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Equivalence class NR_3.5_21280.8 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16R5Q|1|K (rep)Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of XBP1u-paused ribosome nascent chain complex (post-state)Electron microscopy32019-07-10
26P5I|1|2Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)Electron microscopy3.12019-09-18
36P5K|1|2Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)Electron microscopy3.12019-09-18
46P5J|1|2Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)Electron microscopy3.12019-09-18
56P4G|1|2Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1)Electron microscopy3.12019-09-18
66R6P|1|KSmall subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Structure of XBP1u-paused ribosome nascent chain complex (rotated state)Electron microscopy3.12019-07-10
76P4H|1|2Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)Electron microscopy3.22019-09-18
86D9J|1|2Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.Electron microscopy3.22018-06-06
95LZS|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BElectron microscopy3.312016-11-30
101VX5|1|218S ribosomal RNAStructure of the 80S mammalian ribosome bound to eEF2. This entry contains the small ribosomal subunit.Electron microscopy3.52014-06-18
113J74|1|S218S ribosomal RNAStructure of the 80S mammalian ribosome bound to eEF2Electron microscopy3.52014-06-18
126MTD|1|9Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)Electron microscopy3.32018-11-21
135LZV|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.Electron microscopy3.352016-11-30
146D90|1|2Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.Electron microscopy3.22018-06-06
156MTC|1|9Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)Electron microscopy3.42018-11-21
166MTE|1|9Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)Electron microscopy3.42018-11-21
176GZ5|1|B1Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)Electron microscopy3.52018-12-05
185LZZ|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)Electron microscopy3.472016-11-30
193JAH|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonElectron microscopy3.452015-08-12

Release history

Release3.92
Date2019-09-19

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.5_21280.8NR_3.5_21280.73.92(14) 3JAH|1|9, 6GZ5|1|B1, 3J74|1|S2, 6D9J|1|2, 6R6P|1|K, 1VX5|1|2, 6D90|1|2, 6R5Q|1|K, 5LZZ|1|9, 6MTE|1|9, 5LZV|1|9, 6MTD|1|9, 5LZS|1|9, 6MTC|1|9(5) 6P4G|1|2, 6P5I|1|2, 6P5K|1|2, 6P4H|1|2, 6P5J|1|2(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.5_21280.8NR_3.5_21280.93.93(19) 6D90|1|2, 5LZZ|1|9, 5LZV|1|9, 5LZS|1|9, 3JAH|1|9, 6R6P|1|K, 3J74|1|S2, 6R5Q|1|K, 1VX5|1|2, 6P5K|1|2, 6P5J|1|2, 6P5I|1|2, 6P4H|1|2, 6P4G|1|2, 6MTE|1|9, 6MTD|1|9, 6MTC|1|9, 6GZ5|1|B1, 6D9J|1|2(0) (1) 6P5N|1|2

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
13JAH|1|9Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonELECTRON MICROSCOPY3.451719
26GZ5|1|B1tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)ELECTRON MICROSCOPY3.51708
36D90|1|2Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.ELECTRON MICROSCOPY3.21697
46R5Q|1|KStructure of XBP1u-paused ribosome nascent chain complex (post-state)ELECTRON MICROSCOPY31698
56MTC|1|9Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)ELECTRON MICROSCOPY3.41664
65LZZ|1|9Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)ELECTRON MICROSCOPY3.471698
75LZV|1|9Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.ELECTRON MICROSCOPY3.351698
85LZS|1|9Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.311697
96R6P|1|KStructure of XBP1u-paused ribosome nascent chain complex (rotated state)ELECTRON MICROSCOPY3.11698
106P4H|1|2Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)ELECTRON MICROSCOPY3.21697
116P4G|1|2Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1)ELECTRON MICROSCOPY3.11697
126P5K|1|2Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)ELECTRON MICROSCOPY3.11697
136P5I|1|2Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)ELECTRON MICROSCOPY3.11697
146P5J|1|2Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)ELECTRON MICROSCOPY3.11697
156MTE|1|9Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)ELECTRON MICROSCOPY3.41664
166MTD|1|9Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)ELECTRON MICROSCOPY3.31692
176D9J|1|2Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.ELECTRON MICROSCOPY3.21697
183J74|1|S2Structure of the 80S mammalian ribosome bound to eEF2ELECTRON MICROSCOPY3.51742
191VX5|1|2Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the small ribosomal subunit.ELECTRON MICROSCOPY3.51742
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