#IFECompound(s)RNA source organismTitleMethodResolutionDate
14U26|1|BB (rep)5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.82014-07-30
25AFI|1|B5S ribosomal RNAEscherichia coli2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.92015-03-11
34U20|1|DB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.92014-07-30
44WWW|1|RB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to CEM-101X-RAY DIFFRACTION3.12014-12-24
54U27|1|BB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.82014-07-30
64U24|1|BB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.92014-07-30
74WF1|1|BB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to negamycin.X-RAY DIFFRACTION3.092014-11-05
84YBB|1|DB5S rRNAEscherichia coliHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.12015-03-18
94V7V|1|BB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to clindamycin.X-RAY DIFFRACTION3.292014-07-09
104V7T|1|BB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to chloramphenicol.X-RAY DIFFRACTION3.192014-07-09
114U1U|1|DB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.952014-07-30
124U25|1|BB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.92014-07-30
134U1V|1|BB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION32014-07-30
144U1U|1|BB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.952014-07-30
154V9C|1|DB5S ribosomal RNAEscherichia coliAllosteric control of the ribosome by small-molecule antibioticsX-RAY DIFFRACTION3.32014-07-09
164V6C|1|DB5S rRNAEscherichia coliCrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.192014-07-09
174V6C|1|BB5S rRNAEscherichia coliCrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.192014-07-09
184V7S|1|BB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to telithromycin.X-RAY DIFFRACTION3.252014-07-09
194U20|1|BB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.92014-07-30
204V9D|1|CB5S rRNAEscherichia coliStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION32014-07-09
214V54|1|BA5S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-RAY DIFFRACTION3.32014-07-09
224V50|1|BA5S ribosomal RNAEscherichia coliCrystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-RAY DIFFRACTION3.222014-07-09
234V50|1|DA5S ribosomal RNAEscherichia coliCrystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-RAY DIFFRACTION3.222014-07-09
244V54|1|DA5S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-RAY DIFFRACTION3.32014-07-09
254V7S|1|DB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to telithromycin.X-RAY DIFFRACTION3.252014-07-09
264V7U|1|BB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to erythromycin.X-RAY DIFFRACTION3.12014-07-09
274V9P|1|CB5S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
284YBB|1|CB5S rRNAEscherichia coliHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.12015-03-18
294U27|1|DB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.82014-07-30
304WF1|1|DB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to negamycin.X-RAY DIFFRACTION3.092014-11-05
314U25|1|DB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.92014-07-30
324V9D|1|DB5S rRNAEscherichia coliStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION32014-07-09
334WOI|1|BB5S ribosomal RNAEscherichia coli4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION32015-08-05
344V64|1|BA5S ribosomal RNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-RAY DIFFRACTION3.52014-07-09
354V64|1|DA5S ribosomal RNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-RAY DIFFRACTION3.52014-07-09
364V7T|1|DB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to chloramphenicol.X-RAY DIFFRACTION3.192014-07-09
374V9O|1|AB5S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
384WOI|1|CB5S ribosomal RNAEscherichia coli4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION32015-08-05
394U24|1|DB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.92014-07-30
404U1V|1|DB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION32014-07-30
414V57|1|BA5S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-RAY DIFFRACTION3.52014-07-09
424V4Q|1|BA5S ribosomal RNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-RAY DIFFRACTION3.462014-07-09
434V4H|1|BA5S RIBOSOMAL RNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-RAY DIFFRACTION3.462014-07-09
444V52|1|BA5S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-RAY DIFFRACTION3.212014-07-09
454V4Q|1|DA5S ribosomal RNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-RAY DIFFRACTION3.462014-07-09
464V4H|1|DA5S RIBOSOMAL RNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-RAY DIFFRACTION3.462014-07-09
474V52|1|DA5S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-RAY DIFFRACTION3.212014-07-09
484V57|1|DA5S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-RAY DIFFRACTION3.52014-07-09
494V85|1|BB5S ribosomal RNAEscherichia coliCrystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.X-RAY DIFFRACTION3.22014-07-09
504V9O|1|CB5S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
514U26|1|DB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.82014-07-30
524V7V|1|DB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to clindamycin.X-RAY DIFFRACTION3.292014-07-09
534WWW|1|YB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to CEM-101X-RAY DIFFRACTION3.12014-12-24
544V9P|1|AB5S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
554V9P|1|EB5S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
564V9O|1|EB5S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
573JCE|1|B5S ribosomal RNAEscherichia coliStructure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)ELECTRON MICROSCOPY3.22016-01-13
584V9O|1|GB5S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
594V9P|1|GB5S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
604V7U|1|DB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to erythromycin.X-RAY DIFFRACTION3.12014-07-09
614V9C|1|BB5S ribosomal RNAEscherichia coliAllosteric control of the ribosome by small-molecule antibioticsX-RAY DIFFRACTION3.32014-07-09

Release history

Release2.582.59
Date2016-01-152016-01-22

Parents


Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
13JCE|1|BStructure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)ELECTRON MICROSCOPY3.2118
25AFI|1|B2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.9120
34V85|1|BBCrystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.X-RAY DIFFRACTION3.2118
44V7U|1|BBCrystal structure of the E. coli ribosome bound to erythromycin.X-RAY DIFFRACTION3.1118
54V7V|1|BBCrystal structure of the E. coli ribosome bound to clindamycin.X-RAY DIFFRACTION3.29118
64V7T|1|BBCrystal structure of the E. coli ribosome bound to chloramphenicol.X-RAY DIFFRACTION3.19118
74V6C|1|BBCrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.19118
84V7S|1|BBCrystal structure of the E. coli ribosome bound to telithromycin.X-RAY DIFFRACTION3.25118
94WWW|1|RBCrystal structure of the E. coli ribosome bound to CEM-101X-RAY DIFFRACTION3.1118
104U1V|1|BBCrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION3119
114U24|1|BBCrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.9119
124U26|1|BBCrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.8119
134U27|1|BBCrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.8119
144U25|1|BBCrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.9119
154WF1|1|BBCrystal structure of the E. coli ribosome bound to negamycin.X-RAY DIFFRACTION3.09119
164U1U|1|BBCrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.95119
174U20|1|BBCrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.9119
184YBB|1|DBHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.1120
194V9D|1|CBStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION3119
204V9C|1|DBAllosteric control of the ribosome by small-molecule antibioticsX-RAY DIFFRACTION3.3119
214WOI|1|BB4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION3119
224V9O|1|ABControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
234V9O|1|CBControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
244V9P|1|CBControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
254V9P|1|ABControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
264WOI|1|CB4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION3118
274V9C|1|BBAllosteric control of the ribosome by small-molecule antibioticsX-RAY DIFFRACTION3.3118
284V9O|1|EBControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
294V9P|1|EBControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
304YBB|1|CBHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.1118
314V9D|1|DBStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION3118
324WF1|1|DBCrystal structure of the E. coli ribosome bound to negamycin.X-RAY DIFFRACTION3.09118
334U1U|1|DBCrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.95118
344U20|1|DBCrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.9118
354U1V|1|DBCrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION3118
364U27|1|DBCrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.8118
374U25|1|DBCrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.9118
384U26|1|DBCrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.8118
394U24|1|DBCrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.9118
404V7U|1|DBCrystal structure of the E. coli ribosome bound to erythromycin.X-RAY DIFFRACTION3.1117
414V7V|1|DBCrystal structure of the E. coli ribosome bound to clindamycin.X-RAY DIFFRACTION3.29117
424V7T|1|DBCrystal structure of the E. coli ribosome bound to chloramphenicol.X-RAY DIFFRACTION3.19117
434V6C|1|DBCrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.19117
444V7S|1|DBCrystal structure of the E. coli ribosome bound to telithromycin.X-RAY DIFFRACTION3.25117
454WWW|1|YBCrystal structure of the E. coli ribosome bound to CEM-101X-RAY DIFFRACTION3.1117
464V9P|1|GBControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
474V9O|1|GBControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
484V4H|1|BACrystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-RAY DIFFRACTION3.46117
494V4Q|1|BACrystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-RAY DIFFRACTION3.46117
504V50|1|DACrystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-RAY DIFFRACTION3.22117
514V50|1|BACrystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-RAY DIFFRACTION3.22117
524V54|1|BACrystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-RAY DIFFRACTION3.3117
534V64|1|BACrystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-RAY DIFFRACTION3.5117
544V52|1|BACrystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-RAY DIFFRACTION3.21117
554V57|1|BACrystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-RAY DIFFRACTION3.5117
564V57|1|DACrystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-RAY DIFFRACTION3.5117
574V52|1|DACrystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-RAY DIFFRACTION3.21117
584V64|1|DACrystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-RAY DIFFRACTION3.5117
594V54|1|DACrystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-RAY DIFFRACTION3.3117
604V4Q|1|DACrystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-RAY DIFFRACTION3.46117
614V4H|1|DACrystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-RAY DIFFRACTION3.46117