Equivalence class NR_3.5_18586.28 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5TBW|1|AS (rep) | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-ray diffraction | 3 | 121 | 2017-07-26 |
| 2 | 5TBW|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-ray diffraction | 3 | 121 | 2017-07-26 |
| 3 | 4V88|1|A3 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-ray diffraction | 3 | 121 | 2014-07-09 |
| 4 | 4V88|1|A7 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-ray diffraction | 3 | 121 | 2014-07-09 |
| 5 | 5I4L|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 121 | 2016-06-22 |
| 6 | 6HHQ|1|AS | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of compound C45 bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 121 | 2019-02-20 |
| 7 | 5MEI|1|AS | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Agelastatin A bound to the 80S ribosome | X-ray diffraction | 3.5 | 121 | 2017-06-28 |
| 8 | 5MEI|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Agelastatin A bound to the 80S ribosome | X-ray diffraction | 3.5 | 121 | 2017-06-28 |
| 9 | 5OBM|1|7 | 5S ribosomal RNA | 5S Ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Gentamicin bound to the yeast 80S ribosome | X-ray diffraction | 3.4 | 121 | 2017-12-13 |
| 10 | 6HHQ|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of compound C45 bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 121 | 2019-02-20 |
| 11 | 5LYB|1|7 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-ray diffraction | 3.25 | 121 | 2016-11-23 |
| 12 | 5ON6|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of haemanthamine bound to the 80S ribosome | X-ray diffraction | 3.1 | 121 | 2018-02-28 |
| 13 | 5I4L|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 121 | 2016-06-22 |
| 14 | 5ON6|1|AS | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of haemanthamine bound to the 80S ribosome | X-ray diffraction | 3.1 | 121 | 2018-02-28 |
| 15 | 5LYB|1|3 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-ray diffraction | 3.25 | 121 | 2016-11-23 |
| 16 | 5OBM|1|3 | 5S ribosomal RNA | 5S Ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Gentamicin bound to the yeast 80S ribosome | X-ray diffraction | 3.4 | 121 | 2017-12-13 |
| 17 | 5NDV|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Paromomycin bound to the yeast 80S ribosome | X-ray diffraction | 3.3 | 121 | 2017-12-13 |
| 18 | 5NDV|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Paromomycin bound to the yeast 80S ribosome | X-ray diffraction | 3.3 | 121 | 2017-12-13 |
| 19 | 5TGM|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.5 | 121 | 2017-01-18 |
| 20 | 5TGM|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.5 | 121 | 2017-01-18 |
| 21 | 5DAT|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-ray diffraction | 3.15 | 121 | 2016-08-31 |
| 22 | 5DGV|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.1 | 121 | 2016-12-14 |
| 23 | 5DGF|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.3 | 121 | 2016-12-14 |
| 24 | 5DAT|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-ray diffraction | 3.15 | 121 | 2016-08-31 |
| 25 | 5DGE|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome | X-ray diffraction | 3.45 | 121 | 2017-01-25 |
| 26 | 5DGV|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.1 | 121 | 2016-12-14 |
| 27 | 5TGA|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.3 | 121 | 2016-11-23 |
| 28 | 5DC3|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Complex of yeast 80S ribosome with non-modified eIF5A | X-ray diffraction | 3.25 | 121 | 2016-06-01 |
| 29 | 5DGE|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome | X-ray diffraction | 3.45 | 121 | 2017-01-25 |
| 30 | 5DC3|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Complex of yeast 80S ribosome with non-modified eIF5A | X-ray diffraction | 3.25 | 121 | 2016-06-01 |
| 31 | 5TGA|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.3 | 121 | 2016-11-23 |
| 32 | 5DGF|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.3 | 121 | 2016-12-14 |
| 33 | 4U4R|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-ray diffraction | 2.8 | 121 | 2014-10-22 |
| 34 | 4U3U|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-ray diffraction | 2.9 | 121 | 2014-10-22 |
| 35 | 4U4R|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-ray diffraction | 2.8 | 121 | 2014-10-22 |
| 36 | 4U3U|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-ray diffraction | 2.9 | 121 | 2014-10-22 |
| 37 | 4U4Q|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 121 | 2014-10-22 |
| 38 | 4U4Q|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 121 | 2014-10-22 |
| 39 | 4U3M|1|7 | 5S ribosomal RNA | 5.8s rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-ray diffraction | 3 | 121 | 2014-10-22 |
| 40 | 4U52|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-ray diffraction | 3 | 121 | 2014-10-22 |
| 41 | 4U3M|1|3 | 5S ribosomal RNA | 5.8s rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-ray diffraction | 3 | 121 | 2014-10-22 |
| 42 | 6QIK|1|x | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles | Electron microscopy | 3.1 | 121 | 2019-06-26 |
| 43 | 4U4U|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 121 | 2014-10-22 |
| 44 | 6Q8Y|1|BR | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex | Electron microscopy | 3.1 | 121 | 2019-03-13 |
| 45 | 4U6F|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 121 | 2014-10-22 |
| 46 | 4U52|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-ray diffraction | 3 | 121 | 2014-10-22 |
| 47 | 4U4U|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 121 | 2014-10-22 |
| 48 | 6RZZ|1|x | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles | Electron microscopy | 3.2 | 121 | 2019-06-26 |
| 49 | 4U4N|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 121 | 2014-10-22 |
| 50 | 4U6F|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 121 | 2014-10-22 |
| 51 | 3JCT|1|3 | 5S ribosomal RNA | RDN5-2 rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Cryo-em structure of eukaryotic pre-60S ribosomal subunits | Electron microscopy | 3.08 | 121 | 2016-06-01 |
| 52 | 4U3N|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 121 | 2014-10-22 |
| 53 | 4U4Z|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 121 | 2014-10-22 |
| 54 | 4U4N|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 121 | 2014-10-22 |
| 55 | 6RI5|1|x | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles | Electron microscopy | 3.3 | 121 | 2019-06-26 |
| 56 | 6S47|1|AB | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1 | Electron microscopy | 3.28 | 121 | 2019-07-24 |
| 57 | 4U4Z|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 121 | 2014-10-22 |
| 58 | 4U55|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 121 | 2014-10-22 |
| 59 | 4U50|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 121 | 2014-10-22 |
| 60 | 5T62|1|B | 5S ribosomal RNA | 5S Ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex | Electron microscopy | 3.1 | 121 | 2017-02-08 |
| 61 | 5M1J|1|34 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Nonstop ribosomal complex bound with Dom34 and Hbs1 | Electron microscopy | 3.3 | 121 | 2017-01-18 |
| 62 | 4U50|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 121 | 2014-10-22 |
| 63 | 4U3N|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 121 | 2014-10-22 |
| 64 | 4U4Y|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 121 | 2014-10-22 |
| 65 | 4U4Y|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 121 | 2014-10-22 |
| 66 | 4U51|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 121 | 2014-10-22 |
| 67 | 6QT0|1|x | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles | Electron microscopy | 3.4 | 121 | 2019-06-26 |
| 68 | 4U55|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 121 | 2014-10-22 |
| 69 | 5H4P|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1 | Electron microscopy | 3.07 | 121 | 2017-01-25 |
| 70 | 4U53|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-ray diffraction | 3.3 | 121 | 2014-10-22 |
| 71 | 5APO|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1 | Electron microscopy | 3.41 | 121 | 2015-12-16 |
| 72 | 6QTZ|1|x | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles | Electron microscopy | 3.5 | 121 | 2019-06-26 |
| 73 | 6N8M|1|B | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit | Electron microscopy | 3.5 | 121 | 2019-03-13 |
| 74 | 4U51|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 121 | 2014-10-22 |
| 75 | 4U53|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-ray diffraction | 3.3 | 121 | 2014-10-22 |
| 76 | 6N8O|1|B | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit | Electron microscopy | 3.5 | 121 | 2019-03-13 |
| 77 | 6N8J|1|2 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit | Electron microscopy | 3.5 | 121 | 2019-03-13 |
| 78 | 6R87|1|3 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1) | Electron microscopy | 3.4 | 121 | 2019-06-26 |
| 79 | 6HD7|1|3 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Cryo-EM structure of the ribosome-NatA complex | Electron microscopy | 3.4 | 121 | 2018-12-19 |
| 80 | 5JUP|1|D | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit) | Electron microscopy | 3.5 | 121 | 2016-10-05 |
| 81 | 4U56|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-ray diffraction | 3.45 | 121 | 2014-10-22 |
| 82 | 4U56|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-ray diffraction | 3.45 | 121 | 2014-10-22 |
Release history
| Release | 3.84 |
|---|---|
| Date | 2019-07-26 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.5_18586.28 | NR_3.5_18586.27 | 3.84 | (81) 3JCT|1|3, 4U3M|1|3, 4U3M|1|7, 4U3N|1|3, 4U3N|1|7, 4U3U|1|3, 4U3U|1|7, 4U4N|1|3, 4U4N|1|7, 4U4Q|1|3, 4U4Q|1|7, 4U4R|1|3, 4U4R|1|7, 4U4U|1|3, 4U4U|1|7, 4U4Y|1|3, 4U4Y|1|7, 4U4Z|1|3, 4U4Z|1|7, 4U50|1|3, 4U50|1|7, 4U51|1|3, 4U51|1|7, 4U52|1|3, 4U52|1|7, 4U53|1|3, 4U53|1|7, 4U55|1|3, 4U55|1|7, 4U56|1|3, 4U56|1|7, 4U6F|1|3, 4U6F|1|7, 4V88|1|A3, 4V88|1|A7, 5APO|1|7, 5DAT|1|3, 5DAT|1|7, 5DC3|1|3, 5DC3|1|7, 5DGE|1|3, 5DGE|1|7, 5DGF|1|3, 5DGF|1|7, 5DGV|1|3, 5DGV|1|7, 5H4P|1|3, 5I4L|1|3, 5I4L|1|7, 5JUP|1|D, 5LYB|1|3, 5LYB|1|7, 5M1J|1|34, 5MEI|1|3, 5MEI|1|AS, 5NDV|1|3, 5NDV|1|7, 5OBM|1|3, 5OBM|1|7, 5ON6|1|3, 5ON6|1|AS, 5T62|1|B, 5TBW|1|3, 5TBW|1|AS, 5TGA|1|3, 5TGA|1|7, 5TGM|1|3, 5TGM|1|7, 6HD7|1|3, 6HHQ|1|3, 6HHQ|1|AS, 6N8J|1|2, 6N8M|1|B, 6N8O|1|B, 6Q8Y|1|BR, 6QIK|1|x, 6QT0|1|x, 6QTZ|1|x, 6R87|1|3, 6RI5|1|x, 6RZZ|1|x | (1) 6S47|1|AB | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.5_18586.28 | NR_3.5_18586.29 | 3.85 | (82) 3JCT|1|3, 4U3M|1|3, 4U3M|1|7, 4U3N|1|3, 4U3N|1|7, 4U3U|1|3, 4U3U|1|7, 4U4N|1|3, 4U4N|1|7, 4U4Q|1|3, 4U4Q|1|7, 4U4R|1|3, 4U4R|1|7, 4U4U|1|3, 4U4U|1|7, 4U4Y|1|3, 4U4Y|1|7, 4U4Z|1|3, 4U4Z|1|7, 4U50|1|3, 4U50|1|7, 4U51|1|3, 4U51|1|7, 4U52|1|3, 4U52|1|7, 4U53|1|3, 4U53|1|7, 4U55|1|3, 4U55|1|7, 4U56|1|3, 4U56|1|7, 4U6F|1|3, 4U6F|1|7, 4V88|1|A3, 4V88|1|A7, 5APO|1|7, 5DAT|1|3, 5DAT|1|7, 5DC3|1|3, 5DC3|1|7, 5DGE|1|3, 5DGE|1|7, 5DGF|1|3, 5DGF|1|7, 5DGV|1|3, 5DGV|1|7, 5H4P|1|3, 5I4L|1|3, 5I4L|1|7, 5JUP|1|D, 5LYB|1|3, 5LYB|1|7, 5M1J|1|34, 5MEI|1|3, 5MEI|1|AS, 5NDV|1|3, 5NDV|1|7, 5OBM|1|3, 5OBM|1|7, 5ON6|1|3, 5ON6|1|AS, 5T62|1|B, 5TBW|1|3, 5TBW|1|AS, 5TGA|1|3, 5TGA|1|7, 5TGM|1|3, 5TGM|1|7, 6HD7|1|3, 6HHQ|1|3, 6HHQ|1|AS, 6N8J|1|2, 6N8M|1|B, 6N8O|1|B, 6Q8Y|1|BR, 6QIK|1|x, 6QT0|1|x, 6QTZ|1|x, 6R87|1|3, 6RI5|1|x, 6RZZ|1|x, 6S47|1|AB | (0) | (1) 6R86|1|3 |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 6HD7|1|3 | Cryo-EM structure of the ribosome-NatA complex | ELECTRON MICROSCOPY | 3.4 | 121 | |
| 2 | 3JCT|1|3 | Cryo-em structure of eukaryotic pre-60S ribosomal subunits | ELECTRON MICROSCOPY | 3.08 | 121 | |
| 3 | 5M1J|1|34 | Nonstop ribosomal complex bound with Dom34 and Hbs1 | ELECTRON MICROSCOPY | 3.3 | 121 | |
| 4 | 5JUP|1|D | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit) | ELECTRON MICROSCOPY | 3.5 | 121 | |
| 5 | 6S47|1|AB | Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1 | ELECTRON MICROSCOPY | 3.28 | 121 | |
| 6 | 6HHQ|1|AS | Crystal structure of compound C45 bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 121 | |
| 7 | 5TBW|1|AS | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 121 | |
| 8 | 5ON6|1|AS | Crystal structure of haemanthamine bound to the 80S ribosome | X-RAY DIFFRACTION | 3.1 | 121 | |
| 9 | 5MEI|1|AS | Crystal structure of Agelastatin A bound to the 80S ribosome | X-RAY DIFFRACTION | 3.5 | 121 | |
| 10 | 5TGM|1|7 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.5 | 121 | |
| 11 | 5DGE|1|7 | Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome | X-RAY DIFFRACTION | 3.45 | 121 | |
| 12 | 5DC3|1|7 | Complex of yeast 80S ribosome with non-modified eIF5A | X-RAY DIFFRACTION | 3.25 | 121 | |
| 13 | 5DGV|1|7 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.1 | 121 | |
| 14 | 5DGF|1|7 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.3 | 121 | |
| 15 | 5DAT|1|7 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-RAY DIFFRACTION | 3.15 | 121 | |
| 16 | 4U6F|1|7 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 121 | |
| 17 | 4U52|1|7 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 121 | |
| 18 | 4U50|1|7 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 121 | |
| 19 | 4U51|1|7 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 121 | |
| 20 | 4U53|1|7 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 121 | |
| 21 | 4U4U|1|7 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 121 | |
| 22 | 4U4Q|1|7 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 121 | |
| 23 | 4U4N|1|7 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 121 | |
| 24 | 4U4Z|1|7 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 121 | |
| 25 | 4U3N|1|7 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 121 | |
| 26 | 4U55|1|7 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 121 | |
| 27 | 4U4Y|1|7 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 121 | |
| 28 | 4U3M|1|7 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 121 | |
| 29 | 4U4R|1|7 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 121 | |
| 30 | 4U3U|1|7 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 121 | |
| 31 | 4V88|1|A7 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 121 | |
| 32 | 5I4L|1|7 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 121 | |
| 33 | 5LYB|1|7 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-RAY DIFFRACTION | 3.25 | 121 | |
| 34 | 5TGA|1|7 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.3 | 121 | |
| 35 | 4U56|1|7 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.45 | 121 | |
| 36 | 5NDV|1|7 | Crystal structure of Paromomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 121 | |
| 37 | 5TGM|1|3 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.5 | 121 | |
| 38 | 5DGF|1|3 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.3 | 121 | |
| 39 | 5DGE|1|3 | Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome | X-RAY DIFFRACTION | 3.45 | 121 | |
| 40 | 5DC3|1|3 | Complex of yeast 80S ribosome with non-modified eIF5A | X-RAY DIFFRACTION | 3.25 | 121 | |
| 41 | 4U56|1|3 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.45 | 121 | |
| 42 | 5DAT|1|3 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-RAY DIFFRACTION | 3.15 | 121 | |
| 43 | 5DGV|1|3 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.1 | 121 | |
| 44 | 5LYB|1|3 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-RAY DIFFRACTION | 3.25 | 121 | |
| 45 | 5TGA|1|3 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.3 | 121 | |
| 46 | 5I4L|1|3 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 121 | |
| 47 | 4U50|1|3 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 121 | |
| 48 | 4U52|1|3 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 121 | |
| 49 | 5ON6|1|3 | Crystal structure of haemanthamine bound to the 80S ribosome | X-RAY DIFFRACTION | 3.1 | 121 | |
| 50 | 5TBW|1|3 | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 121 | |
| 51 | 6HHQ|1|3 | Crystal structure of compound C45 bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 121 | |
| 52 | 4U4Q|1|3 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 121 | |
| 53 | 4U4U|1|3 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 121 | |
| 54 | 4U3M|1|3 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 121 | |
| 55 | 4U3U|1|3 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 121 | |
| 56 | 4U4R|1|3 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 121 | |
| 57 | 4V88|1|A3 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 121 | |
| 58 | 4U4Y|1|3 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 121 | |
| 59 | 4U4N|1|3 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 121 | |
| 60 | 4U4Z|1|3 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 121 | |
| 61 | 4U3N|1|3 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 121 | |
| 62 | 4U6F|1|3 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 121 | |
| 63 | 4U55|1|3 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 121 | |
| 64 | 4U51|1|3 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 121 | |
| 65 | 4U53|1|3 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 121 | |
| 66 | 5MEI|1|3 | Crystal structure of Agelastatin A bound to the 80S ribosome | X-RAY DIFFRACTION | 3.5 | 121 | |
| 67 | 5NDV|1|3 | Crystal structure of Paromomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 121 | |
| 68 | 6Q8Y|1|BR | Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex | ELECTRON MICROSCOPY | 3.1 | 121 | |
| 69 | 6R87|1|3 | Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1) | ELECTRON MICROSCOPY | 3.4 | 121 | |
| 70 | 5APO|1|7 | Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1 | ELECTRON MICROSCOPY | 3.41 | 121 | |
| 71 | 6RI5|1|x | Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles | ELECTRON MICROSCOPY | 3.3 | 121 | |
| 72 | 6QTZ|1|x | Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles | ELECTRON MICROSCOPY | 3.5 | 121 | |
| 73 | 6QT0|1|x | Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles | ELECTRON MICROSCOPY | 3.4 | 121 | |
| 74 | 5OBM|1|7 | Crystal structure of Gentamicin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.4 | 121 | |
| 75 | 5OBM|1|3 | Crystal structure of Gentamicin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.4 | 121 | |
| 76 | 6RZZ|1|x | Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles | ELECTRON MICROSCOPY | 3.2 | 121 | |
| 77 | 6QIK|1|x | Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles | ELECTRON MICROSCOPY | 3.1 | 121 | |
| 78 | 5T62|1|B | Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex | ELECTRON MICROSCOPY | 3.1 | 121 | |
| 79 | 6N8M|1|B | Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit | ELECTRON MICROSCOPY | 3.5 | 121 | |
| 80 | 6N8O|1|B | Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit | ELECTRON MICROSCOPY | 3.5 | 121 | |
| 81 | 6N8J|1|2 | Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit | ELECTRON MICROSCOPY | 3.5 | 121 | |
| 82 | 5H4P|1|3 | Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1 | ELECTRON MICROSCOPY | 3.07 | 121 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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