BGSU RNA Site

Equivalence class NR_3.5_20721.7 Obsolete

#IFECompound(s)RNA source organismTitleMethodResolutionDate
15E81|1|2K (rep)tRNA-fMet, mRNAThermus thermophilusStructure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pairX-RAY DIFFRACTION2.952016-01-27
25J8B|1|xP-site tRNA, mRNAThermus thermophilusCrystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.62016-05-25
34V95|1|AVP-site fMet-tRNA, mRNAThermus thermophilusCrystal structure of YAEJ bound to the 70S ribosomeX-RAY DIFFRACTION3.22014-07-09
44V7J|1|AvRNA (77-MER), RNA (5'-R(*GP*GP*CP*AP*AP*GP*GP*AP*GP*GP*UP*A*AP*AP*AP*AP*UP*GP*(OMU)P*(A2M)P*(OMG)P*AP*AP*AP*A)-3')Thermus thermophilusStructure of RelE nuclease bound to the 70S ribosome (precleavage state)X-RAY DIFFRACTION3.32014-07-09
54V9B|1|ACTRNA-FMET, MRNAThermus thermophilusCrystal Structure of the 70S ribosome with tigecycline.X-RAY DIFFRACTION3.12014-07-09
64V7J|1|BvRNA (77-MER), RNA (5'-R(*GP*GP*CP*AP*AP*GP*GP*AP*GP*GP*UP*A*AP*AP*AP*AP*UP*GP*(OMU)P*(A2M)P*(OMG)P*AP*AP*AP*A)-3')Thermus thermophilusStructure of RelE nuclease bound to the 70S ribosome (precleavage state)X-RAY DIFFRACTION3.32014-07-09
75E81|1|2LtRNA-fMet, mRNAThermus thermophilusStructure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pairX-RAY DIFFRACTION2.952016-01-27
84V9B|1|CCTRNA-FMET, MRNAThermus thermophilusCrystal Structure of the 70S ribosome with tigecycline.X-RAY DIFFRACTION3.12014-07-09
94V95|1|CVP-site fMet-tRNA, mRNAThermus thermophilusCrystal structure of YAEJ bound to the 70S ribosomeX-RAY DIFFRACTION3.22014-07-09
104WT8|1|C4P site trNA, mRNAThermus thermophilusCrystal Structure of bactobolin A bound to 70S ribosome-tRNA complexX-RAY DIFFRACTION3.42015-01-21
114V9A|1|ACTRNA-FMET, MRNAThermus thermophilusCrystal Structure of the 70S ribosome with tetracycline.X-RAY DIFFRACTION3.32014-07-09
124L47|1|XVP-site tRNA fMet, messenger RNA, A-site ASL SufA6Thermus thermophilusCrystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION3.222014-08-06
134L47|1|QVP-site tRNA fMet, messenger RNA, A-site ASL SufA6Thermus thermophilusCrystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION3.222014-08-06
144V9A|1|CCTRNA-FMET, MRNAThermus thermophilusCrystal Structure of the 70S ribosome with tetracycline.X-RAY DIFFRACTION3.32014-07-09
154V7J|1|AwRNA (77-MER)Thermus thermophilusStructure of RelE nuclease bound to the 70S ribosome (precleavage state)X-RAY DIFFRACTION3.32014-07-09
164V7J|1|BwRNA (77-MER)Thermus thermophilusStructure of RelE nuclease bound to the 70S ribosome (precleavage state)X-RAY DIFFRACTION3.32014-07-09
174V9B|1|CDTRNA-FMETThermus thermophilusCrystal Structure of the 70S ribosome with tigecycline.X-RAY DIFFRACTION3.12014-07-09
184V9B|1|ADTRNA-FMETThermus thermophilusCrystal Structure of the 70S ribosome with tigecycline.X-RAY DIFFRACTION3.12014-07-09
194V5A|1|AWTRNA-FMETThermus thermophilus,Escherichia coliStructure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMetX-RAY DIFFRACTION3.52014-07-09
204V5A|1|CWTRNA-FMETThermus thermophilus,Escherichia coliStructure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMetX-RAY DIFFRACTION3.52014-07-09
214V8X|1|AVtransfer RNA, 5'-R(*GP*GP*CP*AP*AP*GP*GP*AP*GP*GP*UP*AP*AP*AP *AP*AP*UP*G U2M A2M A2MP*AP*AP*AP*A)-3'Thermus thermophilusStructure of Thermus thermophilus ribosomeX-RAY DIFFRACTION3.352014-07-09
224V9N|1|CWP-site tRNA-fMet, messenger RNA (5'-R(*AP*AP*UP*GP*UP*AP*G)-3')Thermus thermophilusCrystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.X-RAY DIFFRACTION3.42014-07-09
234V8X|1|CVtransfer RNA, BACTERIAL TOXIN YOEBThermus thermophilusStructure of Thermus thermophilus ribosomeX-RAY DIFFRACTION3.352014-07-09
244V9N|1|AWP-site tRNA-fMet, messenger RNA (5'-R(*AP*AP*UP*GP*UP*AP*G)-3')Thermus thermophilusCrystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.X-RAY DIFFRACTION3.42014-07-09
254V8X|1|CWtransfer RNAThermus thermophilusStructure of Thermus thermophilus ribosomeX-RAY DIFFRACTION3.352014-07-09
264V8X|1|AWtransfer RNAThermus thermophilusStructure of Thermus thermophilus ribosomeX-RAY DIFFRACTION3.352014-07-09

Release history

Release3.233.243.253.263.273.283.293.303.313.32
Date2018-05-252018-06-012018-06-082018-06-152018-06-222018-06-292018-07-062018-07-132018-07-202018-07-27

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.5_20721.7NR_3.5_20721.63.23(26) 4L47|1|QV, 4V9A|1|AC, 4V9A|1|CC, 4V9B|1|AC, 4V9B|1|AD, 4V9B|1|CC, 4V9B|1|CD, 4V9N|1|AW, 4V9N|1|CW, 4WT8|1|C4, 5E81|1|2K, 5E81|1|2L, 4V95|1|CV, 4V95|1|AV, 4L47|1|XV, 4V5A|1|AW, 4V5A|1|CW, 4V7J|1|Av, 4V7J|1|Aw, 4V7J|1|Bv, 4V7J|1|Bw, 4V8X|1|AV, 4V8X|1|AW, 4V8X|1|CV, 4V8X|1|CW, 5J8B|1|x(0) (0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.5_20721.7NR_3.5_20721.83.33(26) 4L47|1|QV, 4V9A|1|AC, 4V9A|1|CC, 4V9B|1|AC, 4V9B|1|AD, 4V9B|1|CC, 4V9B|1|CD, 4V9N|1|AW, 4V9N|1|CW, 4WT8|1|C4, 5E81|1|2K, 5E81|1|2L, 4V95|1|CV, 4V95|1|AV, 4L47|1|XV, 4V5A|1|AW, 4V5A|1|CW, 4V7J|1|Av, 4V7J|1|Aw, 4V7J|1|Bv, 4V7J|1|Bw, 4V8X|1|AV, 4V8X|1|AW, 4V8X|1|CV, 4V8X|1|CW, 5J8B|1|x(0) (0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14V9B|1|ADCrystal Structure of the 70S ribosome with tigecycline.X-RAY DIFFRACTION3.177
24V9B|1|CDCrystal Structure of the 70S ribosome with tigecycline.X-RAY DIFFRACTION3.177
34V8X|1|CWStructure of Thermus thermophilus ribosomeX-RAY DIFFRACTION3.3577
44V7J|1|AwStructure of RelE nuclease bound to the 70S ribosome (precleavage state)X-RAY DIFFRACTION3.377
54V8X|1|AWStructure of Thermus thermophilus ribosomeX-RAY DIFFRACTION3.3577
64V7J|1|BwStructure of RelE nuclease bound to the 70S ribosome (precleavage state)X-RAY DIFFRACTION3.377
74V5A|1|CWStructure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMetX-RAY DIFFRACTION3.576
84V5A|1|AWStructure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMetX-RAY DIFFRACTION3.576
94V8X|1|CVStructure of Thermus thermophilus ribosomeX-RAY DIFFRACTION3.3577
104V8X|1|AVStructure of Thermus thermophilus ribosomeX-RAY DIFFRACTION3.3576
114V9N|1|CWCrystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.X-RAY DIFFRACTION3.477
124V9N|1|AWCrystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.X-RAY DIFFRACTION3.477
134V95|1|CVCrystal structure of YAEJ bound to the 70S ribosomeX-RAY DIFFRACTION3.277
144V7J|1|BvStructure of RelE nuclease bound to the 70S ribosome (precleavage state)X-RAY DIFFRACTION3.376
154V7J|1|AvStructure of RelE nuclease bound to the 70S ribosome (precleavage state)X-RAY DIFFRACTION3.376
164V95|1|AVCrystal structure of YAEJ bound to the 70S ribosomeX-RAY DIFFRACTION3.277
174L47|1|XVCrystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION3.2277
184L47|1|QVCrystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION3.2277
194WT8|1|C4Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complexX-RAY DIFFRACTION3.477
204V9A|1|CCCrystal Structure of the 70S ribosome with tetracycline.X-RAY DIFFRACTION3.377
214V9B|1|CCCrystal Structure of the 70S ribosome with tigecycline.X-RAY DIFFRACTION3.177
224V9B|1|ACCrystal Structure of the 70S ribosome with tigecycline.X-RAY DIFFRACTION3.177
234V9A|1|ACCrystal Structure of the 70S ribosome with tetracycline.X-RAY DIFFRACTION3.377
245E81|1|2KStructure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pairX-RAY DIFFRACTION2.9572
255J8B|1|xCrystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.673
265E81|1|2LStructure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pairX-RAY DIFFRACTION2.9572