NR_3.5_10157.40

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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	5J7L\|1\|DB (rep)	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-ray diffraction	3	2016-07-27
2	5JC9\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA	X-ray diffraction	3.03	2016-07-06
3	5J8A\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline	X-ray diffraction	3.1	2016-07-06
4	4YBB\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	2015-03-18
5	4WOI\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-ray diffraction	3	2015-08-05
6	5IT8\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	3.12	2016-07-27
7	5J91\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-ray diffraction	2.96	2016-07-06
8	4U27\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-ray diffraction	2.8	2014-07-30
9	5J88\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA	X-ray diffraction	3.32	2016-07-06
10	4WF1\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to negamycin.	X-ray diffraction	3.09	2014-11-05
11	4WOI\|1\|CB	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-ray diffraction	3	2015-08-05
12	4V9D\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-ray diffraction	3	2014-07-09
13	4V9P\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
14	4V9P\|1\|EB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
15	4U24\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-ray diffraction	2.9	2014-07-30
16	4V9O\|1\|AB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
17	4WWW\|1\|RB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to CEM-101	X-ray diffraction	3.1	2014-12-24
18	4U26\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-ray diffraction	2.8	2014-07-30
19	4V9P\|1\|GB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
20	4V7T\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to chloramphenicol.	X-ray diffraction	3.19	2014-07-09
21	4V9O\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
22	4V6C\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-ray diffraction	3.19	2014-07-09
23	4U25\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-ray diffraction	2.9	2014-07-30
24	4V9O\|1\|EB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
25	4V9P\|1\|AB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
26	4U1U\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to quinupristin.	X-ray diffraction	2.95	2014-07-30
27	4V7U\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to erythromycin.	X-ray diffraction	3.1	2014-07-09
28	4U20\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to flopristin.	X-ray diffraction	2.9	2014-07-30
29	4V7V\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to clindamycin.	X-ray diffraction	3.29	2014-07-09
30	4V9C\|1\|DB	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Allosteric control of the ribosome by small-molecule antibiotics	X-ray diffraction	3.3	2014-07-09
31	4U1V\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to linopristin.	X-ray diffraction	3	2014-07-30
32	4V52\|1\|BA	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.	X-ray diffraction	3.21	2014-07-09
33	5J7L\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-ray diffraction	3	2016-07-27
34	4V52\|1\|DA	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.	X-ray diffraction	3.21	2014-07-09
35	4V7S\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to telithromycin.	X-ray diffraction	3.25	2014-07-09
36	5J8A\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline	X-ray diffraction	3.1	2016-07-06
37	4V9D\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-ray diffraction	3	2014-07-09
38	4V50\|1\|DA	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.	X-ray diffraction	3.22	2014-07-09
39	5JC9\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA	X-ray diffraction	3.03	2016-07-06
40	4V85\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.	X-ray diffraction	3.2	2014-07-09
41	4V57\|1\|DA	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.	X-ray diffraction	3.5	2014-07-09
42	4V64\|1\|DA	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.	X-ray diffraction	3.5	2014-07-09
43	4V64\|1\|BA	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.	X-ray diffraction	3.5	2014-07-09
44	4V57\|1\|BA	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.	X-ray diffraction	3.5	2014-07-09
45	4V54\|1\|BA	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).	X-ray diffraction	3.3	2014-07-09
46	4V54\|1\|DA	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).	X-ray diffraction	3.3	2014-07-09
47	4V9O\|1\|GB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
48	4U27\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-ray diffraction	2.8	2014-07-30
49	4WF1\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to negamycin.	X-ray diffraction	3.09	2014-11-05
50	5J88\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA	X-ray diffraction	3.32	2016-07-06
51	4U25\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-ray diffraction	2.9	2014-07-30
52	4V4Q\|1\|BA	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.	X-ray diffraction	3.46	2014-07-09
53	4U1V\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to linopristin.	X-ray diffraction	3	2014-07-30
54	4V50\|1\|BA	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.	X-ray diffraction	3.22	2014-07-09
55	4V4Q\|1\|DA	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.	X-ray diffraction	3.46	2014-07-09
56	4YBB\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	2015-03-18
57	4U26\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-ray diffraction	2.8	2014-07-30
58	4U1U\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to quinupristin.	X-ray diffraction	2.95	2014-07-30
59	4V9C\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Allosteric control of the ribosome by small-molecule antibiotics	X-ray diffraction	3.3	2014-07-09
60	4V7T\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to chloramphenicol.	X-ray diffraction	3.19	2014-07-09
61	4U20\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to flopristin.	X-ray diffraction	2.9	2014-07-30
62	5IT8\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	3.12	2016-07-27
63	4U24\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-ray diffraction	2.9	2014-07-30
64	4WWW\|1\|YB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to CEM-101	X-ray diffraction	3.1	2014-12-24
65	5J91\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-ray diffraction	2.96	2016-07-06
66	4V6C\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-ray diffraction	3.19	2014-07-09
67	4V7V\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to clindamycin.	X-ray diffraction	3.29	2014-07-09
68	4V7S\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to telithromycin.	X-ray diffraction	3.25	2014-07-09
69	4V7U\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to erythromycin.	X-ray diffraction	3.1	2014-07-09
70	5J5B\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the WT E coli ribosome bound to tetracycline	X-ray diffraction	2.8	2016-07-27
71	4V4H\|1\|BA	5S ribosomal RNA	5S RIBOSOMAL RNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.	X-ray diffraction	3.46	2014-07-09
72	4V4H\|1\|DA	5S ribosomal RNA	5S RIBOSOMAL RNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.	X-ray diffraction	3.46	2014-07-09
73	5J5B\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the WT E coli ribosome bound to tetracycline	X-ray diffraction	2.8	2016-07-27
74	5AFI\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM	Electron microscopy	2.9	2015-03-11
75	5NWY\|1\|O	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex	Electron microscopy	2.9	2017-07-19
76	5MDV\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)	Electron microscopy	2.97	2016-12-14
77	5H5U\|1\|B	5S ribosomal RNA	5S Ribosomal RNA	Escherichia coli	Bacteria	RF00001	Mechanistic insights into the alternative translation termination by ArfA and RF2	Electron microscopy	3.01	2017-01-25
78	6H4N\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome	Electron microscopy	3	2018-09-05
79	5WFS\|1\|B	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)	Electron microscopy	3	2018-05-02
80	5MDZ\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Structure of the 70S ribosome (empty A site)	Electron microscopy	3.1	2016-12-14
81	6ENU\|1\|B	5S ribosomal RNA	5S Ribosomal RNA	Escherichia coli	Bacteria	RF00001	Polyproline-stalled ribosome in the presence of elongation-factor P (EF-P)	Electron microscopy	3.1	2017-11-22
82	5MDW\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)	Electron microscopy	3.06	2016-12-14
83	5MGP\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs	Electron microscopy	3.1	2016-12-14
84	6ENF\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P	Electron microscopy	3.2	2017-11-22
85	5U9G\|1\|02	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)	Electron microscopy	3.2	2017-03-22
86	5U9F\|1\|02	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)	Electron microscopy	3.2	2017-03-22
87	5UYM\|1\|02	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)	Electron microscopy	3.2	2017-06-07
88	6C4I\|1\|B	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Conformation of methylated GGQ in the peptidyl transferase center during translation termination	Electron microscopy	3.24	2018-02-21
89	5WDT\|1\|B	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	70S ribosome-EF-Tu H84A complex with GppNHp	Electron microscopy	3	2018-04-25
90	5WE4\|1\|B	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	70S ribosome-EF-Tu wt complex with GppNHp	Electron microscopy	3.1	2018-04-25
91	4V80\|1\|BB		5S rRNA				Crystal structure of the E. coli ribosome bound to CEM-101.	X-ray diffraction	3.3	2014-07-09
92	4V80\|1\|DB		5S rRNA				Crystal structure of the E. coli ribosome bound to CEM-101.	X-ray diffraction	3.3	2014-07-09
93	3JBV\|1\|a	5S ribosomal RNA	RNA (118-MER)	Escherichia coli	Bacteria	RF00001	Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps	Electron microscopy	3.32	2016-01-27
94	5GAE\|1\|B	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	RNC in complex with a translocating SecYEG	Electron microscopy	3.33	2016-01-27
95	5MDY\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)	Electron microscopy	3.35	2016-12-21
96	5WFK\|1\|B	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)	Electron microscopy	3.4	2018-05-02
97	5LZD\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)	Electron microscopy	3.4	2016-11-23
98	3JCE\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)	Electron microscopy	3.2	2016-01-13
99	5O2R\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome	Electron microscopy	3.4	2017-07-26
100	5LZE\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)	Electron microscopy	3.5	2016-11-23
101	6BU8\|1\|02	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	70S ribosome with S1 domains 1 and 2 (Class 1)	Electron microscopy	3.5	2018-01-31
102	5U4I\|1\|B	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome	Electron microscopy	3.5	2017-01-11
103	5WE6\|1\|B	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	70S ribosome-EF-Tu H84A complex with GTP and cognate tRNA	Electron microscopy	3.4	2018-04-25
104	5IQR\|1\|3	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of RelA bound to the 70S ribosome	Electron microscopy	3	2016-05-04

Release history

Release	3.38	3.39	3.40	3.41	3.42	3.43	3.44	3.45	3.46	3.47	3.48	3.49	3.50
Date	2018-09-07	2018-09-14	2018-09-21	2018-09-28	2018-10-05	2018-10-12	2018-10-19	2018-10-26	2018-11-02	2018-11-09	2018-11-16	2018-11-23	2018-11-30

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_3.5_10157.40	NR_3.5_10157.39	3.38	(103) 4V9O\|1\|GB, 5LZE\|1\|B, 4V4Q\|1\|BA, 4V9O\|1\|EB, 5LZD\|1\|B, 4V4H\|1\|DA, 4V9O\|1\|CB, 5JC9\|1\|DB, 4V4H\|1\|BA, 4V9O\|1\|AB, 5JC9\|1\|CB, 4U27\|1\|DB, 4V9D\|1\|DB, 5J91\|1\|DB, 4U27\|1\|BB, 4V9D\|1\|CB, 5J91\|1\|CB, 4U26\|1\|DB, 4V9C\|1\|DB, 5J8A\|1\|DB, 4U26\|1\|BB, 4V9C\|1\|BB, 5J8A\|1\|CB, 4U25\|1\|DB, 4V85\|1\|BB, 5J88\|1\|DB, 4U25\|1\|BB, 4V80\|1\|DB, 5J88\|1\|CB, 4U24\|1\|DB, 4V80\|1\|BB, 5J7L\|1\|DB, 4U24\|1\|BB, 4V7V\|1\|DB, 5J7L\|1\|CB, 4U20\|1\|DB, 4V7V\|1\|BB, 5J5B\|1\|DB, 4U20\|1\|BB, 6ENU\|1\|B, 5J5B\|1\|CB, 4U1V\|1\|DB, 6ENF\|1\|B, 4V7U\|1\|DB, 5IT8\|1\|DB, 4U1V\|1\|BB, 6C4I\|1\|B, 4V7U\|1\|BB, 5IT8\|1\|CB, 4U1U\|1\|DB, 6BU8\|1\|02, 4V7T\|1\|DB, 5IQR\|1\|3, 4U1U\|1\|BB, 5WFS\|1\|B, 4V7T\|1\|BB, 5H5U\|1\|B, 3JCE\|1\|B, 5WFK\|1\|B, 4V7S\|1\|DB, 5GAE\|1\|B, 3JBV\|1\|a, 5WE6\|1\|B, 4V7S\|1\|BB, 5AFI\|1\|B, 5WE4\|1\|B, 4V6C\|1\|DB, 4YBB\|1\|DB, 5WDT\|1\|B, 4V6C\|1\|BB, 4YBB\|1\|CB, 5UYM\|1\|02, 4V64\|1\|DA, 4WWW\|1\|YB, 5U9G\|1\|02, 4V64\|1\|BA, 4WWW\|1\|RB, 5U9F\|1\|02, 4V57\|1\|DA, 4WOI\|1\|CB, 5U4I\|1\|B, 4V57\|1\|BA, 4WOI\|1\|BB, 5O2R\|1\|B, 4V54\|1\|DA, 4WF1\|1\|DB, 5NWY\|1\|O, 4V54\|1\|BA, 4WF1\|1\|BB, 5MGP\|1\|B, 4V52\|1\|DA, 4V9P\|1\|GB, 5MDZ\|1\|3, 4V52\|1\|BA, 4V9P\|1\|EB,	(1) 6H4N\|1\|B	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_3.5_10157.40	NR_3.5_10157.41	3.51	(104) 4WOI\|1\|BB, 4V6C\|1\|BB, 5O2R\|1\|B, 4U1U\|1\|DB, 4YBB\|1\|DB, 4V7T\|1\|DB, 5WDT\|1\|B, 4U24\|1\|DB, 5IT8\|1\|DB, 4V80\|1\|DB, 6C4I\|1\|B, 4U27\|1\|BB, 5J88\|1\|CB, 4V9D\|1\|DB, 4V4Q\|1\|DA, 5J91\|1\|DB, 4V9P\|1\|AB, 4V54\|1\|DA, 5MDW\|1\|3, 4U24\|1\|BB, 5IT8\|1\|CB, 4V80\|1\|BB, 6BU8\|1\|02, 4V54\|1\|BA, 5MDV\|1\|3, 4WF1\|1\|DB, 4V64\|1\|DA, 5NWY\|1\|O, 4U26\|1\|DB, 5J7L\|1\|DB, 4V9D\|1\|CB, 4U1U\|1\|BB, 4YBB\|1\|CB, 4V7T\|1\|BB, 5UYM\|1\|02, 4V4Q\|1\|BA, 5J91\|1\|CB, 4V9O\|1\|GB, 4U20\|1\|DB, 5IQR\|1\|3, 4V7V\|1\|DB, 5WFS\|1\|B, 4V52\|1\|DA, 5LZE\|1\|B, 4WF1\|1\|BB, 4V64\|1\|BA, 5MGP\|1\|B, 4U26\|1\|BB, 5J7L\|1\|CB, 4V9C\|1\|DB, 6H4N\|1\|B, 3JCE\|1\|B, 4WWW\|1\|YB, 4V7S\|1\|DB, 5U9G\|1\|02, 4V4H\|1\|DA, 5J8A\|1\|DB, 4V9O\|1\|EB, 4U20\|1\|BB, 5H5U\|1\|B, 4V7V\|1\|BB, 5WFK\|1\|B, 4V52\|1\|BA, 5LZD\|1\|B, 4V9P\|1\|GB, 4V57\|1\|DA, 5MDZ\|1\|3, 4U25\|1\|DB, 5J5B\|1\|DB, 4V9C\|1\|BB, 6ENU\|1\|B, 3JBV\|1\|a, 4WWW\|1\|RB, 4V7S\|1\|BB, 5U9F\|1\|02, 4V4H\|1\|BA, 5J8A\|1\|CB, 4V9O\|1\|CB, 4U1V\|1\|DB, 5GAE\|1\|B, 4V7U\|1\|DB, 5WE6\|1\|B, 4V50\|1\|DA, 5JC9\|1\|DB, 4V9P\|1\|EB, 5MDY\|1\|3, 4U25\|1\|BB, 5J5B\|1\|CB, 4V85\|1\|BB, 6ENF\|1\|B, 4V57\|1\|BA, 4WOI\|1\|CB, 4V6C\|1\|DB, 5U4I\|1\|B, 4U27\|1\|DB, 5J	(0)	(3) 6I7V\|1\|CB, 6I7V\|1\|DB, 6I0Y\|1\|B

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	5U4I\|1\|B	Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome	ELECTRON MICROSCOPY	3.5	118
2	3JCE\|1\|B	Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)	ELECTRON MICROSCOPY	3.2	118
3	5U9G\|1\|02	3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)	ELECTRON MICROSCOPY	3.2	119
4	5U9F\|1\|02	3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)	ELECTRON MICROSCOPY	3.2	119
5	6BU8\|1\|02	70S ribosome with S1 domains 1 and 2 (Class 1)	ELECTRON MICROSCOPY	3.5	120
6	5UYM\|1\|02	70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)	ELECTRON MICROSCOPY	3.2	120
7	5AFI\|1\|B	2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM	ELECTRON MICROSCOPY	2.9	120
8	5MGP\|1\|B	Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs	ELECTRON MICROSCOPY	3.1	120
9	5WFS\|1\|B	70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)	ELECTRON MICROSCOPY	3	120
10	5LZE\|1\|B	Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)	ELECTRON MICROSCOPY	3.5	120
11	6H4N\|1\|B	Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome	ELECTRON MICROSCOPY	3	120
12	6ENF\|1\|B	Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P	ELECTRON MICROSCOPY	3.2	120
13	6ENU\|1\|B	Polyproline-stalled ribosome in the presence of elongation-factor P (EF-P)	ELECTRON MICROSCOPY	3.1	120
14	5O2R\|1\|B	Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome	ELECTRON MICROSCOPY	3.4	120
15	5WE4\|1\|B	70S ribosome-EF-Tu wt complex with GppNHp	ELECTRON MICROSCOPY	3.1	120
16	5WDT\|1\|B	70S ribosome-EF-Tu H84A complex with GppNHp	ELECTRON MICROSCOPY	3	120
17	5WFK\|1\|B	70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)	ELECTRON MICROSCOPY	3.4	120
18	5WE6\|1\|B	70S ribosome-EF-Tu H84A complex with GTP and cognate tRNA	ELECTRON MICROSCOPY	3.4	120
19	5H5U\|1\|B	Mechanistic insights into the alternative translation termination by ArfA and RF2	ELECTRON MICROSCOPY	3.01	120
20	5LZD\|1\|B	Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)	ELECTRON MICROSCOPY	3.4	120
21	5GAE\|1\|B	RNC in complex with a translocating SecYEG	ELECTRON MICROSCOPY	3.33	120
22	4V9O\|1\|AB	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	118
23	4V9O\|1\|CB	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	118
24	4V9P\|1\|CB	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	118
25	4V9P\|1\|AB	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	118
26	4V85\|1\|BB	Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.	X-RAY DIFFRACTION	3.2	118
27	4V7U\|1\|BB	Crystal structure of the E. coli ribosome bound to erythromycin.	X-RAY DIFFRACTION	3.1	118
28	4V7V\|1\|BB	Crystal structure of the E. coli ribosome bound to clindamycin.	X-RAY DIFFRACTION	3.29	118
29	4V7T\|1\|BB	Crystal structure of the E. coli ribosome bound to chloramphenicol.	X-RAY DIFFRACTION	3.19	118
30	4V6C\|1\|BB	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-RAY DIFFRACTION	3.19	118
31	4V7S\|1\|BB	Crystal structure of the E. coli ribosome bound to telithromycin.	X-RAY DIFFRACTION	3.25	118
32	4V80\|1\|BB	Crystal structure of the E. coli ribosome bound to CEM-101.	X-RAY DIFFRACTION	3.3	118
33	4WWW\|1\|RB	Crystal structure of the E. coli ribosome bound to CEM-101	X-RAY DIFFRACTION	3.1	118
34	4WF1\|1\|BB	Crystal structure of the E. coli ribosome bound to negamycin.	X-RAY DIFFRACTION	3.09	119
35	4U25\|1\|BB	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-RAY DIFFRACTION	2.9	119
36	4U27\|1\|BB	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-RAY DIFFRACTION	2.8	119
37	4U26\|1\|BB	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-RAY DIFFRACTION	2.8	119
38	4U24\|1\|BB	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-RAY DIFFRACTION	2.9	119
39	4U1V\|1\|BB	Crystal structure of the E. coli ribosome bound to linopristin.	X-RAY DIFFRACTION	3	119
40	4U20\|1\|BB	Crystal structure of the E. coli ribosome bound to flopristin.	X-RAY DIFFRACTION	2.9	119
41	4U1U\|1\|BB	Crystal structure of the E. coli ribosome bound to quinupristin.	X-RAY DIFFRACTION	2.95	119
42	4V9D\|1\|CB	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-RAY DIFFRACTION	3	119
43	4V9C\|1\|DB	Allosteric control of the ribosome by small-molecule antibiotics	X-RAY DIFFRACTION	3.3	119
44	4WOI\|1\|BB	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-RAY DIFFRACTION	3	119
45	4YBB\|1\|DB	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	120
46	5J5B\|1\|DB	Structure of the WT E coli ribosome bound to tetracycline	X-RAY DIFFRACTION	2.8	120
47	5J91\|1\|DB	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-RAY DIFFRACTION	2.96	120
48	5JC9\|1\|DB	Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA	X-RAY DIFFRACTION	3.03	120
49	5J7L\|1\|DB	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-RAY DIFFRACTION	3	120
50	5J8A\|1\|DB	Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline	X-RAY DIFFRACTION	3.1	120
51	5IT8\|1\|DB	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	3.12	120
52	5J88\|1\|DB	Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA	X-RAY DIFFRACTION	3.32	120
53	5J88\|1\|CB	Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA	X-RAY DIFFRACTION	3.32	118
54	5J91\|1\|CB	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-RAY DIFFRACTION	2.96	118
55	5J5B\|1\|CB	Structure of the WT E coli ribosome bound to tetracycline	X-RAY DIFFRACTION	2.8	118
56	5J7L\|1\|CB	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-RAY DIFFRACTION	3	118
57	5J8A\|1\|CB	Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline	X-RAY DIFFRACTION	3.1	118
58	5IT8\|1\|CB	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	3.12	118
59	5JC9\|1\|CB	Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA	X-RAY DIFFRACTION	3.03	118
60	5NWY\|1\|O	2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex	ELECTRON MICROSCOPY	2.9	118
61	6C4I\|1\|B	Conformation of methylated GGQ in the peptidyl transferase center during translation termination	ELECTRON MICROSCOPY	3.24	120
62	5MDV\|1\|3	Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)	ELECTRON MICROSCOPY	2.97	120
63	5MDZ\|1\|3	Structure of the 70S ribosome (empty A site)	ELECTRON MICROSCOPY	3.1	120
64	5MDW\|1\|3	Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)	ELECTRON MICROSCOPY	3.06	120
65	5MDY\|1\|3	Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)	ELECTRON MICROSCOPY	3.35	120
66	5IQR\|1\|3	Structure of RelA bound to the 70S ribosome	ELECTRON MICROSCOPY	3	118
67	4YBB\|1\|CB	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	118
68	4V9O\|1\|EB	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	118
69	4V9P\|1\|EB	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	118
70	4V9D\|1\|DB	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-RAY DIFFRACTION	3	118
71	4U1U\|1\|DB	Crystal structure of the E. coli ribosome bound to quinupristin.	X-RAY DIFFRACTION	2.95	118
72	4U20\|1\|DB	Crystal structure of the E. coli ribosome bound to flopristin.	X-RAY DIFFRACTION	2.9	118
73	4U1V\|1\|DB	Crystal structure of the E. coli ribosome bound to linopristin.	X-RAY DIFFRACTION	3	118
74	4WF1\|1\|DB	Crystal structure of the E. coli ribosome bound to negamycin.	X-RAY DIFFRACTION	3.09	118
75	4U27\|1\|DB	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-RAY DIFFRACTION	2.8	118
76	4U25\|1\|DB	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-RAY DIFFRACTION	2.9	118
77	4U24\|1\|DB	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-RAY DIFFRACTION	2.9	118
78	4U26\|1\|DB	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-RAY DIFFRACTION	2.8	118
79	4V7U\|1\|DB	Crystal structure of the E. coli ribosome bound to erythromycin.	X-RAY DIFFRACTION	3.1	117
80	4V7V\|1\|DB	Crystal structure of the E. coli ribosome bound to clindamycin.	X-RAY DIFFRACTION	3.29	117
81	4V7T\|1\|DB	Crystal structure of the E. coli ribosome bound to chloramphenicol.	X-RAY DIFFRACTION	3.19	117
82	4V6C\|1\|DB	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-RAY DIFFRACTION	3.19	117
83	4V7S\|1\|DB	Crystal structure of the E. coli ribosome bound to telithromycin.	X-RAY DIFFRACTION	3.25	117
84	4WWW\|1\|YB	Crystal structure of the E. coli ribosome bound to CEM-101	X-RAY DIFFRACTION	3.1	117
85	4V80\|1\|DB	Crystal structure of the E. coli ribosome bound to CEM-101.	X-RAY DIFFRACTION	3.3	117
86	4WOI\|1\|CB	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-RAY DIFFRACTION	3	118
87	4V9C\|1\|BB	Allosteric control of the ribosome by small-molecule antibiotics	X-RAY DIFFRACTION	3.3	118
88	4V9P\|1\|GB	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	118
89	4V9O\|1\|GB	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	118
90	3JBV\|1\|a	Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps	ELECTRON MICROSCOPY	3.32	117
91	4V4H\|1\|BA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.	X-RAY DIFFRACTION	3.46	117
92	4V4Q\|1\|BA	Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.	X-RAY DIFFRACTION	3.46	117
93	4V50\|1\|BA	Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.	X-RAY DIFFRACTION	3.22	117
94	4V50\|1\|DA	Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.	X-RAY DIFFRACTION	3.22	117
95	4V54\|1\|BA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).	X-RAY DIFFRACTION	3.3	117
96	4V64\|1\|BA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.	X-RAY DIFFRACTION	3.5	117
97	4V52\|1\|BA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.	X-RAY DIFFRACTION	3.21	117
98	4V57\|1\|BA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.	X-RAY DIFFRACTION	3.5	117
99	4V57\|1\|DA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.	X-RAY DIFFRACTION	3.5	117
100	4V52\|1\|DA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.	X-RAY DIFFRACTION	3.21	117
101	4V64\|1\|DA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.	X-RAY DIFFRACTION	3.5	117
102	4V54\|1\|DA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).	X-RAY DIFFRACTION	3.3	117
103	4V4Q\|1\|DA	Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.	X-RAY DIFFRACTION	3.46	117
104	4V4H\|1\|DA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.	X-RAY DIFFRACTION	3.46	117

Equivalence class NR_3.5_10157.40 Obsolete

Release history

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