NR_3.5_35542.6

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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	4V9R\|1\|AX (rep)	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome	X-ray diffraction	3	2014-07-09
2	4V9S\|1\|AX	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of antibiotic GE82832 bound to 70S ribosome	X-ray diffraction	3.1	2014-07-09
3	4V9R\|1\|CX	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome	X-ray diffraction	3	2014-07-09
4	4V9S\|1\|CX	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of antibiotic GE82832 bound to 70S ribosome	X-ray diffraction	3.1	2014-07-09
5	4V7M\|1\|AX	Transfer RNA	tRNA-Met, RNA (5'-R(APAPAPAPAPGPGPAPAPAPUPAAPAPAPAPUPGPCPAPGPUPUPCPAPAPUPCPUPA)-3')	Escherichia coli	Bacteria	RF00005	The structures of Capreomycin bound to the 70S ribosome.	X-ray diffraction	3.45	2014-07-09
6	4V67\|1\|AY	Transfer RNA	P AND E-SITE TRNA(FMET), MRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of a translation termination complex formed with release factor RF2.	X-ray diffraction	3	2014-07-09
7	4V63\|1\|AY	Transfer RNA	P and E-site tRNA(fMet), mRNA	Escherichia coli	Bacteria	RF00005	Structural basis for translation termination on the 70S ribosome.	X-ray diffraction	3.21	2014-07-09
8	4V87\|1\|BC	Transfer RNA	TRNA-FMET, MRNA	Escherichia coli	Bacteria	RF00005	Crystal structure analysis of ribosomal decoding.	X-ray diffraction	3.1	2014-07-09
9	4V8F\|1\|CC	Transfer RNA	TRNA-FMET, MRNA	Escherichia coli	Bacteria	RF00005	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).	X-ray diffraction	3.3	2014-07-09
10	4V9I\|1\|CV	Transfer RNA	P-SITE tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon	X-ray diffraction	3.3	2014-07-09
11	4V6A\|1\|CW	Transfer RNA	tRNA-Met, RNA (5'-R(PAPAPAPUP*G)-3')	Escherichia coli	Bacteria	RF00005	Structure of EF-P bound to the 70S ribosome.	X-ray diffraction	3.1	2014-07-09
12	4V63\|1\|CY	Transfer RNA	P and E-site tRNA(fMet), mRNA	Escherichia coli	Bacteria	RF00005	Structural basis for translation termination on the 70S ribosome.	X-ray diffraction	3.21	2014-07-09
13	4V67\|1\|CY	Transfer RNA	P AND E-SITE TRNA(FMET), MRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of a translation termination complex formed with release factor RF2.	X-ray diffraction	3	2014-07-09
14	4V8C\|1\|DC	Transfer RNA	TRNA-FMET, MRNA	Escherichia coli	Bacteria	RF00005	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).	X-ray diffraction	3.3	2014-07-09
15	4V8B\|1\|AC	Transfer RNA	TRNA-FMET, MRNA	Escherichia coli	Bacteria	RF00005	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-ray diffraction	3	2014-07-09
16	4V63\|1\|AZ	Transfer RNA	P and E-site tRNA(fMet)	Escherichia coli	Bacteria	RF00005	Structural basis for translation termination on the 70S ribosome.	X-ray diffraction	3.21	2014-07-09
17	4V67\|1\|AZ	Transfer RNA	P AND E-SITE TRNA(FMET)	Escherichia coli	Bacteria	RF00005	Crystal structure of a translation termination complex formed with release factor RF2.	X-ray diffraction	3	2014-07-09
18	4V8E\|1\|BC	Transfer RNA	TRNA-FMET, MRNA	Escherichia coli	Bacteria	RF00005	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).	X-ray diffraction	3.3	2014-07-09
19	4V8Q\|1\|BV	Transfer RNA	E-SITE or P-SITE TRNA FMET, MRNA	Escherichia coli	Bacteria	RF00005	Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome	X-ray diffraction	3.1	2014-07-09
20	4V8B\|1\|CC	Transfer RNA	TRNA-FMET, MRNA	Escherichia coli	Bacteria	RF00005	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-ray diffraction	3	2014-07-09
21	4V6G\|1\|CC	Transfer RNA	TRNA FMET (UNMODIFIED BASES), MRNA	Escherichia coli	Bacteria	RF00005	Initiation complex of 70S ribosome with two tRNAs and mRNA.	X-ray diffraction	3.5	2014-07-09
22	4V8C\|1\|CC	Transfer RNA	TRNA-FMET, MRNA	Escherichia coli	Bacteria	RF00005	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).	X-ray diffraction	3.3	2014-07-09
23	4V63\|1\|CZ	Transfer RNA	P and E-site tRNA(fMet)	Escherichia coli	Bacteria	RF00005	Structural basis for translation termination on the 70S ribosome.	X-ray diffraction	3.21	2014-07-09
24	4V67\|1\|CZ	Transfer RNA	P AND E-SITE TRNA(FMET)	Escherichia coli	Bacteria	RF00005	Crystal structure of a translation termination complex formed with release factor RF2.	X-ray diffraction	3	2014-07-09
25	4V8E\|1\|DC	Transfer RNA	TRNA-FMET, MRNA	Escherichia coli	Bacteria	RF00005	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).	X-ray diffraction	3.3	2014-07-09
26	4LT8\|1\|QV	Transfer RNA	P-site tRNA fMet, messenger RNA, A-site ASL Pro	Escherichia coli	Bacteria	RF00005	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the Ribosome	X-ray diffraction	3.14	2014-08-06
27	4LT8\|1\|XV	Transfer RNA	P-site tRNA fMet, messenger RNA, A-site ASL Pro	Escherichia coli	Bacteria	RF00005	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the Ribosome	X-ray diffraction	3.14	2014-08-06
28	4LNT\|1\|XV	Transfer RNA	P-site tRNA fMet, messenger RNA, A-site ASL SufA6	Escherichia coli	Bacteria	RF00005	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome	X-ray diffraction	2.94	2014-08-06
29	4Y4P\|1\|1x	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-ray diffraction	2.5	2015-03-18
30	4Y4P\|1\|2x	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-ray diffraction	2.5	2015-03-18
31	3CW5\|1\|A	Transfer RNA	Initiator tRNA	Escherichia coli	Bacteria	RF00005	E. coli Initiator tRNA	X-ray diffraction	3.1	2008-09-02
32	4W2G\|1\|AX	Transfer RNA	E-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.55	2014-10-15
33	4W2F\|1\|AX	Transfer RNA	E-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.4	2014-10-15
34	4W2H\|1\|AX	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site	X-ray diffraction	2.7	2014-10-15
35	4W2I\|1\|AX	Transfer RNA	E-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.7	2014-10-15
36	1VY5\|1\|AX	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-ray diffraction	2.55	2014-08-20
37	1VY5\|1\|CX	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-ray diffraction	2.55	2014-08-20
38	4W2F\|1\|CX	Transfer RNA	E-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.4	2014-10-15
39	4W2I\|1\|CX	Transfer RNA	E-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.7	2014-10-15
40	4W2G\|1\|CX	Transfer RNA	E-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.55	2014-10-15
41	4V5C\|1\|AV	Transfer RNA	P-SITE TRNA FMET, MRNA	Escherichia coli	Bacteria	RF00005	Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.	X-ray diffraction	3.3	2014-07-09
42	1VY7\|1\|AX	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-ray diffraction	2.8	2014-08-20
43	1VY6\|1\|AX	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-ray diffraction	2.9	2014-08-20
44	1VY4\|1\|AX	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-ray diffraction	2.6	2014-08-20
45	1VY6\|1\|CX	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-ray diffraction	2.9	2014-08-20
46	4WPO\|1\|DX	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state	X-ray diffraction	2.8	2015-01-28
47	4V8D\|1\|AC	Transfer RNA	TRNA-FMET, MRNA	Escherichia coli	Bacteria	RF00005	Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).	X-ray diffraction	3	2014-07-09
48	4V9I\|1\|AV	Transfer RNA	P-SITE tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon	X-ray diffraction	3.3	2014-07-09
49	4V6A\|1\|AW	Transfer RNA	tRNA-Met, RNA (5'-R(PAPAPAPUP*G)-3')	Escherichia coli	Bacteria	RF00005	Structure of EF-P bound to the 70S ribosome.	X-ray diffraction	3.1	2014-07-09
50	4V87\|1\|CC	Transfer RNA	TRNA-FMET, MRNA	Escherichia coli	Bacteria	RF00005	Crystal structure analysis of ribosomal decoding.	X-ray diffraction	3.1	2014-07-09
51	4V7M\|1\|CX	Transfer RNA	RNA (77-MER), RNA (5'-R(APAPAPAPAPGPGPAPAPAPUPAAPAPAPAPUPGPCPAPGPUPUPCPAPAPUPCPUPA)-3')	Escherichia coli	Bacteria	RF00005	The structures of Capreomycin bound to the 70S ribosome.	X-ray diffraction	3.45	2014-07-09
52	4LNT\|1\|QV	Transfer RNA	P-site tRNA fMet, messenger RNA, A-site ASL SufA6	Escherichia coli	Bacteria	RF00005	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome	X-ray diffraction	2.94	2014-08-06
53	3CW6\|1\|A	Transfer RNA	Initiator tRNA	Escherichia coli	Bacteria	RF00005	E. coli Initiator tRNA	X-ray diffraction	3.3	2008-09-02
54	4WQY\|1\|BX	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)	X-ray diffraction	2.8	2015-01-28
55	4V8D\|1\|CC	Transfer RNA	TRNA-FMET, MRNA	Escherichia coli	Bacteria	RF00005	Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).	X-ray diffraction	3	2014-07-09
56	1VVJ\|1\|QV	Transfer RNA	P-site tRNA fMet, messenger RNA, A-site ASL SufA6	Escherichia coli	Bacteria	RF00005	Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome	X-ray diffraction	3.44	2014-08-06
57	4LSK\|1\|QV	Transfer RNA	P-site tRNA fMet, messenger RNA, A-site ASL SufA6	Escherichia coli	Bacteria	RF00005	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome	X-ray diffraction	3.48	2014-08-06
58	1VVJ\|1\|XV	Transfer RNA	P-site tRNA fMet, messenger RNA, A-site ASL SufA6	Escherichia coli	Bacteria	RF00005	Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome	X-ray diffraction	3.44	2014-08-06
59	4LSK\|1\|XV	Transfer RNA	P-site tRNA fMet, messenger RNA, A-site ASL SufA6	Escherichia coli	Bacteria	RF00005	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome	X-ray diffraction	3.48	2014-08-06
60	4WPO\|1\|BX	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state	X-ray diffraction	2.8	2015-01-28
61	4V6G\|1\|CB	Transfer RNA	TRNA FMET (UNMODIFIED BASES), MRNA	Escherichia coli	Bacteria	RF00005	Initiation complex of 70S ribosome with two tRNAs and mRNA.	X-ray diffraction	3.5	2014-07-09
62	4W2H\|1\|CX	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site	X-ray diffraction	2.7	2014-10-15
63	4WQY\|1\|DX	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)	X-ray diffraction	2.8	2015-01-28
64	4V51\|1\|AV	Transfer RNA	P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54), E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES), MRNA	Escherichia coli	Bacteria	RF00005	Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin	X-ray diffraction	2.8	2014-07-09
65	4V51\|1\|CV	Transfer RNA	P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54), E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES), MRNA	Escherichia coli	Bacteria	RF00005	Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin	X-ray diffraction	2.8	2014-07-09
66	4V6G\|1\|AC	Transfer RNA	TRNA FMET (UNMODIFIED BASES), MRNA	Escherichia coli	Bacteria	RF00005	Initiation complex of 70S ribosome with two tRNAs and mRNA.	X-ray diffraction	3.5	2014-07-09
67	4V5K\|1\|AV	Transfer RNA	E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA	Escherichia coli	Bacteria	RF00005	Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome	X-ray diffraction	3.2	2014-07-09
68	4V7L\|1\|AX	Transfer RNA	tRNA-Met, RNA (5'-R(APAPAPAPAPGPGPAPAPAPUPAAPAPAPAPUPGPCPAPGPUPUPCPAPAPUPCPUPA)-3')	Escherichia coli	Bacteria	RF00005	The structures of viomycin bound to the 70S ribosome.	X-ray diffraction	3	2014-07-09
69	1VY7\|1\|CX	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-ray diffraction	2.8	2014-08-20
70	1VY4\|1\|CX	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-ray diffraction	2.6	2014-08-20
71	2FMT\|1\|C		FORMYL-METHIONYL-TRNAFMET2	synthetic construct			METHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMET	X-ray diffraction	2.8	1999-07-29
72	2FMT\|1\|D		FORMYL-METHIONYL-TRNAFMET2	synthetic construct			METHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMET	X-ray diffraction	2.8	1999-07-29
73	4V5C\|1\|CV	Transfer RNA	P-SITE TRNA FMET, MRNA	Escherichia coli	Bacteria	RF00005	Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.	X-ray diffraction	3.3	2014-07-09
74	5AFI\|1\|v	Transfer RNA	P-site fMet-tRNAfMet, mRNA	Escherichia coli	Bacteria	RF00005	2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM	Electron microscopy	2.9	2015-03-11
75	4V8F\|1\|BC	Transfer RNA	TRNA-FMET, MRNA	Escherichia coli	Bacteria	RF00005	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).	X-ray diffraction	3.3	2014-07-09
76	4V6G\|1\|CD	Transfer RNA	TRNA FMET (UNMODIFIED BASES)	Escherichia coli	Bacteria	RF00005	Initiation complex of 70S ribosome with two tRNAs and mRNA.	X-ray diffraction	3.5	2014-07-09
77	4V5K\|1\|CV	Transfer RNA	E-SITE TRNA PHE OR P-SITE TRNA PHE	Escherichia coli	Bacteria	RF00005	Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome	X-ray diffraction	3.2	2014-07-09
78	4V6G\|1\|AD	Transfer RNA	TRNA FMET (UNMODIFIED BASES)	Escherichia coli	Bacteria	RF00005	Initiation complex of 70S ribosome with two tRNAs and mRNA.	X-ray diffraction	3.5	2014-07-09
79	4V7L\|1\|CX	Transfer RNA	tRNA-Met, RNA (5'-R(APAPAPAPAPGPGPAPAPAPUPAAPAPAPAPUPGPCPAPGPUPUPCPAPAPUPCPUPA)-3')	Escherichia coli	Bacteria	RF00005	The structures of viomycin bound to the 70S ribosome.	X-ray diffraction	3	2014-07-09
80	4V8Q\|1\|BW	Transfer RNA	E-SITE or P-SITE TRNA FMET	Escherichia coli	Bacteria	RF00005	Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome	X-ray diffraction	3.1	2014-07-09
81	4V8C\|1\|CD	Transfer RNA	TRNA-FMET	Escherichia coli	Bacteria	RF00005	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).	X-ray diffraction	3.3	2014-07-09
82	4V8B\|1\|AD	Transfer RNA	TRNA-FMET	Escherichia coli	Bacteria	RF00005	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-ray diffraction	3	2014-07-09
83	4V87\|1\|CD	Transfer RNA	TRNA-FMET	Escherichia coli	Bacteria	RF00005	Crystal structure analysis of ribosomal decoding.	X-ray diffraction	3.1	2014-07-09
84	4V8C\|1\|DD	Transfer RNA	TRNA-FMET	Escherichia coli	Bacteria	RF00005	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).	X-ray diffraction	3.3	2014-07-09
85	4V87\|1\|BD	Transfer RNA	TRNA-FMET	Escherichia coli	Bacteria	RF00005	Crystal structure analysis of ribosomal decoding.	X-ray diffraction	3.1	2014-07-09
86	4V8B\|1\|CD	Transfer RNA	TRNA-FMET	Escherichia coli	Bacteria	RF00005	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-ray diffraction	3	2014-07-09
87	5AFI\|1\|w	Transfer RNA	P-site fMet-tRNAfMet	Escherichia coli	Bacteria	RF00005	2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM	Electron microscopy	2.9	2015-03-11
88	3QSY\|1\|D	Transfer RNA	tRNA	Escherichia coli	Bacteria	RF00005	Recognition of the methionylated initiator tRNA by the translation initiation factor 2 in Archaea	X-ray diffraction	3.2	2012-03-21
89	4V5K\|1\|AW	Transfer RNA	E-SITE TRNA PHE OR P-SITE TRNA PHE	Escherichia coli	Bacteria	RF00005	Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome	X-ray diffraction	3.2	2014-07-09
90	4V5K\|1\|CW	Transfer RNA	E-SITE TRNA PHE OR P-SITE TRNA PHE	Escherichia coli	Bacteria	RF00005	Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome	X-ray diffraction	3.2	2014-07-09

Release history

Release	2.23
Date	2015-05-15

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_3.5_35542.6	NR_all_35542.5	2.23	(90) 4LT8\|1\|XV, 4W2H\|1\|AX, 4V8C\|1\|DD, 4V6A\|1\|AW, 4LSK\|1\|XV, 4W2G\|1\|AX, 4V6G\|1\|CC, 4V5C\|1\|CV, 4W2I\|1\|CX, 4V8E\|1\|DC, 4V6G\|1\|CB, 4V51\|1\|CV, 4W2I\|1\|AX, 4V8D\|1\|CC, 4V7M\|1\|AX, 4V5K\|1\|CW, 4WQY\|1\|DX, 4V8Q\|1\|BW, 4V7L\|1\|AX, 4V5K\|1\|AW, 4WPO\|1\|DX, 4V8F\|1\|CC, 1VY4\|1\|CX, 4V87\|1\|CC, 4V63\|1\|CZ, 5AFI\|1\|w, 1VVJ\|1\|XV, 3CW6\|1\|A, 4V9R\|1\|CX, 4V87\|1\|BC, 4V8B\|1\|AC, 4V63\|1\|AZ, 4Y4P\|1\|2x, 2FMT\|1\|D, 4V9I\|1\|CV, 4V67\|1\|CY, 1VY5\|1\|CX, 4LSK\|1\|QV, 4W2F\|1\|AX, 4V8C\|1\|CC, 4V67\|1\|AZ, 4LNT\|1\|QV, 4V9S\|1\|CX, 4V8B\|1\|CC, 1VY7\|1\|CX, 4V6G\|1\|AC, 4V51\|1\|AV, 1VY6\|1\|CX, 4V8D\|1\|AC, 4LT8\|1\|QV, 4V8C\|1\|DC, 4V5K\|1\|AV, 4WPO\|1\|BX, 4V8F\|1\|BC, 4V5C\|1\|AV, 4V8E\|1\|BC, 4Y4P\|1\|1x, 4V7L\|1\|CX, 4V5K\|1\|CV, 4WQY\|1\|BX, 4V8Q\|1\|BV, 4V6G\|1\|CD, 1VY4\|1\|AX, 3QSY\|1\|D, 4V87\|1\|BD, 4V8B\|1\|AD, 5AFI\|1\|v, 1VVJ\|1\|QV, 3CW5\|1\|A, 4V7M\|1\|CX, 4V87\|1\|CD, 4V63\|1\|AY, 1VY6\|1\|AX, 4W2F\|1\|CX, 1VY5\|1\|AX, 4LNT\|1\|XV, 4V8B\|1\|CD, 2FMT\|1\|C, 4W2H\|1\|CX, 1VY7\|1\|AX, 4V6A\|1\|CW, 4W2G\|1\|CX, 4V67\|1\|CZ, 4V6G\|1\|AD, 4V9I\|1\|AV, 4V9S\|1\|AX, 4V63\|1\|CY, 4V9R\|1\|AX, 4V8C\|1\|CD, 4V67\|1\|AY	(0)	(53) 4V6V\|1\|A3, 3J5S\|1\|E, 4V6T\|1\|AX, 4LFZ\|1\|XV, 4V77\|1\|A3, 4LFZ\|1\|QV, 4V7P\|1\|AW, 4V5F\|1\|CV, 4V7B\|1\|AV, 4V5F\|1\|AW, 3J77\|1\|PT, 4V71\|1\|A3, 4V70\|1\|A3, 4LEL\|1\|XV, 4V6O\|1\|AD, 4V6N\|1\|BD, 4V76\|1\|A3, 3DEG\|1\|B, 4V6S\|1\|BC, 4V75\|1\|A3, 4V79\|1\|A3, 4V5F\|1\|AV, 4V6Z\|1\|A3, 4LEL\|1\|QV, 4V69\|1\|AV, 1EG0\|1\|O, 4P6F\|1\|QV, 4V78\|1\|A3, 4V6Y\|1\|A3, 4P6F\|1\|XV, 4L71\|1\|XV, 4V4Z\|1\|AC, 4V5F\|1\|CW, 4V97\|1\|CV, 3J78\|1\|ET, 4V7P\|1\|DW, 4V97\|1\|AV, 4P70\|1\|XV, 4P70\|1\|QV, 4V6P\|1\|AD, 4V8O\|1\|AV, 3V11\|1\|D, 3J9Y\|1\|v, 4V8J\|1\|CV, 4V74\|1\|A3, 4V6R\|1\|AD, 3J78\|1\|PT, 4V8J\|1\|AV, 4V73\|1\|A3, 4V6Q\|1\|AD, 4V4X\|1\|AC, 4L71\|1\|QV, 4V72\|1\|A3

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	4V8F\|1\|CC	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).	X-RAY DIFFRACTION	3.3	77
2	4V8D\|1\|CC	Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).	X-RAY DIFFRACTION	3	77
3	4V8E\|1\|BC	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).	X-RAY DIFFRACTION	3.3	77
4	4V8E\|1\|DC	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).	X-RAY DIFFRACTION	3.3	77
5	4V8D\|1\|AC	Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).	X-RAY DIFFRACTION	3	77
6	4V8F\|1\|BC	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).	X-RAY DIFFRACTION	3.3	77
7	4V8B\|1\|CC	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-RAY DIFFRACTION	3	77
8	4V87\|1\|CC	Crystal structure analysis of ribosomal decoding.	X-RAY DIFFRACTION	3.1	77
9	4V8C\|1\|DC	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).	X-RAY DIFFRACTION	3.3	77
10	4V8C\|1\|CC	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).	X-RAY DIFFRACTION	3.3	77
11	4V87\|1\|BC	Crystal structure analysis of ribosomal decoding.	X-RAY DIFFRACTION	3.1	77
12	4V8B\|1\|AC	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-RAY DIFFRACTION	3	77
13	4V6G\|1\|CC	Initiation complex of 70S ribosome with two tRNAs and mRNA.	X-RAY DIFFRACTION	3.5	77
14	4W2I\|1\|AX	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.7	72
15	4W2G\|1\|AX	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.55	72
16	1VY5\|1\|AX	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-RAY DIFFRACTION	2.55	72
17	1VY4\|1\|AX	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-RAY DIFFRACTION	2.6	71
18	4V9R\|1\|AX	Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome	X-RAY DIFFRACTION	3	76
19	4V9S\|1\|AX	Crystal structure of antibiotic GE82832 bound to 70S ribosome	X-RAY DIFFRACTION	3.1	76
20	4WPO\|1\|BX	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state	X-RAY DIFFRACTION	2.8	71
21	4WQY\|1\|BX	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)	X-RAY DIFFRACTION	2.8	72
22	1VY7\|1\|AX	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-RAY DIFFRACTION	2.8	71
23	1VY6\|1\|AX	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-RAY DIFFRACTION	2.9	71
24	4W2F\|1\|AX	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.4	72
25	4Y4P\|1\|1x	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-RAY DIFFRACTION	2.5	72
26	4W2H\|1\|AX	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site	X-RAY DIFFRACTION	2.7	72
27	5AFI\|1\|v	2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM	ELECTRON MICROSCOPY	2.9	73
28	4V5K\|1\|AV	Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome	X-RAY DIFFRACTION	3.2	77
29	4V5C\|1\|CV	Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.	X-RAY DIFFRACTION	3.3	76
30	4V5K\|1\|CV	Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome	X-RAY DIFFRACTION	3.2	77
31	4V6G\|1\|AC	Initiation complex of 70S ribosome with two tRNAs and mRNA.	X-RAY DIFFRACTION	3.5	77
32	4LNT\|1\|QV	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome	X-RAY DIFFRACTION	2.94	77
33	4LT8\|1\|QV	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the Ribosome	X-RAY DIFFRACTION	3.14	77
34	1VVJ\|1\|XV	Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome	X-RAY DIFFRACTION	3.44	77
35	4LSK\|1\|QV	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome	X-RAY DIFFRACTION	3.48	77
36	4LSK\|1\|XV	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome	X-RAY DIFFRACTION	3.48	77
37	1VVJ\|1\|QV	Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome	X-RAY DIFFRACTION	3.44	77
38	4LT8\|1\|XV	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the Ribosome	X-RAY DIFFRACTION	3.14	77
39	4V7M\|1\|AX	The structures of Capreomycin bound to the 70S ribosome.	X-RAY DIFFRACTION	3.45	77
40	4LNT\|1\|XV	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome	X-RAY DIFFRACTION	2.94	77
41	4V5C\|1\|AV	Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.	X-RAY DIFFRACTION	3.3	76
42	4V9I\|1\|CV	Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon	X-RAY DIFFRACTION	3.3	77
43	4V7L\|1\|CX	The structures of viomycin bound to the 70S ribosome.	X-RAY DIFFRACTION	3	77
44	4V7M\|1\|CX	The structures of Capreomycin bound to the 70S ribosome.	X-RAY DIFFRACTION	3.45	77
45	4V7L\|1\|AX	The structures of viomycin bound to the 70S ribosome.	X-RAY DIFFRACTION	3	77
46	4V9I\|1\|AV	Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon	X-RAY DIFFRACTION	3.3	77
47	4V51\|1\|CV	Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin	X-RAY DIFFRACTION	2.8	76
48	4V51\|1\|AV	Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin	X-RAY DIFFRACTION	2.8	76
49	4V6A\|1\|CW	Structure of EF-P bound to the 70S ribosome.	X-RAY DIFFRACTION	3.1	77
50	4V67\|1\|CY	Crystal structure of a translation termination complex formed with release factor RF2.	X-RAY DIFFRACTION	3	77
51	4V67\|1\|AY	Crystal structure of a translation termination complex formed with release factor RF2.	X-RAY DIFFRACTION	3	77
52	4V63\|1\|AY	Structural basis for translation termination on the 70S ribosome.	X-RAY DIFFRACTION	3.21	77
53	4V63\|1\|CY	Structural basis for translation termination on the 70S ribosome.	X-RAY DIFFRACTION	3.21	77
54	4V8Q\|1\|BV	Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome	X-RAY DIFFRACTION	3.1	77
55	4V6A\|1\|AW	Structure of EF-P bound to the 70S ribosome.	X-RAY DIFFRACTION	3.1	77
56	4W2I\|1\|CX	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.7	72
57	4V9S\|1\|CX	Crystal structure of antibiotic GE82832 bound to 70S ribosome	X-RAY DIFFRACTION	3.1	76
58	4V9R\|1\|CX	Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome	X-RAY DIFFRACTION	3	76
59	4W2H\|1\|CX	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site	X-RAY DIFFRACTION	2.7	72
60	4WQY\|1\|DX	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)	X-RAY DIFFRACTION	2.8	72
61	4WPO\|1\|DX	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state	X-RAY DIFFRACTION	2.8	71
62	1VY4\|1\|CX	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-RAY DIFFRACTION	2.6	71
63	1VY5\|1\|CX	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-RAY DIFFRACTION	2.55	72
64	4W2G\|1\|CX	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.55	72
65	4W2F\|1\|CX	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.4	72
66	4Y4P\|1\|2x	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-RAY DIFFRACTION	2.5	72
67	1VY6\|1\|CX	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-RAY DIFFRACTION	2.9	71
68	1VY7\|1\|CX	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-RAY DIFFRACTION	2.8	71
69	5AFI\|1\|w	2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM	ELECTRON MICROSCOPY	2.9	73
70	4V6G\|1\|CB	Initiation complex of 70S ribosome with two tRNAs and mRNA.	X-RAY DIFFRACTION	3.5	65
71	4V5K\|1\|AW	Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome	X-RAY DIFFRACTION	3.2	77
72	4V5K\|1\|CW	Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome	X-RAY DIFFRACTION	3.2	77
73	4V8Q\|1\|BW	Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome	X-RAY DIFFRACTION	3.1	77
74	4V63\|1\|CZ	Structural basis for translation termination on the 70S ribosome.	X-RAY DIFFRACTION	3.21	77
75	4V63\|1\|AZ	Structural basis for translation termination on the 70S ribosome.	X-RAY DIFFRACTION	3.21	77
76	4V67\|1\|AZ	Crystal structure of a translation termination complex formed with release factor RF2.	X-RAY DIFFRACTION	3	77
77	4V67\|1\|CZ	Crystal structure of a translation termination complex formed with release factor RF2.	X-RAY DIFFRACTION	3	77
78	4V6G\|1\|CD	Initiation complex of 70S ribosome with two tRNAs and mRNA.	X-RAY DIFFRACTION	3.5	77
79	4V87\|1\|BD	Crystal structure analysis of ribosomal decoding.	X-RAY DIFFRACTION	3.1	77
80	4V8B\|1\|AD	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-RAY DIFFRACTION	3	77
81	4V8C\|1\|CD	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).	X-RAY DIFFRACTION	3.3	77
82	4V8C\|1\|DD	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).	X-RAY DIFFRACTION	3.3	77
83	4V8B\|1\|CD	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-RAY DIFFRACTION	3	77
84	4V87\|1\|CD	Crystal structure analysis of ribosomal decoding.	X-RAY DIFFRACTION	3.1	77
85	4V6G\|1\|AD	Initiation complex of 70S ribosome with two tRNAs and mRNA.	X-RAY DIFFRACTION	3.5	77
86	3CW6\|1\|A	E. coli Initiator tRNA	X-RAY DIFFRACTION	3.3	72
87	3CW5\|1\|A	E. coli Initiator tRNA	X-RAY DIFFRACTION	3.1	72
88	2FMT\|1\|D	METHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMET	X-RAY DIFFRACTION	2.8	72
89	2FMT\|1\|C	METHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMET	X-RAY DIFFRACTION	2.8	72
90	3QSY\|1\|D	Recognition of the methionylated initiator tRNA by the translation initiation factor 2 in Archaea	X-RAY DIFFRACTION	3.2	77

Equivalence class NR_3.5_35542.6 Obsolete

Release history

Parents

Children