Equivalence class NR_3.5_17996.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4J7L|1|B (rep) | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | synthetic construct | Synthetic | Crystal structure of mouse DXO in complex with PRODUCT RNA AND two MAGNESIUM ions | X-ray diffraction | 1.8 | 2013-03-27 | ||
| 2 | 5W0M|1|J | U5 single-stranded RNA | synthetic construct | Synthetic | Structure of human TUT7 catalytic module (CM) in complex with U5 RNA | X-ray diffraction | 2.3 | 2017-06-28 | ||
| 3 | 5BUD|1|E | RNA (5'-R(P*UP*UP*UP*U)-3') | Candida albicans | Eukarya | Crystal structure of Candida albicans Rai1 in complex with pU5-Mn2+ | X-ray diffraction | 1.99 | 2015-07-08 | ||
| 4 | 5W0M|1|I | U5 single-stranded RNA | synthetic construct | Synthetic | Structure of human TUT7 catalytic module (CM) in complex with U5 RNA | X-ray diffraction | 2.3 | 2017-06-28 | ||
| 5 | 5W0M|1|H | U5 single-stranded RNA | synthetic construct | Synthetic | Structure of human TUT7 catalytic module (CM) in complex with U5 RNA | X-ray diffraction | 2.3 | 2017-06-28 | ||
| 6 | 4J7M|1|B | RNA (5'-R(P*UP*(U37)P*(U37)P*UP*U)-3') | synthetic construct | Synthetic | Crystal structure of mouse DXO in complex with substrate mimic RNA and calcium ion | X-ray diffraction | 1.7 | 2013-03-27 | ||
| 7 | 5BUD|1|D | RNA (5'-R(P*UP*UP*UP*U)-3') | Candida albicans | Eukarya | Crystal structure of Candida albicans Rai1 in complex with pU5-Mn2+ | X-ray diffraction | 1.99 | 2015-07-08 | ||
| 8 | 6A4E|1|B | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | synthetic construct | Synthetic | Two linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H | X-ray diffraction | 2.45 | 2019-03-13 | ||
| 9 | 6A4E|1|D | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | synthetic construct | Synthetic | Two linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H | X-ray diffraction | 2.45 | 2019-03-13 | ||
| 10 | 6HXX|1|Aa | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Potato virus Y | Viruses | Potato virus Y | Electron microscopy | 3.4 | 2019-08-07 | ||
| 11 | 6HXX|1|Ab | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Potato virus Y | Viruses | Potato virus Y | Electron microscopy | 3.4 | 2019-08-07 | ||
| 12 | 6HXX|1|Ac | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Potato virus Y | Viruses | Potato virus Y | Electron microscopy | 3.4 | 2019-08-07 | ||
| 13 | 6HXX|1|Ad | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Potato virus Y | Viruses | Potato virus Y | Electron microscopy | 3.4 | 2019-08-07 | ||
| 14 | 6HXX|1|Ae | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Potato virus Y | Viruses | Potato virus Y | Electron microscopy | 3.4 | 2019-08-07 | ||
| 15 | 6HXX|1|Af | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Potato virus Y | Viruses | Potato virus Y | Electron microscopy | 3.4 | 2019-08-07 | ||
| 16 | 6HXX|1|Ag | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Potato virus Y | Viruses | Potato virus Y | Electron microscopy | 3.4 | 2019-08-07 | ||
| 17 | 6HXX|1|Ah | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Potato virus Y | Viruses | Potato virus Y | Electron microscopy | 3.4 | 2019-08-07 | ||
| 18 | 6HXX|1|Ai | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Potato virus Y | Viruses | Potato virus Y | Electron microscopy | 3.4 | 2019-08-07 | ||
| 19 | 6HXX|1|Aj | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Potato virus Y | Viruses | Potato virus Y | Electron microscopy | 3.4 | 2019-08-07 | ||
| 20 | 6HXX|1|Ak | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Potato virus Y | Viruses | Potato virus Y | Electron microscopy | 3.4 | 2019-08-07 | ||
| 21 | 6HXX|1|Al | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Potato virus Y | Viruses | Potato virus Y | Electron microscopy | 3.4 | 2019-08-07 | ||
| 22 | 6HXX|1|Am | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Potato virus Y | Viruses | Potato virus Y | Electron microscopy | 3.4 | 2019-08-07 | ||
| 23 | 6HXX|1|An | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Potato virus Y | Viruses | Potato virus Y | Electron microscopy | 3.4 | 2019-08-07 | ||
| 24 | 6HXX|1|Ao | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Potato virus Y | Viruses | Potato virus Y | Electron microscopy | 3.4 | 2019-08-07 | ||
| 25 | 6HXX|1|Ap | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Potato virus Y | Viruses | Potato virus Y | Electron microscopy | 3.4 | 2019-08-07 | ||
| 26 | 6HXX|1|Aq | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Potato virus Y | Viruses | Potato virus Y | Electron microscopy | 3.4 | 2019-08-07 | ||
| 27 | 6HXX|1|Ar | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Potato virus Y | Viruses | Potato virus Y | Electron microscopy | 3.4 | 2019-08-07 | ||
| 28 | 6HXX|1|As | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Potato virus Y | Viruses | Potato virus Y | Electron microscopy | 3.4 | 2019-08-07 | ||
| 29 | 6HXX|1|At | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Potato virus Y | Viruses | Potato virus Y | Electron microscopy | 3.4 | 2019-08-07 | ||
| 30 | 6HXX|1|Au | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Potato virus Y | Viruses | Potato virus Y | Electron microscopy | 3.4 | 2019-08-07 | ||
| 31 | 6HXX|1|Av | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Potato virus Y | Viruses | Potato virus Y | Electron microscopy | 3.4 | 2019-08-07 | ||
| 32 | 6HXX|1|Aw | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Potato virus Y | Viruses | Potato virus Y | Electron microscopy | 3.4 | 2019-08-07 | ||
| 33 | 6HXX|1|Ax | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Potato virus Y | Viruses | Potato virus Y | Electron microscopy | 3.4 | 2019-08-07 | ||
| 34 | 6HXX|1|Ay | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Potato virus Y | Viruses | Potato virus Y | Electron microscopy | 3.4 | 2019-08-07 | ||
| 35 | 6HXX|1|Az | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Potato virus Y | Viruses | Potato virus Y | Electron microscopy | 3.4 | 2019-08-07 | ||
| 36 | 6HXX|1|Ba | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Potato virus Y | Viruses | Potato virus Y | Electron microscopy | 3.4 | 2019-08-07 | ||
| 37 | 6HXX|1|Bb | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Potato virus Y | Viruses | Potato virus Y | Electron microscopy | 3.4 | 2019-08-07 | ||
| 38 | 6HXX|1|Bc | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Potato virus Y | Viruses | Potato virus Y | Electron microscopy | 3.4 | 2019-08-07 | ||
| 39 | 6HXX|1|Bd | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Potato virus Y | Viruses | Potato virus Y | Electron microscopy | 3.4 | 2019-08-07 | ||
| 40 | 6HXX|1|Be | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Potato virus Y | Viruses | Potato virus Y | Electron microscopy | 3.4 | 2019-08-07 | ||
| 41 | 6HXX|1|Bf | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Potato virus Y | Viruses | Potato virus Y | Electron microscopy | 3.4 | 2019-08-07 | ||
| 42 | 6HXX|1|Bg | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Potato virus Y | Viruses | Potato virus Y | Electron microscopy | 3.4 | 2019-08-07 | ||
| 43 | 6HXX|1|Bh | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Potato virus Y | Viruses | Potato virus Y | Electron microscopy | 3.4 | 2019-08-07 | ||
| 44 | 6HXX|1|Bi | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | Potato virus Y | Viruses | Potato virus Y | Electron microscopy | 3.4 | 2019-08-07 |
Release history
| Release | 3.100 | 3.101 | 3.102 | 3.103 | 3.104 | 3.105 | 3.106 | 3.107 | 3.108 | 3.109 | 3.110 | 3.111 | 3.112 | 3.113 | 3.114 | 3.115 | 3.116 | 3.117 | 3.118 | 3.119 | 3.120 | 3.121 | 3.122 | 3.123 | 3.124 | 3.125 | 3.126 | 3.127 | 3.128 | 3.129 | 3.130 | 3.131 | 3.132 | 3.133 | 3.134 | 3.135 | 3.136 | 3.137 | 3.138 | 3.139 | 3.140 | 3.141 | 3.142 | 3.143 | 3.144 | 3.145 | 3.146 | 3.147 | 3.148 | 3.149 | 3.150 | 3.151 | 3.152 | 3.153 | 3.154 | 3.155 | 3.156 | 3.157 | 3.158 | 3.159 | 3.160 | 3.161 | 3.162 | 3.163 | 3.164 | 3.165 | 3.166 | 3.167 | 3.168 | 3.169 | 3.170 | 3.171 | 3.172 | 3.173 | 3.174 | 3.175 | 3.176 | 3.177 | 3.178 | 3.179 | 3.180 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-11-13 | 2019-11-20 | 2019-11-27 | 2019-12-04 | 2019-12-11 | 2019-12-18 | 2019-12-25 | 2020-01-01 | 2020-01-08 | 2020-01-15 | 2020-01-22 | 2020-01-29 | 2020-02-05 | 2020-02-12 | 2020-02-19 | 2020-02-26 | 2020-03-04 | 2020-03-11 | 2020-03-18 | 2020-03-25 | 2020-04-01 | 2020-04-08 | 2020-04-15 | 2020-04-22 | 2020-04-29 | 2020-05-06 | 2020-05-13 | 2020-05-20 | 2020-05-27 | 2020-06-03 | 2020-06-10 | 2020-06-17 | 2020-06-24 | 2020-07-01 | 2020-07-08 | 2020-07-15 | 2020-07-22 | 2020-07-29 | 2020-08-05 | 2020-08-12 | 2020-08-19 | 2020-08-26 | 2020-09-02 | 2020-09-09 | 2020-09-16 | 2020-09-23 | 2020-09-30 | 2020-10-07 | 2020-10-14 | 2020-10-21 | 2020-10-28 | 2020-11-04 | 2020-11-11 | 2020-11-18 | 2020-11-25 | 2020-12-02 | 2020-12-09 | 2020-12-16 | 2020-12-23 | 2020-12-30 | 2021-01-06 | 2021-01-13 | 2021-01-20 | 2021-01-27 | 2021-02-03 | 2021-02-10 | 2021-02-17 | 2021-02-24 | 2021-03-03 | 2021-03-10 | 2021-03-17 | 2021-03-24 | 2021-03-31 | 2021-04-07 | 2021-04-14 | 2021-04-21 | 2021-04-28 | 2021-05-05 | 2021-05-12 | 2021-05-19 | 2021-05-26 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.5_17996.2 | NR_3.5_17996.1 | 3.100 | (44) 6HXX|1|Bi, 6HXX|1|Aw, 6HXX|1|Av, 6HXX|1|Au, 6HXX|1|At, 6HXX|1|As, 6HXX|1|Ar, 6HXX|1|Aq, 6HXX|1|Ap, 6HXX|1|Ao, 6HXX|1|Ax, 6HXX|1|Ay, 6HXX|1|Bh, 6HXX|1|Bg, 6HXX|1|Bf, 6HXX|1|Be, 6HXX|1|Bd, 6HXX|1|Bc, 6HXX|1|Bb, 6HXX|1|Ba, 6HXX|1|Az, 6HXX|1|An, 6HXX|1|Am, 6HXX|1|Aa, 6A4E|1|D, 6A4E|1|B, 5W0M|1|J, 5W0M|1|I, 5W0M|1|H, 5BUD|1|E, 5BUD|1|D, 4J7M|1|B, 6HXX|1|Ab, 6HXX|1|Ac, 6HXX|1|Al, 6HXX|1|Ak, 6HXX|1|Aj, 6HXX|1|Ai, 6HXX|1|Ah, 6HXX|1|Ag, 6HXX|1|Af, 6HXX|1|Ae, 6HXX|1|Ad, 4J7L|1|B | (0) | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.5_17996.2 | NR_3.5_17996.3 | 3.181 | (44) 6HXX|1|Bi, 6HXX|1|Aw, 6HXX|1|Av, 6HXX|1|Au, 6HXX|1|At, 6HXX|1|As, 6HXX|1|Ar, 6HXX|1|Aq, 6HXX|1|Ap, 6HXX|1|Ao, 6HXX|1|Ax, 6HXX|1|Ay, 6HXX|1|Bh, 6HXX|1|Bg, 6HXX|1|Bf, 6HXX|1|Be, 6HXX|1|Bd, 6HXX|1|Bc, 6HXX|1|Bb, 6HXX|1|Ba, 6HXX|1|Az, 6HXX|1|An, 6HXX|1|Am, 6HXX|1|Aa, 6A4E|1|D, 6A4E|1|B, 5W0M|1|J, 5W0M|1|I, 5W0M|1|H, 5BUD|1|E, 5BUD|1|D, 4J7M|1|B, 6HXX|1|Ab, 6HXX|1|Ac, 6HXX|1|Al, 6HXX|1|Ak, 6HXX|1|Aj, 6HXX|1|Ai, 6HXX|1|Ah, 6HXX|1|Ag, 6HXX|1|Af, 6HXX|1|Ae, 6HXX|1|Ad, 4J7L|1|B | (0) | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4J7M|1|B | Crystal structure of mouse DXO in complex with substrate mimic RNA and calcium ion | X-RAY DIFFRACTION | 1.7 | 3 |
| 2 | 4J7L|1|B | Crystal structure of mouse DXO in complex with PRODUCT RNA AND two MAGNESIUM ions | X-RAY DIFFRACTION | 1.8 | 5 |
| 3 | 5BUD|1|E | Crystal structure of Candida albicans Rai1 in complex with pU5-Mn2+ | X-RAY DIFFRACTION | 1.99 | 5 |
| 4 | 5BUD|1|D | Crystal structure of Candida albicans Rai1 in complex with pU5-Mn2+ | X-RAY DIFFRACTION | 1.99 | 4 |
| 5 | 6HXX|1|Bh | Potato virus Y | ELECTRON MICROSCOPY | 3.4 | 5 |
| 6 | 6HXX|1|Ay | Potato virus Y | ELECTRON MICROSCOPY | 3.4 | 5 |
| 7 | 6HXX|1|As | Potato virus Y | ELECTRON MICROSCOPY | 3.4 | 5 |
| 8 | 6HXX|1|Af | Potato virus Y | ELECTRON MICROSCOPY | 3.4 | 5 |
| 9 | 6HXX|1|Ak | Potato virus Y | ELECTRON MICROSCOPY | 3.4 | 5 |
| 10 | 6HXX|1|Al | Potato virus Y | ELECTRON MICROSCOPY | 3.4 | 5 |
| 11 | 6HXX|1|At | Potato virus Y | ELECTRON MICROSCOPY | 3.4 | 5 |
| 12 | 6HXX|1|Ab | Potato virus Y | ELECTRON MICROSCOPY | 3.4 | 5 |
| 13 | 6HXX|1|Ad | Potato virus Y | ELECTRON MICROSCOPY | 3.4 | 5 |
| 14 | 6HXX|1|Ax | Potato virus Y | ELECTRON MICROSCOPY | 3.4 | 5 |
| 15 | 6HXX|1|An | Potato virus Y | ELECTRON MICROSCOPY | 3.4 | 5 |
| 16 | 6HXX|1|Av | Potato virus Y | ELECTRON MICROSCOPY | 3.4 | 5 |
| 17 | 6HXX|1|Aq | Potato virus Y | ELECTRON MICROSCOPY | 3.4 | 5 |
| 18 | 6HXX|1|Bd | Potato virus Y | ELECTRON MICROSCOPY | 3.4 | 5 |
| 19 | 6HXX|1|Bg | Potato virus Y | ELECTRON MICROSCOPY | 3.4 | 5 |
| 20 | 6HXX|1|Ba | Potato virus Y | ELECTRON MICROSCOPY | 3.4 | 5 |
| 21 | 6HXX|1|Ae | Potato virus Y | ELECTRON MICROSCOPY | 3.4 | 5 |
| 22 | 6HXX|1|Aj | Potato virus Y | ELECTRON MICROSCOPY | 3.4 | 5 |
| 23 | 6HXX|1|Ai | Potato virus Y | ELECTRON MICROSCOPY | 3.4 | 5 |
| 24 | 6HXX|1|Bc | Potato virus Y | ELECTRON MICROSCOPY | 3.4 | 5 |
| 25 | 6HXX|1|Am | Potato virus Y | ELECTRON MICROSCOPY | 3.4 | 5 |
| 26 | 6HXX|1|Ah | Potato virus Y | ELECTRON MICROSCOPY | 3.4 | 5 |
| 27 | 6HXX|1|Bb | Potato virus Y | ELECTRON MICROSCOPY | 3.4 | 5 |
| 28 | 6HXX|1|Au | Potato virus Y | ELECTRON MICROSCOPY | 3.4 | 5 |
| 29 | 6HXX|1|Bi | Potato virus Y | ELECTRON MICROSCOPY | 3.4 | 5 |
| 30 | 6HXX|1|Ar | Potato virus Y | ELECTRON MICROSCOPY | 3.4 | 5 |
| 31 | 6HXX|1|Ap | Potato virus Y | ELECTRON MICROSCOPY | 3.4 | 5 |
| 32 | 6HXX|1|Ag | Potato virus Y | ELECTRON MICROSCOPY | 3.4 | 5 |
| 33 | 6HXX|1|Az | Potato virus Y | ELECTRON MICROSCOPY | 3.4 | 5 |
| 34 | 6HXX|1|Ao | Potato virus Y | ELECTRON MICROSCOPY | 3.4 | 5 |
| 35 | 6HXX|1|Ac | Potato virus Y | ELECTRON MICROSCOPY | 3.4 | 5 |
| 36 | 6HXX|1|Aa | Potato virus Y | ELECTRON MICROSCOPY | 3.4 | 5 |
| 37 | 6HXX|1|Be | Potato virus Y | ELECTRON MICROSCOPY | 3.4 | 5 |
| 38 | 6HXX|1|Aw | Potato virus Y | ELECTRON MICROSCOPY | 3.4 | 5 |
| 39 | 6HXX|1|Bf | Potato virus Y | ELECTRON MICROSCOPY | 3.4 | 5 |
| 40 | 5W0M|1|J | Structure of human TUT7 catalytic module (CM) in complex with U5 RNA | X-RAY DIFFRACTION | 2.3 | 4 |
| 41 | 5W0M|1|I | Structure of human TUT7 catalytic module (CM) in complex with U5 RNA | X-RAY DIFFRACTION | 2.3 | 4 |
| 42 | 5W0M|1|H | Structure of human TUT7 catalytic module (CM) in complex with U5 RNA | X-RAY DIFFRACTION | 2.3 | 4 |
| 43 | 6A4E|1|B | Two linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H | X-RAY DIFFRACTION | 2.45 | 2 |
| 44 | 6A4E|1|D | Two linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H | X-RAY DIFFRACTION | 2.45 | 2 |