#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15DM6|1|Y (rep)5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal structure of the 50S ribosomal subunit from Deinococcus radioduransX-ray diffraction2.92015-11-11
24IOA|1|Y5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radioduransX-ray diffraction3.22013-03-06
34IO9|1|Y5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radioduransX-ray diffraction3.22013-03-06
42ZJR|1|Y5S ribosomal RNAribosomal 5S RNADeinococcus radioduransBacteriaRF00001Refined native structure of the large ribosomal subunit (50S) from Deinococcus radioduransX-ray diffraction2.912008-06-17
52ZJQ|1|Y5S ribosomal RNAribosomal 5S RNADeinococcus radioduransBacteriaRF00001Interaction of L7 with L11 induced by Microccocin binding to the Deinococcus radiodurans 50S subunitX-ray diffraction3.32008-06-17
63CF5|1|Z5S ribosomal RNARRNA-5S RIBOSOMAL RNADeinococcus radioduransBacteriaRF00001Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radioduransX-ray diffraction3.32008-06-17
73DLL|1|Z5S ribosomal RNArRNA-5S ribosomal RNADeinococcus radioduransBacteriaRF00001The oxazolidinone antibiotics perturb the ribosomal peptidyl-transferase center and effect tRNA positioningX-ray diffraction3.52008-09-16
85DM7|1|Y5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with hygromycin AX-ray diffraction32015-11-11
91Y69|1|95S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radioduransX-ray diffraction3.332005-03-01
105JVG|1|Y5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001The large ribosomal subunit from Deinococcus radiodurans in complex with avilamycinX-ray diffraction3.432016-11-09
111XBP|1|95S ribosomal RNA5S RIBOSOMAL RNADeinococcus radioduransBacteriaRF00001Inhibition of peptide bond formation by pleuromutilins: The structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with TiamulinX-ray diffraction3.52005-03-01
123PIP|1|Y5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunitX-ray diffraction3.452011-02-23
131SM1|1|95S ribosomal RNA5S RIBOSOMAL RNADeinococcus radioduransBacteriaRF00001COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTINX-ray diffraction3.422004-08-03
141NWX|1|95S ribosomal RNA5S RIBOSOMAL RNADeinococcus radioduransBacteriaRF00001COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773X-ray diffraction3.52003-03-18
151NKW|1|95S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal Structure Of The Large Ribosomal Subunit From Deinococcus RadioduransX-ray diffraction3.12003-02-11
161NWY|1|95S ribosomal RNA5S RIBOSOMAL RRNADeinococcus radioduransBacteriaRF00001COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCINX-ray diffraction3.32003-03-18
173PIO|1|Y5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunitX-ray diffraction3.252011-02-23

Release history

Release2.1012.1022.1032.1042.1052.1062.1072.1082.1092.1102.1112.1122.1132.1142.1152.1162.1172.1182.1192.1202.1212.1222.1232.1242.1252.1262.1272.1282.1292.1302.1312.1322.1332.1342.1352.1362.1372.1382.1392.1402.1412.1422.1432.1442.1452.1462.1472.1482.1492.1502.1512.1522.1532.1542.1552.1562.1572.158
Date2016-11-112016-11-182016-11-252016-12-022016-12-092016-12-162016-12-232016-12-302017-01-062017-01-132017-01-202017-01-272017-02-032017-02-102017-02-172017-02-242017-03-032017-03-102017-03-172017-03-242017-03-312017-04-112017-04-152017-04-262017-04-292017-05-092017-05-152017-05-202017-05-272017-06-072017-06-112017-06-212017-06-242017-06-282017-07-042017-07-102017-07-152017-07-262017-07-312017-08-052017-08-122017-08-192017-08-262017-09-032017-09-092017-09-162017-09-232017-09-302017-10-072017-10-142017-10-212017-10-282017-11-032017-11-102017-11-172017-11-242017-12-012017-12-08

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.5_17405.5NR_3.5_17405.42.101(16) 5DM7|1|Y, 5DM6|1|Y, 4IOA|1|Y, 4IO9|1|Y, 3PIP|1|Y, 3PIO|1|Y, 3DLL|1|Z, 3CF5|1|Z, 2ZJR|1|Y, 2ZJQ|1|Y, 1Y69|1|9, 1XBP|1|9, 1SM1|1|9, 1NWY|1|9, 1NWX|1|9, 1NKW|1|9(1) 5JVG|1|Y(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.5_17405.5NR_3.5_17405.63.0(17) 3CF5|1|Z, 2ZJR|1|Y, 2ZJQ|1|Y, 1Y69|1|9, 1XBP|1|9, 1SM1|1|9, 1NWY|1|9, 1NWX|1|9, 1NKW|1|9, 5JVG|1|Y, 5DM7|1|Y, 5DM6|1|Y, 4IOA|1|Y, 4IO9|1|Y, 3PIP|1|Y, 3PIO|1|Y, 3DLL|1|Z(0) (1) 5DM8|1|Y

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
13DLL|1|ZThe oxazolidinone antibiotics perturb the ribosomal peptidyl-transferase center and effect tRNA positioningX-RAY DIFFRACTION3.5122
24IOA|1|YCrystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radioduransX-RAY DIFFRACTION3.2122
34IO9|1|YCrystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radioduransX-RAY DIFFRACTION3.2122
42ZJQ|1|YInteraction of L7 with L11 induced by Microccocin binding to the Deinococcus radiodurans 50S subunitX-RAY DIFFRACTION3.3122
53CF5|1|ZThiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radioduransX-RAY DIFFRACTION3.3122
62ZJR|1|YRefined native structure of the large ribosomal subunit (50S) from Deinococcus radioduransX-RAY DIFFRACTION2.91122
73PIP|1|YCrystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunitX-RAY DIFFRACTION3.45120
83PIO|1|YCrystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunitX-RAY DIFFRACTION3.25120
95JVG|1|YThe large ribosomal subunit from Deinococcus radiodurans in complex with avilamycinX-RAY DIFFRACTION3.43120
105DM6|1|YCrystal structure of the 50S ribosomal subunit from Deinococcus radioduransX-RAY DIFFRACTION2.9122
115DM7|1|YCrystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with hygromycin AX-RAY DIFFRACTION3122
121Y69|1|9RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radioduransX-RAY DIFFRACTION3.33118
131XBP|1|9Inhibition of peptide bond formation by pleuromutilins: The structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with TiamulinX-RAY DIFFRACTION3.5118
141NWX|1|9COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773X-RAY DIFFRACTION3.5118
151NKW|1|9Crystal Structure Of The Large Ribosomal Subunit From Deinococcus RadioduransX-RAY DIFFRACTION3.1118
161NWY|1|9COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCINX-RAY DIFFRACTION3.3118
171SM1|1|9COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTINX-RAY DIFFRACTION3.42118
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