#IFECompound(s)RNA source organismTitleMethodResolutionDate
12ZM5|1|C (rep)tRNA(Phe)Escherichia coliCrystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe)X-RAY DIFFRACTION2.552009-04-14
22ZXU|1|CtRNA(Phe)Escherichia coliCrystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPPX-RAY DIFFRACTION2.752009-05-26
33FOZ|1|CtRNA(Phe)Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe)X-RAY DIFFRACTION2.52009-01-20
43L0U|1|AUnmodified tRNAPheThe crystal structure of unmodified tRNAPhe from Escherichia coliX-RAY DIFFRACTION32010-03-16
54V5E|1|AVE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNAEscherichia coliInsights into translational termination from the structure of RF2 bound to the ribosomeX-RAY DIFFRACTION3.452014-07-09
64V9D|1|BVphenylalanine specific transfer RNA, messenger RNAEscherichia coliStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION32014-07-09
73FOZ|1|DtRNA(Phe)Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe)X-RAY DIFFRACTION2.52009-01-20
84V5D|1|AVP AND A-SITE PHE-TRNA PHE, MRNAEscherichia coliStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-RAY DIFFRACTION3.52014-07-09
94V5D|1|CVP AND A-SITE PHE-TRNA PHE, MRNAEscherichia coliStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-RAY DIFFRACTION3.52014-07-09
104V9C|1|AVPhenylalanine specific transfer RNA, tRNA-Phe, Messenger RNA, mRNAEscherichia coliAllosteric control of the ribosome by small-molecule antibioticsX-RAY DIFFRACTION3.32014-07-09
114V5Q|1|AVE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.12014-07-09
124V5S|1|AVE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.12014-07-09
134V5L|1|AVE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliThe structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analogX-RAY DIFFRACTION3.12014-07-09
144V5P|1|AVE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliThe crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.12014-07-09
154V5P|1|CVE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliThe crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.12014-07-09
162ZM5|1|DtRNA(Phe)Escherichia coliCrystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe)X-RAY DIFFRACTION2.552009-04-14
174V6F|1|CCTRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37, MRNAEscherichia coliElongation complex of the 70S ribosome with three tRNAs and mRNA.X-RAY DIFFRACTION3.12014-07-09
184V5J|1|CVE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNAEscherichia coliStructure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide releaseX-RAY DIFFRACTION3.12014-07-09
194W2F|1|AWA/P-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.42014-10-15
205AFI|1|yA/T-site Phe-tRNAPhe, mRNAEscherichia coli2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.92015-03-11
214V5R|1|AVE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliThe crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.12014-07-09
224V5E|1|CVE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNAEscherichia coliInsights into translational termination from the structure of RF2 bound to the ribosomeX-RAY DIFFRACTION3.452014-07-09
234V5R|1|CVE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliThe crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.12014-07-09
244V5Q|1|CVE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.12014-07-09
252ZXU|1|DtRNA(Phe)Escherichia coliCrystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPPX-RAY DIFFRACTION2.752009-05-26
264V6F|1|BCTRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37, MRNAEscherichia coliElongation complex of the 70S ribosome with three tRNAs and mRNA.X-RAY DIFFRACTION3.12014-07-09
274V5S|1|CVE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.12014-07-09
284W2E|1|wP-site tRNA, mRNAEscherichia coliCrystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.92014-10-01
294V9H|1|AVPE hybrid state tRNA Phe, mRNAEscherichia coliCrystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase stateX-RAY DIFFRACTION2.862014-07-09
301VY5|1|AWA-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.552014-08-20
314WQU|1|BWP-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-RAY DIFFRACTION2.82015-01-28
324WQF|1|BWP-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-RAY DIFFRACTION2.82015-01-28
334WQU|1|DWP-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-RAY DIFFRACTION2.82015-01-28
344WQF|1|DWP-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-RAY DIFFRACTION2.82015-01-28
354V5J|1|AVE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNAEscherichia coliStructure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide releaseX-RAY DIFFRACTION3.12014-07-09
364W2I|1|AWA/P-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.72014-10-15
371VY4|1|AYE-site tRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.62014-08-20
384W2E|1|xE-site tRNAEscherichia coliCrystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.92014-10-01
394W2G|1|AWA/P-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.552014-10-15
401VY5|1|CWA-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.552014-08-20
414WPO|1|DWA-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-RAY DIFFRACTION2.82015-01-28
424V6F|1|CBTRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37, MRNAEscherichia coliElongation complex of the 70S ribosome with three tRNAs and mRNA.X-RAY DIFFRACTION3.12014-07-09
431VY4|1|AWA-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.62014-08-20
444V9D|1|AVphenylalanine specific transfer RNA, messenger RNAEscherichia coliStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION32014-07-09
454W2G|1|AYA/P-site tRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.552014-10-15
464W2F|1|AYA/P-site tRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.42014-10-15
474WQU|1|BYP-site tRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-RAY DIFFRACTION2.82015-01-28
484WPO|1|BYE-site tRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-RAY DIFFRACTION2.82015-01-28
494WQF|1|BYP-site tRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-RAY DIFFRACTION2.82015-01-28
501VY4|1|CWA-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.62014-08-20
514W2G|1|CWA/P-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.552014-10-15
524V6F|1|BBTRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37, MRNAEscherichia coliElongation complex of the 70S ribosome with three tRNAs and mRNA.X-RAY DIFFRACTION3.12014-07-09
534V6F|1|BDTRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37, MRNAEscherichia coliElongation complex of the 70S ribosome with three tRNAs and mRNA.X-RAY DIFFRACTION3.12014-07-09
544V6F|1|CDTRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37, MRNAEscherichia coliElongation complex of the 70S ribosome with three tRNAs and mRNA.X-RAY DIFFRACTION3.12014-07-09
554W2F|1|CYA/P-site tRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.42014-10-15
561VY4|1|CYE-site tRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.62014-08-20
574W2G|1|CYA/P-site tRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.552014-10-15
584V51|1|AWE-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES)Escherichia coliStructure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-RAY DIFFRACTION2.82014-07-09
591VY5|1|AYE-site tRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.552014-08-20
604W2I|1|AYA/P-site tRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.72014-10-15
614W2I|1|CWA/P-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.72014-10-15
624V9I|1|AWE-SITE tRNAEscherichia coliCrystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codonX-RAY DIFFRACTION3.32014-07-09
634V5D|1|AWE-SITE TRNA PHEEscherichia coliStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-RAY DIFFRACTION3.52014-07-09
644V5C|1|CWE-SITE TRNA PHEEscherichia coliStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-RAY DIFFRACTION3.32014-07-09
654WPO|1|BWA-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-RAY DIFFRACTION2.82015-01-28
664W2I|1|CYA/P-site tRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.72014-10-15
674WQU|1|DYP-site tRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-RAY DIFFRACTION2.82015-01-28
684WPO|1|DYE-site tRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-RAY DIFFRACTION2.82015-01-28
694WQF|1|DYP-site tRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-RAY DIFFRACTION2.82015-01-28
704W2F|1|CWA/P-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.42014-10-15
714V5D|1|CWE-SITE TRNA PHEEscherichia coliStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-RAY DIFFRACTION3.52014-07-09
724V51|1|CWE-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES)Escherichia coliStructure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-RAY DIFFRACTION2.82014-07-09
731VY5|1|CYE-site tRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.552014-08-20
744V5C|1|AWE-SITE TRNA PHEEscherichia coliStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-RAY DIFFRACTION3.32014-07-09
754V5Q|1|AWE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.12014-07-09
764V5E|1|CWE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES)Escherichia coliInsights into translational termination from the structure of RF2 bound to the ribosomeX-RAY DIFFRACTION3.452014-07-09
774V5P|1|AWE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliThe crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.12014-07-09
784V5R|1|AWE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliThe crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.12014-07-09
794V5P|1|CWE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliThe crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.12014-07-09
804V9I|1|CWE-SITE tRNAEscherichia coliCrystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codonX-RAY DIFFRACTION3.32014-07-09
814V5D|1|AYP AND A-SITE PHE-TRNA PHE, MRNAEscherichia coliStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-RAY DIFFRACTION3.52014-07-09
824V5J|1|CWE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES)Escherichia coliStructure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide releaseX-RAY DIFFRACTION3.12014-07-09
834V5D|1|CYP AND A-SITE PHE-TRNA PHE, MRNAEscherichia coliStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-RAY DIFFRACTION3.52014-07-09
844V5L|1|AWE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliThe structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analogX-RAY DIFFRACTION3.12014-07-09
854V9C|1|CVPhenylalanine specific transfer RNA, tRNA-Phe, Messenger RNA, mRNAEscherichia coliAllosteric control of the ribosome by small-molecule antibioticsX-RAY DIFFRACTION3.32014-07-09
864V5S|1|AWE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.12014-07-09
874V5R|1|CWE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliThe crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.12014-07-09
884V5C|1|CYA-SITE PHE-TRNA PHE, MRNAEscherichia coliStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-RAY DIFFRACTION3.32014-07-09
894V5J|1|AWE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES)Escherichia coliStructure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide releaseX-RAY DIFFRACTION3.12014-07-09
904V5Q|1|CWE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.12014-07-09
914W2H|1|AYE-site tRNA Acceptor StemEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-RAY DIFFRACTION2.72014-10-15
924V5E|1|AWE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES)Escherichia coliInsights into translational termination from the structure of RF2 bound to the ribosomeX-RAY DIFFRACTION3.452014-07-09
934V5C|1|AYA-SITE PHE-TRNA PHE, MRNAEscherichia coliStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-RAY DIFFRACTION3.32014-07-09
944V5S|1|CWE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.12014-07-09
951VY7|1|AYE-site tRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.82014-08-20
961VY7|1|CYE-site tRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.82014-08-20
974W2H|1|CYE-site tRNA Acceptor StemEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-RAY DIFFRACTION2.72014-10-15

Release history

Release2.14
Date2015-03-13

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15AFI|1|y2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.967
24V5J|1|AVStructure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide releaseX-RAY DIFFRACTION3.175
34V5J|1|CVStructure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide releaseX-RAY DIFFRACTION3.175
44V5E|1|AVInsights into translational termination from the structure of RF2 bound to the ribosomeX-RAY DIFFRACTION3.4576
54V5D|1|AVStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-RAY DIFFRACTION3.575
64V5E|1|CVInsights into translational termination from the structure of RF2 bound to the ribosomeX-RAY DIFFRACTION3.4576
74V5D|1|CVStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-RAY DIFFRACTION3.575
84V5S|1|CVThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.176
94V5L|1|AVThe structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analogX-RAY DIFFRACTION3.176
104V5R|1|AVThe crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.176
114V5R|1|CVThe crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.176
124V5P|1|CVThe crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.176
134V5P|1|AVThe crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.176
144V5Q|1|AVThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.176
154V5S|1|AVThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.176
164V5Q|1|CVThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.176
174V9C|1|AVAllosteric control of the ribosome by small-molecule antibioticsX-RAY DIFFRACTION3.376
184V9D|1|BVStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION376
194V6F|1|CCElongation complex of the 70S ribosome with three tRNAs and mRNA.X-RAY DIFFRACTION3.175
204V6F|1|BCElongation complex of the 70S ribosome with three tRNAs and mRNA.X-RAY DIFFRACTION3.175
214W2E|1|wCrystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.968
224WQU|1|DWCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-RAY DIFFRACTION2.869
234WQF|1|DWCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-RAY DIFFRACTION2.869
244WQU|1|BWCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-RAY DIFFRACTION2.869
254WQF|1|BWCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-RAY DIFFRACTION2.869
264V9C|1|CVAllosteric control of the ribosome by small-molecule antibioticsX-RAY DIFFRACTION3.376
273L0U|1|AThe crystal structure of unmodified tRNAPhe from Escherichia coliX-RAY DIFFRACTION373
284V6F|1|BBElongation complex of the 70S ribosome with three tRNAs and mRNA.X-RAY DIFFRACTION3.175
294V6F|1|CBElongation complex of the 70S ribosome with three tRNAs and mRNA.X-RAY DIFFRACTION3.175
304W2I|1|AWCrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.767
314WPO|1|BWCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-RAY DIFFRACTION2.866
321VY4|1|AWCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.666
331VY5|1|AWCrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.5566
344W2F|1|AWCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.467
354W2G|1|AWCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.5567
364W2I|1|CWCrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.765
374W2F|1|CWCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.465
384W2G|1|CWCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.5565
391VY5|1|CWCrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.5564
401VY4|1|CWCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.664
414WPO|1|DWCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-RAY DIFFRACTION2.864
424V5D|1|CYStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-RAY DIFFRACTION3.575
434V5D|1|AYStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-RAY DIFFRACTION3.575
444V5C|1|CYStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-RAY DIFFRACTION3.375
454V5C|1|AYStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-RAY DIFFRACTION3.375
461VY5|1|AYCrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.5567
471VY4|1|AYCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.667
484W2E|1|xCrystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.967
494WQF|1|BYCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-RAY DIFFRACTION2.867
504WQU|1|BYCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-RAY DIFFRACTION2.867
514WPO|1|BYCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-RAY DIFFRACTION2.867
524W2F|1|AYCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.467
534W2I|1|AYCrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.767
544W2G|1|AYCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.5567
554W2F|1|CYCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.466
564WPO|1|DYCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-RAY DIFFRACTION2.866
574WQF|1|DYCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-RAY DIFFRACTION2.866
584WQU|1|DYCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-RAY DIFFRACTION2.866
591VY4|1|CYCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.666
601VY5|1|CYCrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.5566
614W2I|1|CYCrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.766
624W2G|1|CYCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.5566
634W2H|1|AYCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-RAY DIFFRACTION2.718
644V5E|1|CWInsights into translational termination from the structure of RF2 bound to the ribosomeX-RAY DIFFRACTION3.4576
654V5C|1|CWStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-RAY DIFFRACTION3.376
664V5C|1|AWStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-RAY DIFFRACTION3.376
674V5D|1|CWStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-RAY DIFFRACTION3.576
684V5D|1|AWStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-RAY DIFFRACTION3.576
694V51|1|AWStructure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-RAY DIFFRACTION2.876
704V51|1|CWStructure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-RAY DIFFRACTION2.876
714V9I|1|AWCrystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codonX-RAY DIFFRACTION3.376
724V9I|1|CWCrystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codonX-RAY DIFFRACTION3.376
734V5E|1|AWInsights into translational termination from the structure of RF2 bound to the ribosomeX-RAY DIFFRACTION3.4576
744V5J|1|AWStructure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide releaseX-RAY DIFFRACTION3.175
754V5J|1|CWStructure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide releaseX-RAY DIFFRACTION3.175
764V5L|1|AWThe structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analogX-RAY DIFFRACTION3.176
774V5S|1|AWThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.176
784V5Q|1|AWThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.176
794V5P|1|AWThe crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.176
804V5P|1|CWThe crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.176
814V5R|1|CWThe crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.176
824V5R|1|AWThe crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.176
834V5S|1|CWThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.176
844V5Q|1|CWThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.176
854V6F|1|CDElongation complex of the 70S ribosome with three tRNAs and mRNA.X-RAY DIFFRACTION3.175
864V6F|1|BDElongation complex of the 70S ribosome with three tRNAs and mRNA.X-RAY DIFFRACTION3.175
874V9H|1|AVCrystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase stateX-RAY DIFFRACTION2.8674
884V9D|1|AVStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION376
892ZM5|1|DCrystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe)X-RAY DIFFRACTION2.5569
902ZXU|1|DCrystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPPX-RAY DIFFRACTION2.7569
913FOZ|1|CStructure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe)X-RAY DIFFRACTION2.574
922ZXU|1|CCrystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPPX-RAY DIFFRACTION2.7574
932ZM5|1|CCrystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe)X-RAY DIFFRACTION2.5574
944W2H|1|CYCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-RAY DIFFRACTION2.75
951VY7|1|AYCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.85
961VY7|1|CYCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.85
973FOZ|1|DStructure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe)X-RAY DIFFRACTION2.569