Equivalence class NR_3.5_20721.7 Obsolete
| # | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
|---|---|---|---|---|---|---|---|
| 1 | 5E81|1|2K (rep) | tRNA-fMet, mRNA | Thermus thermophilus | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair | X-RAY DIFFRACTION | 2.95 | 2016-01-27 |
| 2 | 5J8B|1|x | P-site tRNA, mRNA | Thermus thermophilus | Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.6 | 2016-05-25 |
| 3 | 4V95|1|AV | P-site fMet-tRNA, mRNA | Thermus thermophilus | Crystal structure of YAEJ bound to the 70S ribosome | X-RAY DIFFRACTION | 3.2 | 2014-07-09 |
| 4 | 4V7J|1|Av | RNA (77-MER), RNA (5'-R(*GP*GP*CP*AP*AP*GP*GP*AP*GP*GP*UP*A*AP*AP*AP*AP*UP*GP*(OMU)P*(A2M)P*(OMG)P*AP*AP*AP*A)-3') | Thermus thermophilus | Structure of RelE nuclease bound to the 70S ribosome (precleavage state) | X-RAY DIFFRACTION | 3.3 | 2014-07-09 |
| 5 | 4V9B|1|AC | TRNA-FMET, MRNA | Thermus thermophilus | Crystal Structure of the 70S ribosome with tigecycline. | X-RAY DIFFRACTION | 3.1 | 2014-07-09 |
| 6 | 4V7J|1|Bv | RNA (77-MER), RNA (5'-R(*GP*GP*CP*AP*AP*GP*GP*AP*GP*GP*UP*A*AP*AP*AP*AP*UP*GP*(OMU)P*(A2M)P*(OMG)P*AP*AP*AP*A)-3') | Thermus thermophilus | Structure of RelE nuclease bound to the 70S ribosome (precleavage state) | X-RAY DIFFRACTION | 3.3 | 2014-07-09 |
| 7 | 5E81|1|2L | tRNA-fMet, mRNA | Thermus thermophilus | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair | X-RAY DIFFRACTION | 2.95 | 2016-01-27 |
| 8 | 4V9B|1|CC | TRNA-FMET, MRNA | Thermus thermophilus | Crystal Structure of the 70S ribosome with tigecycline. | X-RAY DIFFRACTION | 3.1 | 2014-07-09 |
| 9 | 4V95|1|CV | P-site fMet-tRNA, mRNA | Thermus thermophilus | Crystal structure of YAEJ bound to the 70S ribosome | X-RAY DIFFRACTION | 3.2 | 2014-07-09 |
| 10 | 4WT8|1|C4 | P site trNA, mRNA | Thermus thermophilus | Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex | X-RAY DIFFRACTION | 3.4 | 2015-01-21 |
| 11 | 4V9A|1|AC | TRNA-FMET, MRNA | Thermus thermophilus | Crystal Structure of the 70S ribosome with tetracycline. | X-RAY DIFFRACTION | 3.3 | 2014-07-09 |
| 12 | 4L47|1|XV | P-site tRNA fMet, messenger RNA, A-site ASL SufA6 | Thermus thermophilus | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome | X-RAY DIFFRACTION | 3.22 | 2014-08-06 |
| 13 | 4L47|1|QV | P-site tRNA fMet, messenger RNA, A-site ASL SufA6 | Thermus thermophilus | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome | X-RAY DIFFRACTION | 3.22 | 2014-08-06 |
| 14 | 4V9A|1|CC | TRNA-FMET, MRNA | Thermus thermophilus | Crystal Structure of the 70S ribosome with tetracycline. | X-RAY DIFFRACTION | 3.3 | 2014-07-09 |
| 15 | 4V7J|1|Aw | RNA (77-MER) | Thermus thermophilus | Structure of RelE nuclease bound to the 70S ribosome (precleavage state) | X-RAY DIFFRACTION | 3.3 | 2014-07-09 |
| 16 | 4V7J|1|Bw | RNA (77-MER) | Thermus thermophilus | Structure of RelE nuclease bound to the 70S ribosome (precleavage state) | X-RAY DIFFRACTION | 3.3 | 2014-07-09 |
| 17 | 4V9B|1|CD | TRNA-FMET | Thermus thermophilus | Crystal Structure of the 70S ribosome with tigecycline. | X-RAY DIFFRACTION | 3.1 | 2014-07-09 |
| 18 | 4V9B|1|AD | TRNA-FMET | Thermus thermophilus | Crystal Structure of the 70S ribosome with tigecycline. | X-RAY DIFFRACTION | 3.1 | 2014-07-09 |
| 19 | 4V5A|1|AW | TRNA-FMET | Escherichia coli | Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet | X-RAY DIFFRACTION | 3.5 | 2014-07-09 |
| 20 | 4V5A|1|CW | TRNA-FMET | Escherichia coli | Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet | X-RAY DIFFRACTION | 3.5 | 2014-07-09 |
| 21 | 4V8X|1|AV | transfer RNA, 5'-R(*GP*GP*CP*AP*AP*GP*GP*AP*GP*GP*UP*AP*AP*AP *AP*AP*UP*G U2M A2M A2MP*AP*AP*AP*A)-3' | Thermus thermophilus | Structure of Thermus thermophilus ribosome | X-RAY DIFFRACTION | 3.35 | 2014-07-09 |
| 22 | 4V9N|1|CW | P-site tRNA-fMet, messenger RNA (5'-R(*AP*AP*UP*GP*UP*AP*G)-3') | Thermus thermophilus | Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2. | X-RAY DIFFRACTION | 3.4 | 2014-07-09 |
| 23 | 4V8X|1|CV | transfer RNA, BACTERIAL TOXIN YOEB | Thermus thermophilus | Structure of Thermus thermophilus ribosome | X-RAY DIFFRACTION | 3.35 | 2014-07-09 |
| 24 | 4V9N|1|AW | P-site tRNA-fMet, messenger RNA (5'-R(*AP*AP*UP*GP*UP*AP*G)-3') | Thermus thermophilus | Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2. | X-RAY DIFFRACTION | 3.4 | 2014-07-09 |
| 25 | 4V8X|1|CW | transfer RNA | Thermus thermophilus | Structure of Thermus thermophilus ribosome | X-RAY DIFFRACTION | 3.35 | 2014-07-09 |
| 26 | 4V8X|1|AW | transfer RNA | Thermus thermophilus | Structure of Thermus thermophilus ribosome | X-RAY DIFFRACTION | 3.35 | 2014-07-09 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.5_20721.7 | NR_3.5_20721.6 | 3.23 | (26) 4L47|1|QV, 4V9A|1|AC, 4V9A|1|CC, 4V9B|1|AC, 4V9B|1|AD, 4V9B|1|CC, 4V9B|1|CD, 4V9N|1|AW, 4V9N|1|CW, 4WT8|1|C4, 5E81|1|2K, 5E81|1|2L, 4V95|1|CV, 4V95|1|AV, 4L47|1|XV, 4V5A|1|AW, 4V5A|1|CW, 4V7J|1|Av, 4V7J|1|Aw, 4V7J|1|Bv, 4V7J|1|Bw, 4V8X|1|AV, 4V8X|1|AW, 4V8X|1|CV, 4V8X|1|CW, 5J8B|1|x | (0) | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.5_20721.7 | NR_3.5_20721.8 | 3.33 | (26) 4L47|1|QV, 4V9A|1|AC, 4V9A|1|CC, 4V9B|1|AC, 4V9B|1|AD, 4V9B|1|CC, 4V9B|1|CD, 4V9N|1|AW, 4V9N|1|CW, 4WT8|1|C4, 5E81|1|2K, 5E81|1|2L, 4V95|1|CV, 4V95|1|AV, 4L47|1|XV, 4V5A|1|AW, 4V5A|1|CW, 4V7J|1|Av, 4V7J|1|Aw, 4V7J|1|Bv, 4V7J|1|Bw, 4V8X|1|AV, 4V8X|1|AW, 4V8X|1|CV, 4V8X|1|CW, 5J8B|1|x | (0) | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| # | Class_IFE | PDBID | Assembly | LSU_23S | LSU_5S | mRNA | tRNA/s | tRNA_Occupancy | A_tRNA_anticodon | Protein_factors |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4V9B|1|AD | Crystal Structure of the 70S ribosome with tigecycline. | X-RAY DIFFRACTION | 3.1 | 77 | |||||
| 2 | 4V9B|1|CD | Crystal Structure of the 70S ribosome with tigecycline. | X-RAY DIFFRACTION | 3.1 | 77 | |||||
| 3 | 4V8X|1|CW | Structure of Thermus thermophilus ribosome | X-RAY DIFFRACTION | 3.35 | 77 | |||||
| 4 | 4V7J|1|Aw | Structure of RelE nuclease bound to the 70S ribosome (precleavage state) | X-RAY DIFFRACTION | 3.3 | 77 | |||||
| 5 | 4V8X|1|AW | Structure of Thermus thermophilus ribosome | X-RAY DIFFRACTION | 3.35 | 77 | |||||
| 6 | 4V7J|1|Bw | Structure of RelE nuclease bound to the 70S ribosome (precleavage state) | X-RAY DIFFRACTION | 3.3 | 77 | |||||
| 7 | 4V5A|1|CW | Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet | X-RAY DIFFRACTION | 3.5 | 76 | |||||
| 8 | 4V5A|1|AW | Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet | X-RAY DIFFRACTION | 3.5 | 76 | |||||
| 9 | 4V8X|1|CV | Structure of Thermus thermophilus ribosome | X-RAY DIFFRACTION | 3.35 | 77 | |||||
| 10 | 4V8X|1|AV | Structure of Thermus thermophilus ribosome | X-RAY DIFFRACTION | 3.35 | 76 | |||||
| 11 | 4V9N|1|CW | Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2. | X-RAY DIFFRACTION | 3.4 | 77 | |||||
| 12 | 4V9N|1|AW | Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2. | X-RAY DIFFRACTION | 3.4 | 77 | |||||
| 13 | 4V95|1|CV | Crystal structure of YAEJ bound to the 70S ribosome | X-RAY DIFFRACTION | 3.2 | 77 | |||||
| 14 | 4V7J|1|Bv | Structure of RelE nuclease bound to the 70S ribosome (precleavage state) | X-RAY DIFFRACTION | 3.3 | 76 | |||||
| 15 | 4V7J|1|Av | Structure of RelE nuclease bound to the 70S ribosome (precleavage state) | X-RAY DIFFRACTION | 3.3 | 76 | |||||
| 16 | 4V95|1|AV | Crystal structure of YAEJ bound to the 70S ribosome | X-RAY DIFFRACTION | 3.2 | 77 | |||||
| 17 | 4L47|1|XV | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome | X-RAY DIFFRACTION | 3.22 | 77 | |||||
| 18 | 4L47|1|QV | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome | X-RAY DIFFRACTION | 3.22 | 77 | |||||
| 19 | 4WT8|1|C4 | Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex | X-RAY DIFFRACTION | 3.4 | 77 | |||||
| 20 | 4V9A|1|CC | Crystal Structure of the 70S ribosome with tetracycline. | X-RAY DIFFRACTION | 3.3 | 77 | |||||
| 21 | 4V9B|1|CC | Crystal Structure of the 70S ribosome with tigecycline. | X-RAY DIFFRACTION | 3.1 | 77 | |||||
| 22 | 4V9B|1|AC | Crystal Structure of the 70S ribosome with tigecycline. | X-RAY DIFFRACTION | 3.1 | 77 | |||||
| 23 | 4V9A|1|AC | Crystal Structure of the 70S ribosome with tetracycline. | X-RAY DIFFRACTION | 3.3 | 77 | |||||
| 24 | 5E81|1|2K | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair | X-RAY DIFFRACTION | 2.95 | 72 | |||||
| 25 | 5J8B|1|x | Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.6 | 73 | |||||
| 26 | 5E81|1|2L | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair | X-RAY DIFFRACTION | 2.95 | 72 |