Equivalence class NR_3.5_27790.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8BF8|1|B (rep) | Deinococcus radiodurans R1 chromosome 1 | Deinococcus radiodurans R1 | ISDra2 TnpB in complex with reRNA | Electron microscopy | 2.8 | 2023-04-12 | |||
| 2 | 8EX9|1|B | RNA (150-MER) | Deinococcus radiodurans R1 | Bacteria | ISDra2 TnpB in complex with reRNA and cognate DNA, conformation 2 (RuvC domain unresolved) | Electron microscopy | 2.96 | 2023-04-05 | ||
| 3 | 8H1J|1|B | omegaRNA (130-MER) | Deinococcus radiodurans R1 | Cryo-EM structure of the TnpB-omegaRNA-target DNA ternary complex | Electron microscopy | 3.1 | 2023-04-12 | |||
| 4 | 8EXA|1|B | RNA (150-MER) | Deinococcus radiodurans R1 | Bacteria | ISDra2 TnpB in complex with reRNA and cognate DNA, conformation 1 (RuvC domain resolved) | Electron microscopy | 3.14 | 2023-04-05 |
Release history
| Release | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 8EXA|1|B | ISDra2 TnpB in complex with reRNA and cognate DNA, conformation 1 (RuvC domain resolved) | ELECTRON MICROSCOPY | 3.14 | 101 |
| 2 | 8EX9|1|B | ISDra2 TnpB in complex with reRNA and cognate DNA, conformation 2 (RuvC domain unresolved) | ELECTRON MICROSCOPY | 2.96 | 102 |
| 3 | 8BF8|1|B | ISDra2 TnpB in complex with reRNA | ELECTRON MICROSCOPY | 2.8 | 111 |
| 4 | 8H1J|1|B | Cryo-EM structure of the TnpB-omegaRNA-target DNA ternary complex | ELECTRON MICROSCOPY | 3.1 | 102 |