | 2020-10-14 |
| 47 | 6ZVI|1|h | 18S rRNA | Saccharomyces cerevisiae | Mbf1-ribosome complex | ELECTRON MICROSCOPY | 3 | 2020-09-09 |
| 48 | 4U3U|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 2014-10-22 |
| 49 | 7N8B|1|B5 | 18S RIBOSOMAL RNA | Saccharomyces cerevisiae | Cycloheximide bound vacant 80S structure isolated from cbf5-D95A | ELECTRON MICROSCOPY | 3.05 | 2022-05-11 |
| 50 | 7MPI|1|B5 | 18S rRNA | Saccharomyces cerevisiae | Stm1 bound vacant 80S structure isolated from cbf5-D95A | ELECTRON MICROSCOPY | 3.05 | 2022-05-11 |
| 51 | 4U3M|1|6 | 18S rRNA | Saccharomyces cerevisiae | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
| 52 | 4U4Q|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
| 53 | 4U4U|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
| 54 | 4U52|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
| 55 | 4U3M|1|2 | 18S rRNA | Saccharomyces cerevisiae | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
| 56 | 7RR5|1|C2 | 18S rRNA | Saccharomyces cerevisiae | Structure of ribosomal complex bound with Rbg1/Tma46 | ELECTRON MICROSCOPY | 3.23 | 2021-11-10 |
| 57 | 4U52|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
| 58 | 4U4U|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
| 59 | 4U6F|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 2014-10-22 |
| 60 | 4U4Q|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
| 61 | 4U4N|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Edeine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 2014-10-22 |
| 62 | 6Q8Y|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex | ELECTRON MICROSCOPY | 3.1 | 2019-03-13 |
| 63 | 4U6F|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 2014-10-22 |
| 64 | 4U4Z|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 2014-10-22 |
| 65 | 6XIR|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress | ELECTRON MICROSCOPY | 3.2 | 2020-08-26 |
| 66 | 7B7D|1|2 | 18S rRNA | Saccharomyces cerevisiae S288C | Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs | ELECTRON MICROSCOPY | 3.3 | 2021-03-10 |
| 67 | 6SV4|1|2b | 18S rRNA | Saccharomyces cerevisiae | The cryo-EM structure of SDD1-stalled collided trisome. | ELECTRON MICROSCOPY | 3.3 | 2020-03-04 |
| 68 | 6SV4|1|2c | 18S rRNA | Saccharomyces cerevisiae | The cryo-EM structure of SDD1-stalled collided trisome. | ELECTRON MICROSCOPY | 3.3 | 2020-03-04 |
| 69 | 4U4Y|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 2014-10-22 |
| 70 | 4U3N|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 2014-10-22 |
| 71 | 4U4Z|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 2014-10-22 |
| 72 | 6T7T|1|C2 | 18S rRNA | Saccharomyces cerevisiae | Structure of yeast 80S ribosome stalled on poly(A) tract. | ELECTRON MICROSCOPY | 3.1 | 2019-12-25 |
| 73 | 4U55|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 2014-10-22 |
| 74 | 5M1J|1|22 | 18S ribosomal RNA | Saccharomyces cerevisiae | Nonstop ribosomal complex bound with Dom34 and Hbs1 | ELECTRON MICROSCOPY | 3.3 | 2017-01-18 |
| 75 | 4U4N|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Edeine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 2014-10-22 |
| 76 | 6T7I|1|C2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination. | ELECTRON MICROSCOPY | 3.2 | 2019-12-25 |
| 77 | 4U50|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 2014-10-22 |
| 78 | 4U51|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 2014-10-22 |
| 79 | 4U3N|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 2014-10-22 |
| 80 | 6S47|1|BA | 18S rRNA (1707-MER) | Saccharomyces cerevisiae | Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1 | ELECTRON MICROSCOPY | 3.28 | 2019-07-24 |
| 81 | 4U4Y|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 2014-10-22 |
| 82 | 4U51|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 2014-10-22 |
| 83 | 4U55|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 2014-10-22 |
| 84 | 6TNU|1|2 | 18S rRNA | Saccharomyces cerevisiae | Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs. | ELECTRON MICROSCOPY | 3.1 | 2020-04-22 |
| 85 | 6Z6K|1|C2 | 18S rRNA | Saccharomyces cerevisiae | Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes | ELECTRON MICROSCOPY | 3.4 | 2020-07-29 |
| 86 | 6Z6J|1|C2 | 18S rRNA | Saccharomyces cerevisiae | Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition | ELECTRON MICROSCOPY | 3.4 | 2020-07-29 |
| 87 | 6FAI|1|2 | 20S ribosomal RNA | Saccharomyces cerevisiae | Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit | ELECTRON MICROSCOPY | 3.4 | 2018-02-28 |
| 88 | 4U50|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 2014-10-22 |
| 89 | 5JUP|1|A | 18S ribosomal RNA | Saccharomyces cerevisiae | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit) | ELECTRON MICROSCOPY | 3.5 | 2016-10-05 |
| 90 | 4U53|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 2014-10-22 |
| 91 | 6RBD|1|2 | 20S ribosomal RNA | Saccharomyces cerevisiae | State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles | ELECTRON MICROSCOPY | 3.47 | 2019-06-26 |
| 92 | 4U53|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 2014-10-22 |
| 93 | 6SV4|1|2 | 18S rRNA | Saccharomyces cerevisiae | The cryo-EM structure of SDD1-stalled collided trisome. | ELECTRON MICROSCOPY | 3.3 | 2020-03-04 |
| 94 | 4U56|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.45 | 2014-10-22 |
| 95 | 6LQP|1|SA+ 6LQP|1|5A+ 6LQP|1|3A | 18S pre-rRNA, 5' ETS, U3 snoRNA | Saccharomyces cerevisiae | Cryo-EM structure of 90S small subunit preribosomes in transition states (State A) | ELECTRON MICROSCOPY | 3.2 | 2020-09-16 |
| 96 | 4U56|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.45 | 2014-10-22 |
| 97 | 6KE6|1|SA+ 6KE6|1|5A+ 6KE6|1|3A | 18S rRNA, 5' ETS, U3 snoRNA | Saccharomyces cerevisiae | 3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome | ELECTRON MICROSCOPY | 3.4 | 2020-08-05 |
| 98 | 6ZQG|1|D3 | 18S rRNA, U3 snoRNA | Saccharomyces cerevisiae | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C | ELECTRON MICROSCOPY | 3.5 | 2020-09-23 |
Release history
| Release | 3.231 |
|---|---|
| Date | 2022-05-18 |
Parents
Children
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6SV4|1|2c | The cryo-EM structure of SDD1-stalled collided trisome. | ELECTRON MICROSCOPY | 3.3 | 1758 |
| 2 | 6SV4|1|2b | The cryo-EM structure of SDD1-stalled collided trisome. | ELECTRON MICROSCOPY | 3.3 | 1758 |
| 3 | 6ZVI|1|h | Mbf1-ribosome complex | ELECTRON MICROSCOPY | 3 | 1758 |
| 4 | 6XIR|1|2 | Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress | ELECTRON MICROSCOPY | 3.2 | 1708 |
| 5 | 7N8B|1|B5 | Cycloheximide bound vacant 80S structure isolated from cbf5-D95A | ELECTRON MICROSCOPY | 3.05 | 1759 |
| 6 | 7MPJ|1|B5 | Stm1 bound vacant 80S structure isolated from nop1-D243A | ELECTRON MICROSCOPY | 2.7 | 1744 |
| 7 | 7MPI|1|B5 | Stm1 bound vacant 80S structure isolated from cbf5-D95A | ELECTRON MICROSCOPY | 3.05 | 1757 |
| 8 | 5JUP|1|A | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit) | ELECTRON MICROSCOPY | 3.5 | 1781 |
| 9 | 5OBM|1|2 | Crystal structure of Gentamicin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.4 | 1712 |
| 10 | 5TGM|1|2 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.5 | 1782 |
| 11 | 4U50|1|2 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1750 |
| 12 | 4U53|1|2 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 1750 |
| 13 | 4U51|1|2 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1750 |
| 14 | 4U55|1|2 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1750 |
| 15 | 4U4Q|1|2 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 |
| 16 | 4U4U|1|2 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 |
| 17 | 4U4N|1|2 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1750 |
| 18 | 5I4L|1|2 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1781 |
| 19 | 5TGA|1|2 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.3 | 1782 |
| 20 | 5LYB|1|2 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-RAY DIFFRACTION | 3.25 | 1782 |
| 21 | 4V88|1|A2 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 1768 |
| 22 | 4U3N|1|2 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1750 |
| 23 | 4U6F|1|2 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1781 |
| 24 | 4U4R|1|2 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 1750 |
| 25 | 4U3U|1|2 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 1750 |
| 26 | 4U3M|1|2 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 |
| 27 | 4U4Y|1|2 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1750 |
| 28 | 4U4Z|1|2 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1750 |
| 29 | 4U52|1|2 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 |
| 30 | 4U56|1|2 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.45 | 1750 |
| 31 | 5ON6|1|A | Crystal structure of haemanthamine bound to the 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1781 |
| 32 | 5MEI|1|A | Crystal structure of Agelastatin A bound to the 80S ribosome | X-RAY DIFFRACTION | 3.5 | 1781 |
| 33 | 6HHQ|1|A | Crystal structure of compound C45 bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1781 |
| 34 | 5TBW|1|A | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1781 |
| 35 | 5DGV|1|2 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.1 | 1782 |
| 36 | 5DC3|1|2 | Complex of yeast 80S ribosome with non-modified eIF5A | X-RAY DIFFRACTION | 3.25 | 1782 |
| 37 | 5DGE|1|2 | Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome | X-RAY DIFFRACTION | 3.45 | 1782 |
| 38 | 5DGF|1|2 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.3 | 1782 |
| 39 | 5DAT|1|2 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-RAY DIFFRACTION | 3.15 | 1782 |
| 40 | 5NDV|1|2 | Crystal structure of Paromomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 1712 |
| 41 | 7Q0F|1|A | Structure of Candida albicans 80S ribosome in complex with phyllanthoside | ELECTRON MICROSCOPY | 2.64 | 1692 |
| 42 | 7PZY|1|A | Structure of the vacant Candida albicans 80S ribosome | ELECTRON MICROSCOPY | 2.32 | 1692 |
| 43 | 7Q0P|1|A | Structure of the Candida albicans 80S ribosome in complex with anisomycin | ELECTRON MICROSCOPY | 2.77 | 1692 |
| 44 | 7OSM|1|18S | Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands | X-RAY DIFFRACTION | 3 | 1732 |
| 45 | 7A1G|1|2 | Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complex | ELECTRON MICROSCOPY | 3 | 1771 |
| 46 | 5NDV|1|6 | Crystal structure of Paromomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 1683 |
| 47 | 5OBM|1|6 | Crystal structure of Gentamicin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.4 | 1739 |
| 48 | 5DAT|1|6 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-RAY DIFFRACTION | 3.15 | 1796 |
| 49 | 5DGF|1|6 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.3 | 1796 |
| 50 | 5DGE|1|6 | Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome | X-RAY DIFFRACTION | 3.45 | 1796 |
| 51 | 5DC3|1|6 | Complex of yeast 80S ribosome with non-modified eIF5A | X-RAY DIFFRACTION | 3.25 | 1796 |
| 52 | 4U4Y|1|6 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1795 |
| 53 | 4U53|1|6 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 1795 |
| 54 | 4U50|1|6 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1795 |
| 55 | 5MEI|1|6 | Crystal structure of Agelastatin A bound to the 80S ribosome | X-RAY DIFFRACTION | 3.5 | 1783 |
| 56 | 5ON6|1|6 | Crystal structure of haemanthamine bound to the 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1783 |
| 57 | 6HHQ|1|sR | Crystal structure of compound C45 bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1783 |
| 58 | 5TBW|1|sR | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1783 |
| 59 | 4U3M|1|6 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 |
| 60 | 4U4R|1|6 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 1795 |
| 61 | 4U3U|1|6 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 1795 |
| 62 | 4U6F|1|6 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1795 |
| 63 | 4U3N|1|6 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1795 |
| 64 | 5TGA|1|6 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.3 | 1796 |
| 65 | 5LYB|1|6 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-RAY DIFFRACTION | 3.25 | 1796 |
| 66 | 4V88|1|A6 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 1770 |
| 67 | 5I4L|1|6 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1795 |
| 68 | 4U4N|1|6 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1795 |
| 69 | 4U4U|1|6 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 |
| 70 | 4U4Q|1|6 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 |
| 71 | 4U51|1|6 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1795 |
| 72 | 4U55|1|6 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 1795 |
| 73 | 4U4Z|1|6 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 1795 |
| 74 | 4U52|1|6 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 |
| 75 | 4U56|1|6 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.45 | 1795 |
| 76 | 5TGM|1|6 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.5 | 1796 |
| 77 | 5DGV|1|6 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.1 | 1796 |
| 78 | 6Z6J|1|C2 | Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition | ELECTRON MICROSCOPY | 3.4 | 1700 |
| 79 | 6Z6K|1|C2 | Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes | ELECTRON MICROSCOPY | 3.4 | 1700 |
| 80 | 6S47|1|BA | Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1 | ELECTRON MICROSCOPY | 3.28 | 1707 |
| 81 | 6SV4|1|2 | The cryo-EM structure of SDD1-stalled collided trisome. | ELECTRON MICROSCOPY | 3.3 | 1758 |
| 82 | 5M1J|1|22 | Nonstop ribosomal complex bound with Dom34 and Hbs1 | ELECTRON MICROSCOPY | 3.3 | 1781 |
| 83 | 6WOO|1|2 | CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP | ELECTRON MICROSCOPY | 2.9 | 1780 |
| 84 | 7OSA|1|18S | Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands | X-RAY DIFFRACTION | 3 | 1717 |
| 85 | 6Q8Y|1|2 | Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex | ELECTRON MICROSCOPY | 3.1 | 1767 |
| 86 | 6T7I|1|C2 | Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination. | ELECTRON MICROSCOPY | 3.2 | 1771 |
| 87 | 6T7T|1|C2 | Structure of yeast 80S ribosome stalled on poly(A) tract. | ELECTRON MICROSCOPY | 3.1 | 1771 |
| 88 | 6SNT|1|2 | Yeast 80S ribosome stalled on SDD1 mRNA. | ELECTRON MICROSCOPY | 2.8 | 1771 |
| 89 | 6T4Q|1|C2 | Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination. | ELECTRON MICROSCOPY | 2.6 | 1771 |
| 90 | 6TB3|1|2 | yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex | ELECTRON MICROSCOPY | 2.8 | 1771 |
| 91 | 7B7D|1|2 | Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs | ELECTRON MICROSCOPY | 3.3 | 1771 |
| 92 | 6TNU|1|2 | Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs. | ELECTRON MICROSCOPY | 3.1 | 1771 |
| 93 | 7RR5|1|C2 | Structure of ribosomal complex bound with Rbg1/Tma46 | ELECTRON MICROSCOPY | 3.23 | 1771 |
| 94 | 6FAI|1|2 | Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit | ELECTRON MICROSCOPY | 3.4 | 1775 |
| 95 | 6RBD|1|2 | State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles | ELECTRON MICROSCOPY | 3.47 | 1777 |
| 96 | 6ZQG|1|D3 | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C | ELECTRON MICROSCOPY | 3.5 | 1387 |
| 97 | 6KE6|1|SA+6KE6|1|5A+6KE6|1|3A | 3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome | ELECTRON MICROSCOPY | 3.4 | 1310 |
| 98 | 6LQP|1|SA+6LQP|1|5A+6LQP|1|3A | Cryo-EM structure of 90S small subunit preribosomes in transition states (State A) | ELECTRON MICROSCOPY | 3.2 | 1325 |