#IFECompound(s)RNA source organismTitleMethodResolutionDate
17O7Y|1|B5+ 7O7Y|1|B8 (rep)28S rRNA, 5.8S rRNA??Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)ELECTRON MICROSCOPY2.22021-06-02
27O7Z|1|B5+ 7O7Z|1|B828S rRNA, 5.8S rRNA??Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)ELECTRON MICROSCOPY2.42021-06-02
37O80|1|B5+ 7O80|1|B828S rRNA, 5.8S rRNA??Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery siteELECTRON MICROSCOPY2.92021-06-02
47OBR|1|5+ 7OBR|1|828S rRNA, 5.8S ribosomal RNA??RNC-SRP early complexELECTRON MICROSCOPY2.82021-07-21
56SGC|1|54+ 6SGC|1|8428S ribosomal RNA, 5.8S ribosomal RNA??Rabbit 80S ribosome stalled on a poly(A) tailELECTRON MICROSCOPY2.82019-12-04
67O81|1|B5+ 7O81|1|B828S rRNA, 5.8S rRNA??Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknotELECTRON MICROSCOPY3.12021-06-02
77NWI|1|5+ 7NWI|1|828S ribosomal RNA+BlaS, 5.8S ribosomal RNA??Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin SELECTRON MICROSCOPY3.132021-07-07
86R5Q|1|5+ 6R5Q|1|828S ribosomal RNA, 5.8S ribosomal RNA??Structure of XBP1u-paused ribosome nascent chain complex (post-state)ELECTRON MICROSCOPY32019-07-10
96R6P|1|5+ 6R6P|1|828S ribosomal RNA, 5.8S ribosomal RNA??Structure of XBP1u-paused ribosome nascent chain complex (rotated state)ELECTRON MICROSCOPY3.12019-07-10
106P5I|1|5+ 6P5I|1|828S rRNA, 5.8S rRNA??Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)ELECTRON MICROSCOPY3.12019-09-18
116P5J|1|5+ 6P5J|1|828S rRNA, 5.8S rRNA??Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)ELECTRON MICROSCOPY3.12019-09-18
126P5K|1|5+ 6P5K|1|828S rRNA, 5.8S rRNA??Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)ELECTRON MICROSCOPY3.12019-09-18
136ZVK|1|e2+ 6ZVK|1|h228S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNA??The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanismELECTRON MICROSCOPY3.492020-12-23
146P5N|1|5+ 6P5N|1|828S rRNA, 5.8S rRNA??Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1ELECTRON MICROSCOPY3.22019-09-25
157MDZ|1|5+ 7MDZ|1|828S rRNA, 5.8S rRNA??80S rabbit ribosome stalled with benzamide-CHXELECTRON MICROSCOPY3.22021-09-01
166D9J|1|5+ 6D9J|1|828S rRNA, 5.8S rRNA??Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.ELECTRON MICROSCOPY3.22018-06-06
177NFX|1|5+ 7NFX|1|828S ribosomal RNA, 5.8S ribosomal RNA??Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state AELECTRON MICROSCOPY3.22021-06-02
186T59|1|54+ 6T59|1|8428S ribosomal RNA, 5.8S ribosomal RNA??Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complexELECTRON MICROSCOPY3.112019-11-27
195LZS|1|5+ 5LZS|1|828S ribosomal RNA, 5.8S ribosomal RNA??Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.312016-11-30
205LZV|1|5+ 5LZV|1|828S ribosomal RNA, 5.8S ribosomal RNA??Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.ELECTRON MICROSCOPY3.352016-11-30
216MTD|1|5+ 6MTD|1|828S rRNA, 5.8S rRNA??Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)ELECTRON MICROSCOPY3.32018-11-21
226D90|1|5+ 6D90|1|828S rRNA, 5.8S rRNA??Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.ELECTRON MICROSCOPY3.22018-06-06
236MTE|1|5+ 6MTE|1|828S rRNA, 5.8S rRNA??Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)ELECTRON MICROSCOPY3.42018-11-21
246MTC|1|5+ 6MTC|1|828S rRNA, 5.8S rRNA??Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)ELECTRON MICROSCOPY3.42018-11-21
256GZ5|1|A2+ 6GZ5|1|A328S ribosomal RNA, 5.8S ribosomal RNA??tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)ELECTRON MICROSCOPY3.52018-12-05
265LZZ|1|5+ 5LZZ|1|828S ribosomal RNA, 5.8S ribosomal RNA??Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)ELECTRON MICROSCOPY3.472016-11-30
273JAH|1|5+ 3JAH|1|828S ribosomal RNA, 5.8S ribosomal RNA??Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonELECTRON MICROSCOPY3.452015-08-12

Release history

Release3.1943.1953.1963.1973.1983.1993.2003.2013.2023.2033.2043.2053.2063.2073.2083.2093.2103.2113.2123.2133.2143.2153.2163.2173.2183.2193.220
Date2021-09-012021-09-082021-09-152021-09-222021-09-292021-10-062021-10-132021-10-202021-10-272021-11-032021-11-102021-11-172021-11-242021-12-012021-12-082021-12-152021-12-222021-12-292022-01-052022-01-122022-01-192022-01-262022-02-022022-02-092022-02-162022-02-232022-03-02

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16D9J|1|5+6D9J|1|8Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.ELECTRON MICROSCOPY3.23594
26D90|1|5+6D90|1|8Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.ELECTRON MICROSCOPY3.23594
36P5N|1|5+6P5N|1|8Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1ELECTRON MICROSCOPY3.23594
46MTE|1|5+6MTE|1|8Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)ELECTRON MICROSCOPY3.43497
56MTD|1|5+6MTD|1|8Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)ELECTRON MICROSCOPY3.33497
66MTC|1|5+6MTC|1|8Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)ELECTRON MICROSCOPY3.43497
76T59|1|54+6T59|1|84Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complexELECTRON MICROSCOPY3.113543
86R5Q|1|5+6R5Q|1|8Structure of XBP1u-paused ribosome nascent chain complex (post-state)ELECTRON MICROSCOPY33543
95LZV|1|5+5LZV|1|8Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.ELECTRON MICROSCOPY3.353543
105LZS|1|5+5LZS|1|8Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.313543
116P5J|1|5+6P5J|1|8Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)ELECTRON MICROSCOPY3.13594
126P5I|1|5+6P5I|1|8Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)ELECTRON MICROSCOPY3.13594
136P5K|1|5+6P5K|1|8Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)ELECTRON MICROSCOPY3.13594
145LZZ|1|5+5LZZ|1|8Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)ELECTRON MICROSCOPY3.473543
156SGC|1|54+6SGC|1|84Rabbit 80S ribosome stalled on a poly(A) tailELECTRON MICROSCOPY2.83603
167MDZ|1|5+7MDZ|1|880S rabbit ribosome stalled with benzamide-CHXELECTRON MICROSCOPY3.23541
177O81|1|B5+7O81|1|B8Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknotELECTRON MICROSCOPY3.13640
187O7Y|1|B5+7O7Y|1|B8Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)ELECTRON MICROSCOPY2.23640
197O7Z|1|B5+7O7Z|1|B8Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)ELECTRON MICROSCOPY2.43640
207O80|1|B5+7O80|1|B8Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery siteELECTRON MICROSCOPY2.93640
216GZ5|1|A2+6GZ5|1|A3tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)ELECTRON MICROSCOPY3.53612
226R6P|1|5+6R6P|1|8Structure of XBP1u-paused ribosome nascent chain complex (rotated state)ELECTRON MICROSCOPY3.13662
233JAH|1|5+3JAH|1|8Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonELECTRON MICROSCOPY3.453662
247NFX|1|5+7NFX|1|8Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state AELECTRON MICROSCOPY3.23493
257OBR|1|5+7OBR|1|8RNC-SRP early complexELECTRON MICROSCOPY2.83493
266ZVK|1|e2+6ZVK|1|h2The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanismELECTRON MICROSCOPY3.493920
277NWI|1|5+7NWI|1|8Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin SELECTRON MICROSCOPY3.133662