Equivalence class NR_3.5_04288.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6N6E|1|D (rep) | RNA (5'-R(P*GP*A)-3') | synthetic construct | Synthetic | Vibrio cholerae Oligoribonuclease bound to pGA | X-ray diffraction | 1.58 | 2019-06-12 | ||
| 2 | 4G7O|1|I | 5'-R(*GP*A)-3' | Crystal structure of Thermus thermophilus transcription initiation complex containing 2 nt of RNA | X-ray diffraction | 2.99 | 2012-10-31 | ||||
| 3 | 4G7O|1|S | 5'-R(*GP*A)-3' | Crystal structure of Thermus thermophilus transcription initiation complex containing 2 nt of RNA | X-ray diffraction | 2.99 | 2012-10-31 | ||||
| 4 | 5X22|1|S | RNA (5'-R(*GP*A)-3') | Thermus thermophilus | Bacteria | Crystal structure of Thermus thermophilus transcription initiation complex with GpA and CMPcPP | X-ray diffraction | 3.35 | 2017-07-05 | ||
| 5 | 5X22|1|I | RNA (5'-R(*GP*A)-3') | Thermus thermophilus | Bacteria | Crystal structure of Thermus thermophilus transcription initiation complex with GpA and CMPcPP | X-ray diffraction | 3.35 | 2017-07-05 | ||
| 6 | 5X21|1|I | RNA (5'-R(*GP*A)-3') | Thermus thermophilus | Bacteria | Crystal structure of Thermus thermophilus transcription initiation complex with GpA and pseudouridimycin (PUM) | X-ray diffraction | 3.32 | 2017-07-05 |
Release history
| Release | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 | 3.99 | 3.100 | 3.101 | 3.102 | 3.103 | 3.104 | 3.105 | 3.106 | 3.107 | 3.108 | 3.109 | 3.110 | 3.111 | 3.112 | 3.113 | 3.114 | 3.115 | 3.116 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-06-14 | 2019-06-21 | 2019-06-28 | 2019-07-05 | 2019-07-12 | 2019-07-19 | 2019-07-26 | 2019-08-02 | 2019-08-09 | 2019-08-16 | 2019-08-23 | 2019-08-28 | 2019-09-04 | 2019-09-11 | 2019-09-19 | 2019-09-25 | 2019-10-03 | 2019-10-09 | 2019-10-16 | 2019-10-23 | 2019-10-30 | 2019-11-06 | 2019-11-13 | 2019-11-20 | 2019-11-27 | 2019-12-04 | 2019-12-11 | 2019-12-18 | 2019-12-25 | 2020-01-01 | 2020-01-08 | 2020-01-15 | 2020-01-22 | 2020-01-29 | 2020-02-05 | 2020-02-12 | 2020-02-19 | 2020-02-26 | 2020-03-04 |
Parents
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4G7O|1|I | Crystal structure of Thermus thermophilus transcription initiation complex containing 2 nt of RNA | X-RAY DIFFRACTION | 2.99 | 2 |
| 2 | 6N6E|1|D | Vibrio cholerae Oligoribonuclease bound to pGA | X-RAY DIFFRACTION | 1.58 | 2 |
| 3 | 4G7O|1|S | Crystal structure of Thermus thermophilus transcription initiation complex containing 2 nt of RNA | X-RAY DIFFRACTION | 2.99 | 2 |
| 4 | 5X22|1|S | Crystal structure of Thermus thermophilus transcription initiation complex with GpA and CMPcPP | X-RAY DIFFRACTION | 3.35 | 2 |
| 5 | 5X22|1|I | Crystal structure of Thermus thermophilus transcription initiation complex with GpA and CMPcPP | X-RAY DIFFRACTION | 3.35 | 2 |
| 6 | 5X21|1|I | Crystal structure of Thermus thermophilus transcription initiation complex with GpA and pseudouridimycin (PUM) | X-RAY DIFFRACTION | 3.32 | 2 |