Equivalence class NR_3.5_21736.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4OQ9|1|z (rep) | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 2 | 4NIA|1|1 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 3 | 4OQ9|1|1 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 4 | 4NIA|1|2 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 5 | 4OQ9|1|2 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 6 | 4NIA|1|3 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 7 | 4OQ9|1|3 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 8 | 4NIA|1|4 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 9 | 4OQ9|1|4 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 10 | 4NIA|1|5 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 11 | 4OQ9|1|5 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 12 | 4NIA|1|6 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 13 | 4OQ9|1|6 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 14 | 4NIA|1|7 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 15 | 4OQ9|1|7 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 16 | 4NIA|1|8 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 17 | 4OQ9|1|8 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 18 | 3ER9|1|D | 5'-R(UP*U)-3' | Crystal structure of the heterodimeric vaccinia virus mRNA polyadenylate polymerase complex with UU and 3'-deoxy ATP | X-ray diffraction | 2.06 | 2009-06-16 | ||||
| 19 | 4OQ8|1|D | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using icosahedral constraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 20 | 2VRT|1|E | 5'-R(*UP*UP)-3' | Escherichia coli | Bacteria | Crystal Structure of E. coli RNase E possessing M1 RNA fragments - Catalytic Domain | X-ray diffraction | 3.5 | 2008-07-22 | ||
| 21 | 1DDL|1|E | RNA (5'-R(P*UP*U)-3') | DESMODIUM YELLOW MOTTLE TYMOVIRUS | X-ray diffraction | 2.7 | 2000-10-30 | ||||
| 22 | 2VRT|1|F | 5'-R(*UP*UP)-3' | Escherichia coli | Bacteria | Crystal Structure of E. coli RNase E possessing M1 RNA fragments - Catalytic Domain | X-ray diffraction | 3.5 | 2008-07-22 | ||
| 23 | 5KAL|1|Y | RNA (5'-R(*UP*U)-3') | Trypanosoma brucei | Eukarya | Terminal uridylyl transferase 4 from Trypanosoma brucei with bound UTP and UpU | X-ray diffraction | 2.75 | 2016-10-26 | ||
| 24 | 5KAL|1|Z | RNA (5'-R(*UP*U)-3') | Trypanosoma brucei | Eukarya | Terminal uridylyl transferase 4 from Trypanosoma brucei with bound UTP and UpU | X-ray diffraction | 2.75 | 2016-10-26 | ||
| 25 | 4NIA|1|t | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 26 | 4OQ9|1|t | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 27 | 4NIA|1|u | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 28 | 4OQ9|1|u | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 29 | 4NIA|1|v | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 30 | 4OQ9|1|v | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 31 | 4NIA|1|w | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 32 | 4OQ9|1|w | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 33 | 4NIA|1|x | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 34 | 4OQ9|1|x | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 35 | 4NIA|1|y | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 36 | 4OQ9|1|y | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 37 | 4NIA|1|z | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 |
Release history
| Release | 2.99 | 2.100 | 2.101 | 2.102 | 2.103 | 2.104 | 2.105 | 2.106 | 2.107 | 2.108 | 2.109 | 2.110 | 2.111 | 2.112 | 2.113 | 2.114 | 2.115 | 2.116 | 2.117 | 2.118 | 2.119 | 2.120 | 2.121 | 2.122 | 2.123 | 2.124 | 2.125 | 2.126 | 2.127 | 2.128 | 2.129 | 2.130 | 2.131 | 2.132 | 2.133 | 2.134 | 2.135 | 2.136 | 2.137 | 2.138 | 2.139 | 2.140 | 2.141 | 2.142 | 2.143 | 2.144 | 2.145 | 2.146 | 2.147 | 2.148 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2016-10-28 | 2016-11-04 | 2016-11-11 | 2016-11-18 | 2016-11-25 | 2016-12-02 | 2016-12-09 | 2016-12-16 | 2016-12-23 | 2016-12-30 | 2017-01-06 | 2017-01-13 | 2017-01-20 | 2017-01-27 | 2017-02-03 | 2017-02-10 | 2017-02-17 | 2017-02-24 | 2017-03-03 | 2017-03-10 | 2017-03-17 | 2017-03-24 | 2017-03-31 | 2017-04-11 | 2017-04-15 | 2017-04-26 | 2017-04-29 | 2017-05-09 | 2017-05-15 | 2017-05-20 | 2017-05-27 | 2017-06-07 | 2017-06-11 | 2017-06-21 | 2017-06-24 | 2017-06-28 | 2017-07-04 | 2017-07-10 | 2017-07-15 | 2017-07-26 | 2017-07-31 | 2017-08-05 | 2017-08-12 | 2017-08-19 | 2017-08-26 | 2017-09-03 | 2017-09-09 | 2017-09-16 | 2017-09-23 | 2017-09-30 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.5_21736.3 | NR_3.5_21736.2 | 2.99 | (35) 4OQ9|1|x, 1DDL|1|E, 4NIA|1|x, 4OQ9|1|w, 4NIA|1|w, 4OQ9|1|v, 4NIA|1|v, 4OQ9|1|u, 4NIA|1|u, 4OQ9|1|t, 4NIA|1|t, 4OQ9|1|8, 4NIA|1|8, 4NIA|1|7, 4OQ9|1|7, 4NIA|1|6, 4OQ9|1|6, 4NIA|1|5, 4OQ9|1|5, 4NIA|1|4, 4OQ9|1|4, 4NIA|1|3, 4OQ9|1|3, 4NIA|1|2, 4OQ9|1|2, 4NIA|1|1, 4OQ9|1|1, 3ER9|1|D, 4OQ8|1|D, 4OQ9|1|z, 2VRT|1|F, 4NIA|1|z, 4OQ9|1|y, 2VRT|1|E, 4NIA|1|y | (2) 5KAL|1|Y, 5KAL|1|Z | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.5_21736.3 | NR_3.5_21736.4 | 2.149 | (37) 4OQ9|1|5, 4NIA|1|5, 4OQ9|1|4, 4NIA|1|4, 4OQ9|1|3, 4NIA|1|3, 4OQ9|1|2, 4NIA|1|2, 4OQ9|1|1, 5KAL|1|Z, 4NIA|1|1, 4OQ8|1|D, 5KAL|1|Y, 3ER9|1|D, 4NIA|1|z, 4OQ9|1|z, 2VRT|1|F, 4NIA|1|y, 4OQ9|1|y, 2VRT|1|E, 4NIA|1|x, 4OQ9|1|x, 1DDL|1|E, 4NIA|1|w, 4OQ9|1|w, 4NIA|1|v, 4OQ9|1|v, 4OQ9|1|u, 4NIA|1|u, 4OQ9|1|t, 4NIA|1|t, 4OQ9|1|8, 4NIA|1|8, 4OQ9|1|7, 4NIA|1|7, 4OQ9|1|6, 4NIA|1|6 | (0) | (1) 5NEW|1|C |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 1DDL|1|E | DESMODIUM YELLOW MOTTLE TYMOVIRUS | X-RAY DIFFRACTION | 2.7 | 2 |
| 2 | 4NIA|1|7 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 3 | 4NIA|1|8 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 4 | 4NIA|1|y | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 5 | 4OQ9|1|8 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 6 | 4NIA|1|u | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 7 | 4OQ9|1|7 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 8 | 4OQ9|1|y | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 9 | 4OQ9|1|z | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 10 | 4OQ9|1|4 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 11 | 4NIA|1|z | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 12 | 4NIA|1|4 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 13 | 4NIA|1|1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 14 | 4OQ9|1|5 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 15 | 4OQ9|1|1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 16 | 2VRT|1|E | Crystal Structure of E. coli RNase E possessing M1 RNA fragments - Catalytic Domain | X-RAY DIFFRACTION | 3.5 | 2 |
| 17 | 2VRT|1|F | Crystal Structure of E. coli RNase E possessing M1 RNA fragments - Catalytic Domain | X-RAY DIFFRACTION | 3.5 | 2 |
| 18 | 4NIA|1|6 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 19 | 4NIA|1|5 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 20 | 4OQ9|1|u | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 21 | 3ER9|1|D | Crystal structure of the heterodimeric vaccinia virus mRNA polyadenylate polymerase complex with UU and 3'-deoxy ATP | X-RAY DIFFRACTION | 2.06 | 2 |
| 22 | 4OQ9|1|6 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 23 | 4NIA|1|2 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 24 | 4OQ9|1|t | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 25 | 4NIA|1|3 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 26 | 4NIA|1|t | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 27 | 4OQ9|1|2 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 28 | 5KAL|1|Z | Terminal uridylyl transferase 4 from Trypanosoma brucei with bound UTP and UpU | X-RAY DIFFRACTION | 2.75 | 2 |
| 29 | 4NIA|1|v | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 30 | 4NIA|1|x | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 31 | 4OQ9|1|w | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 32 | 4OQ9|1|v | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 33 | 5KAL|1|Y | Terminal uridylyl transferase 4 from Trypanosoma brucei with bound UTP and UpU | X-RAY DIFFRACTION | 2.75 | 2 |
| 34 | 4OQ9|1|3 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 35 | 4OQ8|1|D | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using icosahedral constraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 36 | 4OQ9|1|x | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 37 | 4NIA|1|w | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |