#PDBTitleRNA source organismCompoundsMethodResolutionDate
13U5F|6 (rep)The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 40S subunit, ribosome BSaccharomyces cerevisiae18S rRNAX-RAY DIFFRACTION32011-12-21
23IZE|AModel of the small subunit RNA based on a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosomeSaccharomyces cerevisiae18S rRNA, P-SITE TRNA ASP, MRNA, RNA (5'-R(P*AP*AP*AP*AP*GP*AP*CP*UP*UP*CP*A)-3')ELECTRON MICROSCOPY8.82010-12-01
33O2Z|1Yeast 80S ribosome. This entry consists of the 40S subunit of the first 80S in the asymmetric unit.Saccharomyces cerevisiae18S ribosomal RNA, 40S ribosomal protein S0-A, 40S ribosomal protein S2, 40S ribosomal protein S3, 40S ribosomal protein S5, 40S ribosomal protein S9-A, 40S ribosomal protein S11, 40S ribosomal protein S13, 40S ribosomal protein S14-A, 40S ribosomal protein S15, 40S ribosomal protein S16, 40S ribosomal protein S17-A, 40S ribosomal protein S18, 40S ribosomal protein S19-A, 40S ribosomal protein S20, 40S ribosomal protein S22-A, 40S ribosomal protein S23, 40S ribosomal protein S25-A, 40S ribosomal protein S28-A, 40S ribosomal protein S29-A, Guanine nucleotide-binding protein subunit beta-like protein; RACK-1, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structureX-RAY DIFFRACTION42010-12-15
43O30|1Yeast 80S ribosome. This entry consists of the 40S subunit of the second 80S in the asymmetric unit.Saccharomyces cerevisiae18S ribosomal RNA, 40S ribosomal protein S0-A, 40S ribosomal protein S2, 40S ribosomal protein S3, 40S ribosomal protein S5, 40S ribosomal protein S9-A, 40S ribosomal protein S11, 40S ribosomal protein S13, 40S ribosomal protein S14-A, 40S ribosomal protein S15, 40S ribosomal protein S16, 40S ribosomal protein S17-A, 40S ribosomal protein S18, 40S ribosomal protein S19-A, 40S ribosomal protein S20, 40S ribosomal protein S22-A, 40S ribosomal protein S23, 40S ribosomal protein S25-A, 40S ribosomal protein S28-A, 40S ribosomal protein S29-A, Guanine nucleotide-binding protein subunit beta-like protein; RACK-1, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structure, Unassigned secondary structureX-RAY DIFFRACTION42010-12-15
53U5B|2The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 40S subunit, ribosome ASaccharomyces cerevisiae18S RIBOSOMAL RNAX-RAY DIFFRACTION32011-12-21
64BYO|2Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexSACCHAROMYCES CEREVISIAE18S RIBOSOMAL RNAELECTRON MICROSCOPY4.32013-11-20
74BYV|2Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexSACCHAROMYCES CEREVISIAE18S RIBOSOMAL RNAELECTRON MICROSCOPY6.62013-11-20

Release history

Release1.371.381.391.401.411.421.431.441.451.461.471.481.491.501.511.521.531.541.551.561.571.581.591.601.611.621.631.64
Date2013-11-232013-11-302013-12-072013-12-142013-12-212013-12-282014-01-042014-01-112014-01-182014-01-252014-02-012014-02-082014-02-152014-02-222014-03-012014-03-082014-03-172014-03-222014-03-292014-04-052014-04-122014-04-192014-04-262014-05-032014-05-102014-05-172014-05-312014-06-07

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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength