Equivalence class NR_3.5_25735.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1PJG|1|A (rep) | 5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3' | RNA/DNA Hybrid Decamer of CAAAGAAAAG/CTTTTCTTTG | X-ray diffraction | 1.15 | 2003-12-09 | ||||
| 2 | 1PJO|1|A | 5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3' | Crystal Structure of an RNA/DNA hybrid of HIV-1 PPT | X-ray diffraction | 1.1 | 2003-12-09 | ||||
| 3 | 1G4Q|1|A | 5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3' | RNA/DNA HYBRID DECAMER OF CAAAGAAAAG/CTTTTCTTTG | X-ray diffraction | 1.15 | 2003-07-08 | ||||
| 4 | 7OOO|1|A | RNA (5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3') | synthetic construct | Synthetic | The crystal structure of a DNA:RNA hybrid duplex sequence CTTTTCTTTG containing an LNA-Amide-LNA modification | X-ray diffraction | 2.57 | 2022-08-03 | ||
| 5 | 7OOO|1|D | RNA (5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3') | synthetic construct | Synthetic | The crystal structure of a DNA:RNA hybrid duplex sequence CTTTTCTTTG containing an LNA-Amide-LNA modification | X-ray diffraction | 2.57 | 2022-08-03 | ||
| 6 | 1JB8|1|A | 5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3' | The Crystal Structure of an RNA/DNA Hybrid Reveals Novel Intermolecular Intercalation | X-ray diffraction | 2.38 | 2003-07-01 | ||||
| 7 | 7NRP|1|A | RNA (5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3') | synthetic construct | Synthetic | The crystal structure of a DNA:RNA hybrid duplex sequence CTTTTCTTTG | X-ray diffraction | 2.67 | 2022-06-22 | ||
| 8 | 7OOS|1|A | RNA (5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3') | synthetic construct | Synthetic | The crystal structure of a DNA:RNA hybrid duplex sequence CTTTTCTTTG | X-ray diffraction | 2.6 | 2022-08-03 | ||
| 9 | 7OZZ|1|A | RNA (5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3') | synthetic construct | Synthetic | The crystal structure of a DNA:RNA hybrid duplex sequence CTTTTCTTTG with LNA-amide modification | X-ray diffraction | 2.7 | 2022-08-03 |
Release history
| Release | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 7OOS|1|A | The crystal structure of a DNA:RNA hybrid duplex sequence CTTTTCTTTG | X-RAY DIFFRACTION | 2.6 | 10 |
| 2 | 7NRP|1|A | The crystal structure of a DNA:RNA hybrid duplex sequence CTTTTCTTTG | X-RAY DIFFRACTION | 2.67 | 10 |
| 3 | 7OZZ|1|A | The crystal structure of a DNA:RNA hybrid duplex sequence CTTTTCTTTG with LNA-amide modification | X-RAY DIFFRACTION | 2.7 | 10 |
| 4 | 7OOO|1|A | The crystal structure of a DNA:RNA hybrid duplex sequence CTTTTCTTTG containing an LNA-Amide-LNA modification | X-RAY DIFFRACTION | 2.57 | 10 |
| 5 | 7OOO|1|D | The crystal structure of a DNA:RNA hybrid duplex sequence CTTTTCTTTG containing an LNA-Amide-LNA modification | X-RAY DIFFRACTION | 2.57 | 10 |
| 6 | 1PJO|1|A | Crystal Structure of an RNA/DNA hybrid of HIV-1 PPT | X-RAY DIFFRACTION | 1.1 | 14 |
| 7 | 1G4Q|1|A | RNA/DNA HYBRID DECAMER OF CAAAGAAAAG/CTTTTCTTTG | X-RAY DIFFRACTION | 1.15 | 10 |
| 8 | 1PJG|1|A | RNA/DNA Hybrid Decamer of CAAAGAAAAG/CTTTTCTTTG | X-RAY DIFFRACTION | 1.15 | 14 |
| 9 | 1JB8|1|A | The Crystal Structure of an RNA/DNA Hybrid Reveals Novel Intermolecular Intercalation | X-RAY DIFFRACTION | 2.38 | 10 |