BGSU RNA Site //

Equivalence class NR_3.5_33014.4 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
16LQP|1|SA+ 6LQP|1|5A+ 6LQP|1|3A (rep)Small subunit ribosomal RNA + U3 small nucleolar RNA18S pre-rRNA, 5' ETS, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960 + RF01846Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)Electron microscopy3.22020-09-16
26KE6|1|SA+ 6KE6|1|5A+ 6KE6|1|3ASmall subunit ribosomal RNA + U3 small nucleolar RNA18S rRNA, 5' ETS, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960 + RF018463.4 angstrom cryo-EM structure of yeast 90S small subunit preribosomeElectron microscopy3.42020-08-05
36ZQG|1|D3Small subunit ribosomal RNA18S rRNA, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-CElectron microscopy3.52020-09-23

Release history

Release3.1993.2003.2013.2023.2033.2043.2053.2063.2073.2083.2093.2103.2113.2123.2133.2143.2153.2163.2173.2183.2193.2203.2213.2223.2233.2243.2253.2263.2273.2283.2293.230
Date2021-10-062021-10-132021-10-202021-10-272021-11-032021-11-102021-11-172021-11-242021-12-012021-12-082021-12-152021-12-222021-12-292022-01-052022-01-122022-01-192022-01-262022-02-022022-02-092022-02-162022-02-232022-03-022022-03-092022-03-162022-03-232022-03-302022-04-062022-04-132022-04-202022-04-272022-05-042022-05-11

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.5_33014.4NR_3.5_33014.33.199(3) 6KE6|1|SA+6KE6|1|5A+6KE6|1|3A, 6LQP|1|SA+6LQP|1|5A+6LQP|1|3A, 6ZQG|1|D3(0) (0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.5_33014.4NR_3.5_03510.443.231(3) 6KE6|1|SA+6KE6|1|5A+6KE6|1|3A, 6ZQG|1|D3, 6LQP|1|SA+6LQP|1|5A+6LQP|1|3A(0) (95) 5NDV|1|6, 5DGF|1|2, 5OBM|1|2, 6S47|1|BA, 5ON6|1|6, 6SNT|1|2, 7B7D|1|2, 6SV4|1|2b, 4U3U|1|6, 7MPJ|1|B5, 4U4N|1|2, 7N8B|1|B5, 4U51|1|6, 4U4Q|1|2, 4U52|1|2, 5DC3|1|6, 4U53|1|2, 5DGE|1|2, 5NDV|1|2, 5DGE|1|6, 6RBD|1|2, 5OBM|1|6, 7A1G|1|2, 6SV4|1|2, 4U3U|1|2, 7MPI|1|B5, 4U51|1|2, 4U4N|1|6, 5DC3|1|2, 4U52|1|6, 5MEI|1|A, 6Q8Y|1|2, 6ZVI|1|h, 4U3N|1|6, 4U50|1|6, 5DAT|1|6, 5MEI|1|6, 6HHQ|1|sR, 6Z6K|1|C2, 4U3N|1|2, 4U50|1|2, 5DAT|1|2, 5M1J|1|22, 6HHQ|1|A, 6Z6J|1|C2, 4U3M|1|6, 4U4Z|1|6, 4V88|1|A6, 5LYB|1|6, 6FAI|1|2, 6XIR|1|2, 4U3M|1|2, 4U4Z|1|2, 4V88|1|A2, 5TGM|1|6, 6WOO|1|2, 4U4Y|1|6, 4U6F|1|6, 5LYB|1|2, 5TGM|1|2, 6TNU|1|2, 7RR5|1|C2, 4U4Y|1|2, 4U6F|1|2, 5JUP|1|A, 5TGA|1|6, 6TB3|1|2, 7Q0P|1|A, 4U4U|1|6, 4U56|1|6, 5I4L|1|6, 5TGA|1|2, 6T7T|1|C2, 7Q0F|1|A, 4U4U|1|2, 4U56|1|2, 5I4L|1|2, 5TBW|1|sR, 6T7I|1|C2, 7PZY|1|A, 4U4R|1|6, 4U55|1|6, 5DGV|1|6, 5TBW|1|A, 6T4Q|1|C2, 7OSM|1|18S, 4U4R|1|2, 4U55|1|2, 5DGV|1|2, 5ON6|1|A, 6SV4|1|2c, 7OSA|1|18S, 4U4Q|1|6, 4U53|1|6, 5DGF|1|6

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16LQP|1|SA+6LQP|1|5A+6LQP|1|3ACryo-EM structure of 90S small subunit preribosomes in transition states (State A)ELECTRON MICROSCOPY3.21325
26KE6|1|SA+6KE6|1|5A+6KE6|1|3A3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosomeELECTRON MICROSCOPY3.41310
36ZQG|1|D3Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-CELECTRON MICROSCOPY3.51387